Gene annotation
Transcriptome id Sobic.004G335600.1
Synonym Sb04g036360
Functional annotation 40S ribosomal protein S30, putative, expressed
UniProt C5XV41
Pfam PF04758
Panther DB PTHR12650
NCBI CDD KOG0009; Ubiquitin-like/40S ribosomal S30 protein fusion
KEGG Orthology K02983; RP-S30e, small subunit ribosomal protein S30e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT4G29390 : Ribosomal protein S30 family protein
RAP-DB (Rice) LOC_Os02g56014.1 : 40S ribosomal protein S30, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK19402 , KQK01212
Barley HORVU7Hr1G027760.2 , HORVU7Hr1G027760.1
Wheat TraesCS6B02G410000 , TraesCS6D02G356300 , TraesCS7D02G132800 , TraesCS6A02G372200 , TraesCS7B02G034200
Populus -


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cDNA sequences
Sobic.004G335600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G271400 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
2 Sobic.002G414700 60S ribosomal protein L22-2, putative, expressed K02891: RP-L22e, large subunit ribosomal protein L22e
3 Sobic.009G177700 ribosomal protein L24, putative, expressed K02896: RP-L24e, large subunit ribosomal protein L24e
4 Sobic.003G152600 40S ribosomal protein S27a, putative, expressed K02977: RP-S27Ae, RPS27A, ubiquitin-small subunit ribosomal protein S27Ae
5 Sobic.004G099500 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
6 Sobic.009G105600 60S ribosomal protein L29-2, putative, expressed K02905: RP-L29e, large subunit ribosomal protein L29e
7 Sobic.010G057100 expressed protein K02983: RP-S30e, small subunit ribosomal protein S30e
8 Sobic.008G172100 ribosomal protein, putative, expressed K02874: RP-L14, MRPL14, large subunit ribosomal protein L14
9 Sobic.007G045700 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
10 Sobic.003G322532 - K02975: RP-S25e, small subunit ribosomal protein S25e
11 Sobic.001G175300 ribosomal protein L24, putative, expressed K02896: RP-L24e, large subunit ribosomal protein L24e
12 Sobic.003G322400 40S ribosomal protein S25, putative, expressed K02975: RP-S25e, small subunit ribosomal protein S25e
13 Sobic.001G313200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
14 Sobic.007G211700 60S ribosomal protein L31, putative, expressed K02910: RP-L31e, large subunit ribosomal protein L31e
15 Sobic.009G242300 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2
16 Sobic.003G408100 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e
17 Sobic.001G076800 expressed protein -
18 Sobic.005G019700 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
19 Sobic.001G402050 - K02979: RP-S28e, small subunit ribosomal protein S28e
20 Sobic.006G260400 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2


