Gene annotation
Transcriptome id Sobic.001G074300.1
Synonym Sb01g006720
Functional annotation 40S ribosomal protein S29, putative, expressed
UniProt A0A1B6QHR4
Pfam PF00253
Panther DB PTHR12010 PTHR12010:SF6
NCBI CDD KOG3506; 40S ribosomal protein S29
KEGG Orthology K02980; RP-S29e, small subunit ribosomal protein S29e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G43980 : Ribosomal protein S14p/S29e family protein
RAP-DB (Rice) LOC_Os12g32380.1 : 40S ribosomal protein S29, putative, expressed
MaizeGDB (Corn) Zm00025a008363
Brachypodium KQJ87626 , KQK12981
Barley -
Wheat TraesCS5D02G417000 , TraesCS5A02G407100 , TraesCS5B02G412000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G074300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G047400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
2 Sobic.001G374700 40S ribosomal protein S21, putative, expressed K02971: RP-S21e, small subunit ribosomal protein S21e
3 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
4 Sobic.006G106100 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
5 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e
6 Sobic.002G175100 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
7 Sobic.007G212600 40S ribosomal protein S15a, putative, expressed K02957: RP-S15Ae, small subunit ribosomal protein S15Ae
8 Sobic.009G166500 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
9 Sobic.001G340500 LSM domain containing protein, expressed K11099: SNRPG, small nuclear ribonucleoprotein G
10 Sobic.002G364100 40S ribosomal protein S3a, putative, expressed K02984: RP-S3Ae, small subunit ribosomal protein S3Ae
11 Sobic.003G254300 peroxiredoxin, putative, expressed -
12 Sobic.001G086300 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
13 Sobic.003G346600 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
14 Sobic.009G242400 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
15 Sobic.004G331400 60S ribosomal protein L39, putative, expressed K02924: RP-L39e, large subunit ribosomal protein L39e
16 Sobic.004G280700 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17781: mitochondrial import inner membrane translocase subunit TIM13
17 Sobic.005G195301 - K02980: RP-S29e, small subunit ribosomal protein S29e
18 Sobic.001G018800 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
19 Sobic.001G048832 - -
20 Sobic.002G364500 40S ribosomal protein S3a, putative, expressed K02984: RP-S3Ae, small subunit ribosomal protein S3Ae


Gene co-expression network
sample Sobic001G074300 Sobic001G074300 Sobic006G047400 Sobic006G047400 Sobic001G074300--Sobic006G047400 Sobic001G374700 Sobic001G374700 Sobic001G074300--Sobic001G374700 Sobic009G163800 Sobic009G163800 Sobic001G074300--Sobic009G163800 Sobic006G106100 Sobic006G106100 Sobic001G074300--Sobic006G106100 Sobic001G091801 Sobic001G091801 Sobic001G074300--Sobic001G091801 Sobic002G175100 Sobic002G175100 Sobic001G074300--Sobic002G175100 Sobic007G212600 Sobic007G212600 Sobic001G074300--Sobic007G212600 Sobic009G166500 Sobic009G166500 Sobic001G074300--Sobic009G166500 Sobic001G340500 Sobic001G340500 Sobic001G074300--Sobic001G340500 Sobic006G047400--Sobic009G166500 Sobic006G047400--Sobic001G374700 Sobic006G047400--Sobic009G163800 Sobic001G493001 Sobic001G493001 Sobic006G047400--Sobic001G493001 Sobic006G047400--Sobic002G175100 Sobic003G408100 Sobic003G408100 Sobic006G047400--Sobic003G408100 Sobic006G047400--Sobic001G091801 Sobic001G130301 Sobic001G130301 