Gene annotation
Transcriptome id Sobic.005G195301.1
Synonym -
Functional annotation -
UniProt -
Pfam PF00253
Panther DB PTHR12010 PTHR12010:SF6
NCBI CDD KOG3506; 40S ribosomal protein S29
KEGG Orthology K02980; RP-S29e, small subunit ribosomal protein S29e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G43980 : Ribosomal protein S14p/S29e family protein
RAP-DB (Rice) LOC_Os12g32380.1 : 40S ribosomal protein S29, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQJ86604 , KQK12981 , KQJ87626
Barley HORVU0Hr1G011940.1 , HORVU2Hr1G012080.1 , HORVU0Hr1G011940.3 , HORVU6Hr1G070770.1 , HORVU6Hr1G070770.2 , HORVU2Hr1G012080.2
Wheat TraesCS5D02G115300 , TraesCS5D02G417000 , TraesCS5A02G105800 , TraesCS5A02G407100 , TraesCS5B02G412000 , TraesCS5B02G107700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G212600 40S ribosomal protein S15a, putative, expressed K02957: RP-S15Ae, small subunit ribosomal protein S15Ae
2 Sobic.009G166500 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
3 Sobic.006G047400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
4 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e
5 Sobic.003G321700 KH domain containing protein, putative, expressed K11884: PNO1, RNA-binding protein PNO1
6 Sobic.003G322400 40S ribosomal protein S25, putative, expressed K02975: RP-S25e, small subunit ribosomal protein S25e
7 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
8 Sobic.004G145801 - K02978: RP-S27e, small subunit ribosomal protein S27e
9 Sobic.001G374700 40S ribosomal protein S21, putative, expressed K02971: RP-S21e, small subunit ribosomal protein S21e
10 Sobic.010G260100 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
11 Sobic.003G113700 expressed protein -
12 Sobic.001G281400 expressed protein -
13 Sobic.009G105600 60S ribosomal protein L29-2, putative, expressed K02905: RP-L29e, large subunit ribosomal protein L29e
14 Sobic.001G177800 ribosomal protein, putative, expressed K02866: RP-L10e, large subunit ribosomal protein L10e
15 Sobic.002G190900 expressed protein -
16 Sobic.007G045700 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
17 Sobic.006G147000 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
18 Sobic.008G032100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.001G046300 ribosomal protein, putative, expressed K02981: RP-S2e, small subunit ribosomal protein S2e
20 Sobic.001G046100 ribosomal protein, putative, expressed K02981: RP-S2e, small subunit ribosomal protein S2e


Gene co-expression network
sample Sobic005G195301 Sobic005G195301 Sobic007G212600 Sobic007G212600 Sobic005G195301--Sobic007G212600 Sobic009G166500 Sobic009G166500 Sobic005G195301--Sobic009G166500 Sobic006G047400 Sobic006G047400 Sobic005G195301--Sobic006G047400 Sobic001G091801 Sobic001G091801 Sobic005G195301--Sobic001G091801 Sobic003G321700 Sobic003G321700 Sobic005G195301--Sobic003G321700 Sobic003G322400 Sobic003G322400 Sobic005G195301--Sobic003G322400 Sobic009G163800 Sobic009G163800 Sobic005G195301--Sobic009G163800 Sobic004G145801 Sobic004G145801 Sobic005G195301--Sobic004G145801 Sobic001G374700 Sobic001G374700 Sobic005G195301--Sobic001G374700 Sobic007G212600--Sobic001G091801 Sobic007G212600--Sobic003G322400 Sobic007G212600--Sobic001G374700 Sobic007G212600--Sobic009G166500 Sobic001G016400 Sobic001G016400 Sobic007G212600--Sobic001G016400 Sobic007G212600--Sobic003G321700 Sobic004G104100 