Gene annotation
Transcriptome id Sobic.008G172100.1
Synonym Sb08g021680
Functional annotation ribosomal protein, putative, expressed
UniProt C5YS26 , A0A109ND23 , A1E9W1
Pfam PF00238
Panther DB PTHR11761 PTHR11761:SF12
NCBI CDD KOG0901; 60S ribosomal protein L14/L17/L23
KEGG Orthology K02874; RP-L14, MRPL14, large subunit ribosomal protein L14
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT5G46160 : Ribosomal protein L14p/L23e family protein
RAP-DB (Rice) LOC_Os12g42180.1 : ribosomal protein, putative, expressed
MaizeGDB (Corn) Zm00025a035366 , Zm00025a025164
Brachypodium KQJ85772 , KQK02687
Barley HORVU6Hr1G042660.2 , HORVU6Hr1G042660.1 , HORVU6Hr1G042660.4 , HORVU5Hr1G030840.1 , HORVU5Hr1G030940.1 , HORVU2Hr1G047730.1 , HORVU1Hr1G030610.4 , HORVU1Hr1G030610.1
Wheat TraesCS2B02G575900 , TraesCS2D02G546300
Populus -


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cDNA sequences
Sobic.008G172100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G335600 40S ribosomal protein S30, putative, expressed K02983: RP-S30e, small subunit ribosomal protein S30e
2 Sobic.001G175300 ribosomal protein L24, putative, expressed K02896: RP-L24e, large subunit ribosomal protein L24e
3 Sobic.004G271400 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
4 Sobic.004G099500 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
5 Sobic.002G414700 60S ribosomal protein L22-2, putative, expressed K02891: RP-L22e, large subunit ribosomal protein L22e
6 Sobic.003G338966 - -
7 Sobic.009G242300 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2
8 Sobic.001G508900 60S ribosomal protein L21-2, putative, expressed K02889: RP-L21e, large subunit ribosomal protein L21e
9 Sobic.007G045700 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
10 Sobic.002G348100 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
11 Sobic.007G138700 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
12 Sobic.003G152600 40S ribosomal protein S27a, putative, expressed K02977: RP-S27Ae, RPS27A, ubiquitin-small subunit ribosomal protein S27Ae
13 Sobic.006G057200 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
14 Sobic.010G057100 expressed protein K02983: RP-S30e, small subunit ribosomal protein S30e
15 Sobic.002G372400 60S ribosomal protein, putative, expressed K02900: RP-L27Ae, large subunit ribosomal protein L27Ae
16 Sobic.003G408100 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e
17 Sobic.003G078200 ribosomal protein L24, putative, expressed K02898: RP-L26e, large subunit ribosomal protein L26e
18 Sobic.010G106200 signal recognition particle 9 kDa protein, putative, expressed K03109: signal recognition particle subunit SRP9
19 Sobic.009G177700 ribosomal protein L24, putative, expressed K02896: RP-L24e, large subunit ribosomal protein L24e
20 Sobic.004G244800 ribosomal protein, putative, expressed K02995: RP-S8e, small subunit ribosomal protein S8e


