Gene annotation
Transcriptome id Sobic.003G338966.1
Synonym -
Functional annotation -
UniProt A0A1W0W072
Pfam PF03297
Panther DB PTHR12850
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G34555 : Ribosomal protein S25 family protein
RAP-DB (Rice) LOC_Os08g44480.1 : 40S ribosomal protein S25, putative, expressed
MaizeGDB (Corn) Zm00025a001729 , Zm00025a027231 , Zm00025a039866 , Zm00025a030548 , Zm00025a005600
Brachypodium KQK02321 , KQJ91597 , KQJ99374
Barley HORVU4Hr1G001220.2 , HORVU4Hr1G001220.1 , HORVU4Hr1G001220.3 , HORVU4Hr1G001220.4 , HORVU4Hr1G001220.6
Wheat TraesCS5A02G101500 , TraesCS2D02G408800 , TraesCS3B02G223500 , TraesCS4A02G307100 , TraesCS2A02G411300 , TraesCS4B02G008900 , TraesCS7D02G487600 , TraesCS3B02G339900 , TraesCS7B02G407300 , TraesCS4A02G307100 , TraesCS2A02G557500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G099500 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
2 Sobic.008G172100 ribosomal protein, putative, expressed K02874: RP-L14, MRPL14, large subunit ribosomal protein L14
3 Sobic.004G244800 ribosomal protein, putative, expressed K02995: RP-S8e, small subunit ribosomal protein S8e
4 Sobic.006G057200 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
5 Sobic.009G242300 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2
6 Sobic.001G175300 ribosomal protein L24, putative, expressed K02896: RP-L24e, large subunit ribosomal protein L24e
7 Sobic.010G057100 expressed protein K02983: RP-S30e, small subunit ribosomal protein S30e
8 Sobic.007G198000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AIR12, putative, expressed -
9 Sobic.002G291066 - K11254: histone H4
10 Sobic.002G414700 60S ribosomal protein L22-2, putative, expressed K02891: RP-L22e, large subunit ribosomal protein L22e
11 Sobic.010G076400 40S ribosomal protein S17, putative, expressed K02962: RP-S17e, small subunit ribosomal protein S17e
12 Sobic.003G322532 - K02975: RP-S25e, small subunit ribosomal protein S25e
13 Sobic.003G057100 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
14 Sobic.009G167500 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
15 Sobic.002G276000 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
16 Sobic.004G335600 40S ribosomal protein S30, putative, expressed K02983: RP-S30e, small subunit ribosomal protein S30e
17 Sobic.004G271400 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
18 Sobic.003G078200 ribosomal protein L24, putative, expressed K02898: RP-L26e, large subunit ribosomal protein L26e
19 Sobic.004G055100 60S ribosomal protein, putative, expressed K02900: RP-L27Ae, large subunit ribosomal protein L27Ae
20 Sobic.007G045700 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e


Gene co-expression network
sample Sobic003G338966 Sobic003G338966 Sobic004G099500 Sobic004G099500 Sobic003G338966--Sobic004G099500 Sobic008G172100 Sobic008G172100 Sobic003G338966--Sobic008G172100 Sobic004G244800 Sobic004G244800 Sobic003G338966--Sobic004G244800 Sobic006G057200 Sobic006G057200 Sobic003G338966--Sobic006G057200 Sobic009G242300 Sobic009G242300 Sobic003G338966--Sobic009G242300 Sobic001G175300 Sobic001G175300 Sobic003G338966--Sobic001G175300 Sobic010G057100 Sobic010G057100 Sobic003G338966--Sobic010G057100 Sobic007G198000 Sobic007G198000 Sobic003G338966--Sobic007G198000 Sobic002G291066 Sobic002G291066 Sobic003G338966--Sobic002G291066 Sobic004G099500--Sobic010G057100 Sobic004G335600 Sobic004G335600 Sobic004G099500--Sobic004G335600 Sobic009G015000 Sobic009G015000 Sobic004G099500--Sobic009G015000 Sobic004G099500--Sobic003G338966 Sobic004G099500--Sobic008G172100 Sobic007G045700 Sobic007G045700 Sobic004G099500--Sobic007G045700 Sobic003G057366 Sobic003G057366 Sobic004G099500--Sobic003G057366 Sobic004G271400 Sobic004G271400 Sobic004G099500--Sobic004G271400 