Gene annotation
Transcriptome id Sobic.007G045700.1
Synonym Sb07g003770
Functional annotation 60S ribosomal protein L34, putative, expressed
UniProt C5YH02
Pfam PF01199
Panther DB PTHR10759 PTHR10759:SF11
NCBI CDD KOG1790; 60s ribosomal protein L34
KEGG Orthology K02915; RP-L34e, large subunit ribosomal protein L34e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT1G26880 : Ribosomal protein L34e superfamily protein
RAP-DB (Rice) LOC_Os08g06040.1 : 60S ribosomal protein L34, putative, expressed
MaizeGDB (Corn) Zm00025a030089 , Zm00025a055164 , Zm00025a031158
Brachypodium KQJ95340 , KQJ95336
Barley HORVU7Hr1G071240.1
Wheat TraesCS2A02G339200 , TraesCS2D02G323900 , TraesCS2B02G342800 , TraesCS7D02G296300 , TraesCS5D02G239800 , TraesCS5A02G227800 , TraesCS5B02G226600 , TraesCS7B02G201400
Populus -


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cDNA sequences
Sobic.007G045700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G177700 ribosomal protein L24, putative, expressed K02896: RP-L24e, large subunit ribosomal protein L24e
2 Sobic.004G271400 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
3 Sobic.003G322400 40S ribosomal protein S25, putative, expressed K02975: RP-S25e, small subunit ribosomal protein S25e
4 Sobic.005G195301 - K02980: RP-S29e, small subunit ribosomal protein S29e
5 Sobic.003G152600 40S ribosomal protein S27a, putative, expressed K02977: RP-S27Ae, RPS27A, ubiquitin-small subunit ribosomal protein S27Ae
6 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
7 Sobic.006G260400 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2
8 Sobic.004G331400 60S ribosomal protein L39, putative, expressed K02924: RP-L39e, large subunit ribosomal protein L39e
9 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
10 Sobic.003G346600 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
11 Sobic.006G147000 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
12 Sobic.003G408100 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e
13 Sobic.004G198500 Brix domain containing protein, putative, expressed K14820: BRX1, ribosome biogenesis protein BRX1
14 Sobic.010G060500 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
15 Sobic.009G105600 60S ribosomal protein L29-2, putative, expressed K02905: RP-L29e, large subunit ribosomal protein L29e
16 Sobic.007G138700 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
17 Sobic.001G376600 60S ribosomal protein L22-2, putative, expressed K02891: RP-L22e, large subunit ribosomal protein L22e
18 Sobic.002G414700 60S ribosomal protein L22-2, putative, expressed K02891: RP-L22e, large subunit ribosomal protein L22e
19 Sobic.004G322200 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
20 Sobic.004G335600 40S ribosomal protein S30, putative, expressed K02983: RP-S30e, small subunit ribosomal protein S30e