Gene co-expression network
sample Sobic004G335600 Sobic004G335600 Sobic004G271400 Sobic004G271400 Sobic004G335600--Sobic004G271400 Sobic002G414700 Sobic002G414700 Sobic004G335600--Sobic002G414700 Sobic009G177700 Sobic009G177700 Sobic004G335600--Sobic009G177700 Sobic003G152600 Sobic003G152600 Sobic004G335600--Sobic003G152600 Sobic004G099500 Sobic004G099500 Sobic004G335600--Sobic004G099500 Sobic009G105600 Sobic009G105600 Sobic004G335600--Sobic009G105600 Sobic010G057100 Sobic010G057100 Sobic004G335600--Sobic010G057100 Sobic008G172100 Sobic008G172100 Sobic004G335600--Sobic008G172100 Sobic007G045700 Sobic007G045700 Sobic004G335600--Sobic007G045700 Sobic004G271400--Sobic003G152600 Sobic004G271400--Sobic002G414700 Sobic003G322400 Sobic003G322400 Sobic004G271400--Sobic003G322400 Sobic001G054900 Sobic001G054900 Sobic004G271400--Sobic001G054900 Sobic005G019700 Sobic005G019700 Sobic004G271400--Sobic005G019700 Sobic009G050300 Sobic009G050300 Sobic004G271400--Sobic009G050300 Sobic004G331400 Sobic004G331400 Sobic004G271400--Sobic004G331400 Sobic004G008400 Sobic004G008400 Sobic004G271400--Sobic004G008400 Sobic007G178600 Sobic007G178600 Sobic004G271400--Sobic007G178600 Sobic002G414700--Sobic004G271400 Sobic001G402050 Sobic001G402050 Sobic002G414700--Sobic001G402050 Sobic001G508900 Sobic001G508900 Sobic002G414700--Sobic001G508900 Sobic007G184600 Sobic007G184600 Sobic002G414700--Sobic007G184600 Sobic001G175300 Sobic001G175300 Sobic002G414700--Sobic001G175300 Sobic001G493001 Sobic001G493001 Sobic002G414700--Sobic001G493001 Sobic003G078200 Sobic003G078200 Sobic002G414700--Sobic003G078200 Sobic004G055100 Sobic004G055100 Sobic002G414700--Sobic004G055100 Sobic006G067800 Sobic006G067800 Sobic002G414700--Sobic006G067800 Sobic009G177700--Sobic007G045700 Sobic009G177700--Sobic004G335600 Sobic009G177700--Sobic004G271400 Sobic005G195301 Sobic005G195301 Sobic009G177700--Sobic005G195301 Sobic009G177700--Sobic003G152600 Sobic009G177700--Sobic003G322400 Sobic009G177700--Sobic009G105600 Sobic006G147000 Sobic006G147000 Sobic009G177700--Sobic006G147000 Sobic003G408100 Sobic003G408100 Sobic009G177700--Sobic003G408100 Sobic003G152600--Sobic003G408100 Sobic003G152600--Sobic001G054900 Sobic003G152600--Sobic004G271400 Sobic003G152600--Sobic004G331400 Sobic003G152600--Sobic003G322400 Sobic001G376600 Sobic001G376600 Sobic003G152600--Sobic001G376600 Sobic004G103800 Sobic004G103800 Sobic003G152600--Sobic004G103800 Sobic010G206200 Sobic010G206200 Sobic003G152600--Sobic010G206200 Sobic001G374700 Sobic001G374700 Sobic003G152600--Sobic001G374700 Sobic004G099500--Sobic010G057100 Sobic004G099500--Sobic004G335600 Sobic009G015000 Sobic009G015000 Sobic004G099500--Sobic009G015000 Sobic003G338966 Sobic003G338966 Sobic004G099500--Sobic003G338966 Sobic004G099500--Sobic008G172100 Sobic004G099500--Sobic007G045700 Sobic003G057366 Sobic003G057366 Sobic004G099500--Sobic003G057366 Sobic004G099500--Sobic004G271400 Sobic003G322532 Sobic003G322532 Sobic004G099500--Sobic003G322532 Sobic009G105700 Sobic009G105700 Sobic009G105600--Sobic009G105700 Sobic009G105600--Sobic004G331400 Sobic002G175100 Sobic002G175100 Sobic009G105600--Sobic002G175100 Sobic009G105600--Sobic004G271400 Sobic009G105600--Sobic002G414700 Sobic009G105600--Sobic007G184600 Sobic009G105600--Sobic003G322400 Sobic006G047400 Sobic006G047400 Sobic009G105600--Sobic006G047400 Sobic009G105600--Sobic001G374700 Sobic010G057100--Sobic004G099500 Sobic010G057100--Sobic009G015000 Sobic010G057100--Sobic004G335600 Sobic010G057100--Sobic003G057366 Sobic010G057100--Sobic003G322532 Sobic004G128000 Sobic004G128000 Sobic010G057100--Sobic004G128000 Sobic010G057100--Sobic009G177700 Sobic010G057100--Sobic007G045700 Sobic001G313200 Sobic001G313200 Sobic010G057100--Sobic001G313200 Sobic008G172100--Sobic004G335600 Sobic008G172100--Sobic001G175300 Sobic008G172100--Sobic004G271400 Sobic008G172100--Sobic004G099500 Sobic008G172100--Sobic002G414700 Sobic008G172100--Sobic003G338966 Sobic009G242300 Sobic009G242300 Sobic008G172100--Sobic009G242300 Sobic008G172100--Sobic001G508900 Sobic008G172100--Sobic007G045700 Sobic007G045700--Sobic009G177700 Sobic007G045700--Sobic004G271400 Sobic007G045700--Sobic003G322400 Sobic007G045700--Sobic005G195301 Sobic007G045700--Sobic003G152600 Sobic009G163800 Sobic009G163800 Sobic007G045700--Sobic009G163800 Sobic006G260400 Sobic006G260400 Sobic007G045700--Sobic006G260400 Sobic007G045700--Sobic004G331400 Sobic007G045700--Sobic009G050300
Octagon: transcription factors


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