Sobic004G104100 Sobic007G212600--Sobic004G104100 Sobic010G260100 Sobic010G260100 Sobic007G212600--Sobic010G260100 Sobic009G050300 Sobic009G050300 Sobic007G212600--Sobic009G050300 Sobic009G166500--Sobic006G047400 Sobic009G166500--Sobic009G163800 Sobic003G346600 Sobic003G346600 Sobic009G166500--Sobic003G346600 Sobic009G166500--Sobic009G050300 Sobic009G166500--Sobic001G091801 Sobic002G081600 Sobic002G081600 Sobic009G166500--Sobic002G081600 Sobic009G166500--Sobic001G374700 Sobic001G403500 Sobic001G403500 Sobic009G166500--Sobic001G403500 Sobic010G060500 Sobic010G060500 Sobic009G166500--Sobic010G060500 Sobic006G047400--Sobic009G166500 Sobic006G047400--Sobic001G374700 Sobic006G047400--Sobic009G163800 Sobic001G493001 Sobic001G493001 Sobic006G047400--Sobic001G493001 Sobic002G175100 Sobic002G175100 Sobic006G047400--Sobic002G175100 Sobic003G408100 Sobic003G408100 Sobic006G047400--Sobic003G408100 Sobic006G047400--Sobic001G091801 Sobic001G130301 Sobic001G130301 Sobic006G047400--Sobic001G130301 Sobic009G215200 Sobic009G215200 Sobic006G047400--Sobic009G215200 Sobic001G091801--Sobic004G145801 Sobic001G091801--Sobic004G104100 Sobic001G091801--Sobic007G212600 Sobic001G091801--Sobic009G050300 Sobic001G091801--Sobic009G166500 Sobic001G091801--Sobic009G163800 Sobic005G019700 Sobic005G019700 Sobic001G091801--Sobic005G019700 Sobic001G091801--Sobic003G322400 Sobic001G091801--Sobic002G175100 Sobic003G321700--Sobic007G212600 Sobic003G321700--Sobic010G260100 Sobic003G321700--Sobic001G091801 Sobic007G190800 Sobic007G190800 Sobic003G321700--Sobic007G190800 Sobic003G321700--Sobic003G322400 Sobic010G259900 Sobic010G259900 Sobic003G321700--Sobic010G259900 Sobic003G321700--Sobic004G145801 Sobic006G147000 Sobic006G147000 Sobic003G321700--Sobic006G147000 Sobic003G321700--Sobic004G104100 Sobic003G322400--Sobic009G050300 Sobic003G322400--Sobic001G091801 Sobic003G322400--Sobic007G212600 Sobic006G116700 Sobic006G116700 Sobic003G322400--Sobic006G116700 Sobic001G054900 Sobic001G054900 Sobic003G322400--Sobic001G054900 Sobic003G322400--Sobic003G408100 Sobic003G322400--Sobic001G374700 Sobic002G200600 Sobic002G200600 Sobic003G322400--Sobic002G200600 Sobic007G184600 Sobic007G184600 Sobic003G322400--Sobic007G184600 Sobic009G163800--Sobic009G166500 Sobic009G163800--Sobic009G050300 Sobic009G163800--Sobic003G346600 Sobic007G138700 Sobic007G138700 Sobic009G163800--Sobic007G138700 Sobic009G163800--Sobic006G047400 Sobic009G163800--Sobic003G408100 Sobic004G331400 Sobic004G331400 Sobic009G163800--Sobic004G331400 Sobic009G163800--Sobic002G081600 Sobic009G163800--Sobic001G091801 Sobic004G145801--Sobic001G091801 Sobic004G145801--Sobic004G104100 Sobic004G145801--Sobic005G019700 Sobic004G145801--Sobic007G212600 Sobic010G230700 Sobic010G230700 Sobic004G145801--Sobic010G230700 Sobic004G103800 Sobic004G103800 Sobic004G145801--Sobic004G103800 Sobic004G280700 Sobic004G280700 Sobic004G145801--Sobic004G280700 Sobic004G145801--Sobic001G054900 Sobic004G104300 Sobic004G104300 Sobic004G145801--Sobic004G104300 Sobic001G374700--Sobic002G175100 Sobic001G374700--Sobic007G184600 Sobic001G402050 Sobic001G402050 Sobic001G374700--Sobic001G402050 Sobic001G374700--Sobic002G081600 Sobic001G374700--Sobic006G047400 Sobic001G374700--Sobic009G215200 Sobic001G374700--Sobic002G200600 Sobic001G374700--Sobic006G116700 Sobic001G374700--Sobic001G493001
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.