Gene annotation
Transcriptome id Sobic.003G254300.1
Synonym TPX1, Sb03g030950
Functional annotation peroxiredoxin, putative, expressed
UniProt C5XG44
Pfam PF00578
Panther DB PTHR10430
NCBI CDD KOG0541; Alkyl hydroperoxide reductase/peroxiredoxin
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity GO:0016209antioxidant activity


Orthologs (automatic annotation)
TAIR AT1G65980 : thioredoxin-dependent peroxidase 1
RAP-DB (Rice) LOC_Os01g48420.1 : peroxiredoxin, putative, expressed
MaizeGDB (Corn) Zm00025a038816
Brachypodium KQK09163
Barley HORVU3Hr1G062040.1 , HORVU3Hr1G062040.2
Wheat TraesCS3D02G270100 , TraesCS3B02G304100 , TraesCS3A02G270300
Populus -


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cDNA sequences
Sobic.003G254300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G215200 60S ribosomal protein L28-1, putative, expressed K02903: RP-L28e, large subunit ribosomal protein L28e
2 Sobic.001G130301 - K02971: RP-S21e, small subunit ribosomal protein S21e
3 Sobic.004G211833 - K02267: cytochrome c oxidase subunit 6b
4 Sobic.001G018900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
5 Sobic.001G374700 40S ribosomal protein S21, putative, expressed K02971: RP-S21e, small subunit ribosomal protein S21e
6 Sobic.010G012500 ATOZI1, putative, expressed -
7 Sobic.006G047400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
8 Sobic.007G051000 mitochondrial NADH-ubiquinone oxidoreductase, putative, expressed K03939: NADH dehydrogenase (ubiquinone) Fe-S protein 6
9 Sobic.007G197800 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
10 Sobic.001G295200 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
11 Sobic.001G493001 - K02979: RP-S28e, small subunit ribosomal protein S28e
12 Sobic.001G036900 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
13 Sobic.006G141700 OsGrx_C2.2 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
14 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
15 Sobic.001G016400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
16 Sobic.001G134400 CHCH domain containing protein, expressed -
17 Sobic.001G034700 actin-depolymerizing factor, putative, expressed K05765: cofilin
18 Sobic.004G280700 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17781: mitochondrial import inner membrane translocase subunit TIM13
19 Sobic.001G402050 - K02979: RP-S28e, small subunit ribosomal protein S28e
20 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e