Gene co-expression network
sample Sobic008G172100 Sobic008G172100 Sobic004G335600 Sobic004G335600 Sobic008G172100--Sobic004G335600 Sobic001G175300 Sobic001G175300 Sobic008G172100--Sobic001G175300 Sobic004G271400 Sobic004G271400 Sobic008G172100--Sobic004G271400 Sobic004G099500 Sobic004G099500 Sobic008G172100--Sobic004G099500 Sobic002G414700 Sobic002G414700 Sobic008G172100--Sobic002G414700 Sobic003G338966 Sobic003G338966 Sobic008G172100--Sobic003G338966 Sobic009G242300 Sobic009G242300 Sobic008G172100--Sobic009G242300 Sobic001G508900 Sobic001G508900 Sobic008G172100--Sobic001G508900 Sobic007G045700 Sobic007G045700 Sobic008G172100--Sobic007G045700 Sobic004G335600--Sobic004G271400 Sobic004G335600--Sobic002G414700 Sobic009G177700 Sobic009G177700 Sobic004G335600--Sobic009G177700 Sobic003G152600 Sobic003G152600 Sobic004G335600--Sobic003G152600 Sobic004G335600--Sobic004G099500 Sobic009G105600 Sobic009G105600 Sobic004G335600--Sobic009G105600 Sobic010G057100 Sobic010G057100 Sobic004G335600--Sobic010G057100 Sobic004G335600--Sobic008G172100 Sobic004G335600--Sobic007G045700 Sobic010G206200 Sobic010G206200 Sobic001G175300--Sobic010G206200 Sobic001G403500 Sobic001G403500 Sobic001G175300--Sobic001G403500 Sobic004G198400 Sobic004G198400 Sobic001G175300--Sobic004G198400 Sobic009G050300 Sobic009G050300 Sobic001G175300--Sobic009G050300 Sobic003G078200 Sobic003G078200 Sobic001G175300--Sobic003G078200 Sobic009G054800 Sobic009G054800 Sobic001G175300--Sobic009G054800 Sobic002G286900 Sobic002G286900 Sobic001G175300--Sobic002G286900 Sobic001G175300--Sobic009G242300 Sobic002G372400 Sobic002G372400 Sobic001G175300--Sobic002G372400 Sobic004G271400--Sobic003G152600 Sobic004G271400--Sobic002G414700 Sobic003G322400 Sobic003G322400 Sobic004G271400--Sobic003G322400 Sobic001G054900 Sobic001G054900 Sobic004G271400--Sobic001G054900 Sobic005G019700 Sobic005G019700 Sobic004G271400--Sobic005G019700 Sobic004G271400--Sobic009G050300 Sobic004G331400 Sobic004G331400 Sobic004G271400--Sobic004G331400 Sobic004G008400 Sobic004G008400 Sobic004G271400--Sobic004G008400 Sobic007G178600 Sobic007G178600 Sobic004G271400--Sobic007G178600 Sobic004G099500--Sobic010G057100 Sobic004G099500--Sobic004G335600 Sobic009G015000 Sobic009G015000 Sobic004G099500--Sobic009G015000 Sobic004G099500--Sobic003G338966 Sobic004G099500--Sobic008G172100 Sobic004G099500--Sobic007G045700 Sobic003G057366 Sobic003G057366 Sobic004G099500--Sobic003G057366 Sobic004G099500--Sobic004G271400 Sobic003G322532 Sobic003G322532 Sobic004G099500--Sobic003G322532 Sobic002G414700--Sobic004G271400 Sobic001G402050 Sobic001G402050 Sobic002G414700--Sobic001G402050 Sobic002G414700--Sobic001G508900 Sobic007G184600 Sobic007G184600 Sobic002G414700--Sobic007G184600 Sobic002G414700--Sobic001G175300 Sobic001G493001 Sobic001G493001 Sobic002G414700--Sobic001G493001 Sobic002G414700--Sobic003G078200 Sobic004G055100 Sobic004G055100 Sobic002G414700--Sobic004G055100 Sobic006G067800 Sobic006G067800 Sobic002G414700--Sobic006G067800 Sobic003G338966--Sobic004G099500 Sobic003G338966--Sobic008G172100 Sobic004G244800 Sobic004G244800 Sobic003G338966--Sobic004G244800 Sobic006G057200 Sobic006G057200 Sobic003G338966--Sobic006G057200 Sobic003G338966--Sobic009G242300 Sobic003G338966--Sobic001G175300 Sobic003G338966--Sobic010G057100 Sobic007G198000 Sobic007G198000 Sobic003G338966--Sobic007G198000 Sobic002G291066 Sobic002G291066 Sobic003G338966--Sobic002G291066 Sobic009G242300--Sobic001G175300 Sobic007G197800 Sobic007G197800 Sobic009G242300--Sobic007G197800 Sobic009G242300--Sobic006G067800 Sobic009G242300--Sobic009G050300 Sobic009G242300--Sobic004G008400 Sobic002G379500 Sobic002G379500 Sobic009G242300--Sobic002G379500 Sobic001G018900 Sobic001G018900 Sobic009G242300--Sobic001G018900 Sobic009G242300--Sobic001G402050 Sobic009G242300--Sobic002G286900 Sobic001G508900--Sobic007G178600 Sobic001G508900--Sobic002G414700 Sobic001G508900--Sobic001G175300 Sobic010G251600 Sobic010G251600 Sobic001G508900--Sobic010G251600 Sobic003G436700 Sobic003G436700 Sobic001G508900--Sobic003G436700 Sobic001G508900--Sobic010G206200 Sobic001G508900--Sobic003G078200 Sobic001G508900--Sobic004G271400 Sobic001G508900--Sobic004G008400 Sobic007G045700--Sobic009G177700 Sobic007G045700--Sobic004G271400 Sobic007G045700--Sobic003G322400 Sobic005G195301 Sobic005G195301 Sobic007G045700--Sobic005G195301 Sobic007G045700--Sobic003G152600 Sobic009G163800 Sobic009G163800 Sobic007G045700--Sobic009G163800 Sobic006G260400 Sobic006G260400 Sobic007G045700--Sobic006G260400 Sobic007G045700--Sobic004G331400 Sobic007G045700--Sobic009G050300
Octagon: transcription factors


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