Sobic006G047400--Sobic001G130301 Sobic009G215200 Sobic009G215200 Sobic006G047400--Sobic009G215200 Sobic001G374700--Sobic002G175100 Sobic007G184600 Sobic007G184600 Sobic001G374700--Sobic007G184600 Sobic001G402050 Sobic001G402050 Sobic001G374700--Sobic001G402050 Sobic002G081600 Sobic002G081600 Sobic001G374700--Sobic002G081600 Sobic001G374700--Sobic006G047400 Sobic001G374700--Sobic009G215200 Sobic002G200600 Sobic002G200600 Sobic001G374700--Sobic002G200600 Sobic006G116700 Sobic006G116700 Sobic001G374700--Sobic006G116700 Sobic001G374700--Sobic001G493001 Sobic009G163800--Sobic009G166500 Sobic009G050300 Sobic009G050300 Sobic009G163800--Sobic009G050300 Sobic003G346600 Sobic003G346600 Sobic009G163800--Sobic003G346600 Sobic007G138700 Sobic007G138700 Sobic009G163800--Sobic007G138700 Sobic009G163800--Sobic006G047400 Sobic009G163800--Sobic003G408100 Sobic004G331400 Sobic004G331400 Sobic009G163800--Sobic004G331400 Sobic009G163800--Sobic002G081600 Sobic009G163800--Sobic001G091801 Sobic006G106100--Sobic001G091801 Sobic007G019400 Sobic007G019400 Sobic006G106100--Sobic007G019400 Sobic001G376600 Sobic001G376600 Sobic006G106100--Sobic001G376600 Sobic010G206200 Sobic010G206200 Sobic006G106100--Sobic010G206200 Sobic010G251600 Sobic010G251600 Sobic006G106100--Sobic010G251600 Sobic004G280700 Sobic004G280700 Sobic006G106100--Sobic004G280700 Sobic006G106100--Sobic002G175100 Sobic006G106100--Sobic004G331400 Sobic001G054900 Sobic001G054900 Sobic006G106100--Sobic001G054900 Sobic004G145801 Sobic004G145801 Sobic001G091801--Sobic004G145801 Sobic004G104100 Sobic004G104100 Sobic001G091801--Sobic004G104100 Sobic001G091801--Sobic007G212600 Sobic001G091801--Sobic009G050300 Sobic001G091801--Sobic009G166500 Sobic001G091801--Sobic009G163800 Sobic005G019700 Sobic005G019700 Sobic001G091801--Sobic005G019700 Sobic003G322400 Sobic003G322400 Sobic001G091801--Sobic003G322400 Sobic001G091801--Sobic002G175100 Sobic002G175100--Sobic004G331400 Sobic002G175100--Sobic001G374700 Sobic002G175100--Sobic009G215200 Sobic002G175100--Sobic006G116700 Sobic002G175100--Sobic001G091801 Sobic002G175100--Sobic006G047400 Sobic002G175100--Sobic009G050300 Sobic002G175100--Sobic002G081600 Sobic002G175100--Sobic003G346600 Sobic007G212600--Sobic001G091801 Sobic007G212600--Sobic003G322400 Sobic007G212600--Sobic001G374700 Sobic007G212600--Sobic009G166500 Sobic001G016400 Sobic001G016400 Sobic007G212600--Sobic001G016400 Sobic003G321700 Sobic003G321700 Sobic007G212600--Sobic003G321700 Sobic007G212600--Sobic004G104100 Sobic010G260100 Sobic010G260100 Sobic007G212600--Sobic010G260100 Sobic007G212600--Sobic009G050300 Sobic009G166500--Sobic006G047400 Sobic009G166500--Sobic009G163800 Sobic009G166500--Sobic003G346600 Sobic009G166500--Sobic009G050300 Sobic009G166500--Sobic001G091801 Sobic009G166500--Sobic002G081600 Sobic009G166500--Sobic001G374700 Sobic001G403500 Sobic001G403500 Sobic009G166500--Sobic001G403500 Sobic010G060500 Sobic010G060500 Sobic009G166500--Sobic010G060500 Sobic001G340500--Sobic009G166500 Sobic001G018800 Sobic001G018800 Sobic001G340500--Sobic001G018800 Sobic001G340500--Sobic002G081600 Sobic005G110800 Sobic005G110800 Sobic001G340500--Sobic005G110800 Sobic006G137100 Sobic006G137100 Sobic001G340500--Sobic006G137100 Sobic001G340500--Sobic009G163800 Sobic001G340500--Sobic003G346600 Sobic006G147000 Sobic006G147000 Sobic001G340500--Sobic006G147000 Sobic003G018600 Sobic003G018600 Sobic001G340500--Sobic003G018600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.