Gene co-expression network
sample Sobic003G254300 Sobic003G254300 Sobic009G215200 Sobic009G215200 Sobic003G254300--Sobic009G215200 Sobic001G130301 Sobic001G130301 Sobic003G254300--Sobic001G130301 Sobic004G211833 Sobic004G211833 Sobic003G254300--Sobic004G211833 Sobic001G018900 Sobic001G018900 Sobic003G254300--Sobic001G018900 Sobic001G374700 Sobic001G374700 Sobic003G254300--Sobic001G374700 Sobic010G012500 Sobic010G012500 Sobic003G254300--Sobic010G012500 Sobic006G047400 Sobic006G047400 Sobic003G254300--Sobic006G047400 Sobic007G051000 Sobic007G051000 Sobic003G254300--Sobic007G051000 Sobic007G197800 Sobic007G197800 Sobic003G254300--Sobic007G197800 Sobic006G116700 Sobic006G116700 Sobic009G215200--Sobic006G116700 Sobic009G050300 Sobic009G050300 Sobic009G215200--Sobic009G050300 Sobic009G215200--Sobic001G130301 Sobic002G081600 Sobic002G081600 Sobic009G215200--Sobic002G081600 Sobic009G215200--Sobic001G018900 Sobic009G215200--Sobic007G197800 Sobic001G403500 Sobic001G403500 Sobic009G215200--Sobic001G403500 Sobic001G016400 Sobic001G016400 Sobic009G215200--Sobic001G016400 Sobic009G215200--Sobic001G374700 Sobic001G130301--Sobic009G215200 Sobic001G130301--Sobic007G197800 Sobic001G130301--Sobic006G116700 Sobic001G130301--Sobic001G018900 Sobic001G493001 Sobic001G493001 Sobic001G130301--Sobic001G493001 Sobic001G402050 Sobic001G402050 Sobic001G130301--Sobic001G402050 Sobic001G130301--Sobic009G050300 Sobic002G200600 Sobic002G200600 Sobic001G130301--Sobic002G200600 Sobic001G130301--Sobic001G374700 Sobic004G211833--Sobic010G012500 Sobic006G083500 Sobic006G083500 Sobic004G211833--Sobic006G083500 Sobic002G398901 Sobic002G398901 Sobic004G211833--Sobic002G398901 Sobic004G220000 Sobic004G220000 Sobic004G211833--Sobic004G220000 Sobic004G211833--Sobic007G051000 Sobic009G176000 Sobic009G176000 Sobic004G211833--Sobic009G176000 Sobic002G418400 Sobic002G418400 Sobic004G211833--Sobic002G418400 Sobic002G190900 Sobic002G190900 Sobic004G211833--Sobic002G190900 Sobic003G215700 Sobic003G215700 Sobic004G211833--Sobic003G215700 Sobic001G018900--Sobic006G116700 Sobic001G018900--Sobic009G215200 Sobic001G018900--Sobic009G050300 Sobic001G036900 Sobic001G036900 Sobic001G018900--Sobic001G036900 Sobic001G018900--Sobic007G197800 Sobic002G375100 Sobic002G375100 Sobic001G018900--Sobic002G375100 Sobic001G018900--Sobic001G130301 Sobic001G018900--Sobic001G016400 Sobic003G408100 Sobic003G408100 Sobic001G018900--Sobic003G408100 Sobic002G175100 Sobic002G175100 Sobic001G374700--Sobic002G175100 Sobic007G184600 Sobic007G184600 Sobic001G374700--Sobic007G184600 Sobic001G374700--Sobic001G402050 Sobic001G374700--Sobic002G081600 Sobic001G374700--Sobic006G047400 Sobic001G374700--Sobic009G215200 Sobic001G374700--Sobic002G200600 Sobic001G374700--Sobic006G116700 Sobic001G374700--Sobic001G493001 Sobic010G012500--Sobic004G211833 Sobic010G012500--Sobic002G398901 Sobic010G012500--Sobic006G083500 Sobic010G012500--Sobic007G051000 Sobic010G012500--Sobic002G190900 Sobic010G012500--Sobic004G220000 Sobic010G012500--Sobic009G176000 Sobic010G012500--Sobic002G375100 Sobic010G012500--Sobic002G418400 Sobic009G166500 Sobic009G166500 Sobic006G047400--Sobic009G166500 Sobic006G047400--Sobic001G374700 Sobic009G163800 Sobic009G163800 Sobic006G047400--Sobic009G163800 Sobic006G047400--Sobic001G493001 Sobic006G047400--Sobic002G175100 Sobic006G047400--Sobic003G408100 Sobic001G091801 Sobic001G091801 Sobic006G047400--Sobic001G091801 Sobic006G047400--Sobic001G130301 Sobic006G047400--Sobic009G215200 Sobic007G051000--Sobic010G012500 Sobic007G051000--Sobic009G176000 Sobic007G051000--Sobic002G398901 Sobic007G051000--Sobic004G211833 Sobic007G051000--Sobic002G190900 Sobic007G051000--Sobic006G083500 Sobic001G018500 Sobic001G018500 Sobic007G051000--Sobic001G018500 Sobic003G209000 Sobic003G209000 Sobic007G051000--Sobic003G209000 Sobic010G204500 Sobic010G204500 Sobic007G051000--Sobic010G204500 Sobic007G197800--Sobic006G116700 Sobic007G197800--Sobic009G050300 Sobic007G197800--Sobic001G130301 Sobic007G197800--Sobic001G018900 Sobic007G197800--Sobic009G215200 Sobic007G197800--Sobic001G402050 Sobic007G197800--Sobic001G016400 Sobic007G197800--Sobic001G403500 Sobic004G008400 Sobic004G008400 Sobic007G197800--Sobic004G008400
Octagon: transcription factors


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