Sobic003G322532 Sobic003G322532 Sobic004G099500--Sobic003G322532 Sobic008G172100--Sobic004G335600 Sobic008G172100--Sobic001G175300 Sobic008G172100--Sobic004G271400 Sobic008G172100--Sobic004G099500 Sobic002G414700 Sobic002G414700 Sobic008G172100--Sobic002G414700 Sobic008G172100--Sobic003G338966 Sobic008G172100--Sobic009G242300 Sobic001G508900 Sobic001G508900 Sobic008G172100--Sobic001G508900 Sobic008G172100--Sobic007G045700 Sobic004G244800--Sobic006G057200 Sobic002G179300 Sobic002G179300 Sobic004G244800--Sobic002G179300 Sobic010G069400 Sobic010G069400 Sobic004G244800--Sobic010G069400 Sobic001G510800 Sobic001G510800 Sobic004G244800--Sobic001G510800 Sobic001G225700 Sobic001G225700 Sobic004G244800--Sobic001G225700 Sobic008G108601 Sobic008G108601 Sobic004G244800--Sobic008G108601 Sobic008G135000 Sobic008G135000 Sobic004G244800--Sobic008G135000 Sobic004G244800--Sobic001G175300 Sobic002G049300 Sobic002G049300 Sobic004G244800--Sobic002G049300 Sobic006G057200--Sobic002G179300 Sobic007G178600 Sobic007G178600 Sobic006G057200--Sobic007G178600 Sobic006G057200--Sobic010G069400 Sobic004G008400 Sobic004G008400 Sobic006G057200--Sobic004G008400 Sobic006G057200--Sobic004G244800 Sobic010G070500 Sobic010G070500 Sobic006G057200--Sobic010G070500 Sobic006G057200--Sobic001G508900 Sobic002G286900 Sobic002G286900 Sobic006G057200--Sobic002G286900 Sobic003G078200 Sobic003G078200 Sobic006G057200--Sobic003G078200 Sobic009G242300--Sobic001G175300 Sobic007G197800 Sobic007G197800 Sobic009G242300--Sobic007G197800 Sobic006G067800 Sobic006G067800 Sobic009G242300--Sobic006G067800 Sobic009G050300 Sobic009G050300 Sobic009G242300--Sobic009G050300 Sobic009G242300--Sobic004G008400 Sobic002G379500 Sobic002G379500 Sobic009G242300--Sobic002G379500 Sobic001G018900 Sobic001G018900 Sobic009G242300--Sobic001G018900 Sobic001G402050 Sobic001G402050 Sobic009G242300--Sobic001G402050 Sobic009G242300--Sobic002G286900 Sobic010G206200 Sobic010G206200 Sobic001G175300--Sobic010G206200 Sobic001G403500 Sobic001G403500 Sobic001G175300--Sobic001G403500 Sobic004G198400 Sobic004G198400 Sobic001G175300--Sobic004G198400 Sobic001G175300--Sobic009G050300 Sobic001G175300--Sobic003G078200 Sobic009G054800 Sobic009G054800 Sobic001G175300--Sobic009G054800 Sobic001G175300--Sobic002G286900 Sobic001G175300--Sobic009G242300 Sobic002G372400 Sobic002G372400 Sobic001G175300--Sobic002G372400 Sobic010G057100--Sobic004G099500 Sobic010G057100--Sobic009G015000 Sobic010G057100--Sobic004G335600 Sobic010G057100--Sobic003G057366 Sobic010G057100--Sobic003G322532 Sobic004G128000 Sobic004G128000 Sobic010G057100--Sobic004G128000 Sobic009G177700 Sobic009G177700 Sobic010G057100--Sobic009G177700 Sobic010G057100--Sobic007G045700 Sobic001G313200 Sobic001G313200 Sobic010G057100--Sobic001G313200 Sobic003G347900 Sobic003G347900 Sobic007G198000--Sobic003G347900 Sobic007G198000--Sobic006G057200 Sobic001G529400 Sobic001G529400 Sobic007G198000--Sobic001G529400 Sobic007G198000--Sobic010G070500 Sobic003G160700 Sobic003G160700 Sobic007G198000--Sobic003G160700 Sobic010G047100 Sobic010G047100 Sobic007G198000--Sobic010G047100 Sobic001G475500 Sobic001G475500 Sobic007G198000--Sobic001G475500 Sobic003G027400 Sobic003G027400 Sobic007G198000--Sobic003G027400 Sobic003G379600 Sobic003G379600 Sobic007G198000--Sobic003G379600 Sobic001G054800 Sobic001G054800 Sobic002G291066--Sobic001G054800 Sobic002G291066--Sobic001G529400 Sobic003G057100 Sobic003G057100 Sobic002G291066--Sobic003G057100 Sobic006G186700 Sobic006G186700 Sobic002G291066--Sobic006G186700 Sobic002G276000 Sobic002G276000 Sobic002G291066--Sobic002G276000 Sobic002G291066--Sobic001G313200 Sobic002G291066--Sobic007G198000 Sobic002G291066--Sobic010G047100 Sobic002G291066--Sobic010G057100
Octagon: transcription factors


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