Gene co-expression network
sample Sobic007G045700 Sobic007G045700 Sobic009G177700 Sobic009G177700 Sobic007G045700--Sobic009G177700 Sobic004G271400 Sobic004G271400 Sobic007G045700--Sobic004G271400 Sobic003G322400 Sobic003G322400 Sobic007G045700--Sobic003G322400 Sobic005G195301 Sobic005G195301 Sobic007G045700--Sobic005G195301 Sobic003G152600 Sobic003G152600 Sobic007G045700--Sobic003G152600 Sobic009G163800 Sobic009G163800 Sobic007G045700--Sobic009G163800 Sobic006G260400 Sobic006G260400 Sobic007G045700--Sobic006G260400 Sobic004G331400 Sobic004G331400 Sobic007G045700--Sobic004G331400 Sobic009G050300 Sobic009G050300 Sobic007G045700--Sobic009G050300 Sobic009G177700--Sobic007G045700 Sobic004G335600 Sobic004G335600 Sobic009G177700--Sobic004G335600 Sobic009G177700--Sobic004G271400 Sobic009G177700--Sobic005G195301 Sobic009G177700--Sobic003G152600 Sobic009G177700--Sobic003G322400 Sobic009G105600 Sobic009G105600 Sobic009G177700--Sobic009G105600 Sobic006G147000 Sobic006G147000 Sobic009G177700--Sobic006G147000 Sobic003G408100 Sobic003G408100 Sobic009G177700--Sobic003G408100 Sobic004G271400--Sobic003G152600 Sobic002G414700 Sobic002G414700 Sobic004G271400--Sobic002G414700 Sobic004G271400--Sobic003G322400 Sobic001G054900 Sobic001G054900 Sobic004G271400--Sobic001G054900 Sobic005G019700 Sobic005G019700 Sobic004G271400--Sobic005G019700 Sobic004G271400--Sobic009G050300 Sobic004G271400--Sobic004G331400 Sobic004G008400 Sobic004G008400 Sobic004G271400--Sobic004G008400 Sobic007G178600 Sobic007G178600 Sobic004G271400--Sobic007G178600 Sobic003G322400--Sobic009G050300 Sobic001G091801 Sobic001G091801 Sobic003G322400--Sobic001G091801 Sobic007G212600 Sobic007G212600 Sobic003G322400--Sobic007G212600 Sobic006G116700 Sobic006G116700 Sobic003G322400--Sobic006G116700 Sobic003G322400--Sobic001G054900 Sobic003G322400--Sobic003G408100 Sobic001G374700 Sobic001G374700 Sobic003G322400--Sobic001G374700 Sobic002G200600 Sobic002G200600 Sobic003G322400--Sobic002G200600 Sobic007G184600 Sobic007G184600 Sobic003G322400--Sobic007G184600 Sobic005G195301--Sobic007G212600 Sobic009G166500 Sobic009G166500 Sobic005G195301--Sobic009G166500 Sobic006G047400 Sobic006G047400 Sobic005G195301--Sobic006G047400 Sobic005G195301--Sobic001G091801 Sobic003G321700 Sobic003G321700 Sobic005G195301--Sobic003G321700 Sobic005G195301--Sobic003G322400 Sobic005G195301--Sobic009G163800 Sobic004G145801 Sobic004G145801 Sobic005G195301--Sobic004G145801 Sobic005G195301--Sobic001G374700 Sobic003G152600--Sobic003G408100 Sobic003G152600--Sobic001G054900 Sobic003G152600--Sobic004G271400 Sobic003G152600--Sobic004G331400 Sobic003G152600--Sobic003G322400 Sobic001G376600 Sobic001G376600 Sobic003G152600--Sobic001G376600 Sobic004G103800 Sobic004G103800 Sobic003G152600--Sobic004G103800 Sobic010G206200 Sobic010G206200 Sobic003G152600--Sobic010G206200 Sobic003G152600--Sobic001G374700 Sobic009G163800--Sobic009G166500 Sobic009G163800--Sobic009G050300 Sobic003G346600 Sobic003G346600 Sobic009G163800--Sobic003G346600 Sobic007G138700 Sobic007G138700 Sobic009G163800--Sobic007G138700 Sobic009G163800--Sobic006G047400 Sobic009G163800--Sobic003G408100 Sobic009G163800--Sobic004G331400 Sobic002G081600 Sobic002G081600 Sobic009G163800--Sobic002G081600 Sobic009G163800--Sobic001G091801 Sobic006G260400--Sobic004G331400 Sobic002G255300 Sobic002G255300 Sobic006G260400--Sobic002G255300 Sobic006G260400--Sobic003G346600 Sobic006G260400--Sobic007G178600 Sobic006G260400--Sobic010G206200 Sobic006G260400--Sobic009G163800 Sobic010G166100 Sobic010G166100 Sobic006G260400--Sobic010G166100 Sobic006G260400--Sobic001G376600 Sobic006G221200 Sobic006G221200 Sobic006G260400--Sobic006G221200 Sobic002G175100 Sobic002G175100 Sobic004G331400--Sobic002G175100 Sobic004G331400--Sobic001G376600 Sobic004G331400--Sobic009G163800 Sobic009G105700 Sobic009G105700 Sobic004G331400--Sobic009G105700 Sobic004G331400--Sobic003G408100 Sobic004G331400--Sobic003G346600 Sobic004G331400--Sobic009G050300 Sobic004G331400--Sobic007G178600 Sobic004G331400--Sobic001G091801 Sobic009G050300--Sobic006G116700 Sobic009G050300--Sobic004G008400 Sobic007G197800 Sobic007G197800 Sobic009G050300--Sobic007G197800 Sobic009G050300--Sobic002G081600 Sobic009G050300--Sobic003G346600 Sobic009G215200 Sobic009G215200 Sobic009G050300--Sobic009G215200 Sobic001G403500 Sobic001G403500 Sobic009G050300--Sobic001G403500 Sobic001G018900 Sobic001G018900 Sobic009G050300--Sobic001G018900 Sobic002G379500 Sobic002G379500 Sobic009G050300--Sobic002G379500
Octagon: transcription factors


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