Gene annotation
Transcriptome id Sobic.004G099500.1
Synonym Sb04g008130
Functional annotation 40S ribosomal protein S24, putative, expressed
UniProt C5XYI5
Pfam PF01282
Panther DB PTHR10496
NCBI CDD KOG3424; 40S ribosomal protein S24
KEGG Orthology K02974; RP-S24e, small subunit ribosomal protein S24e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT5G28060 : Ribosomal protein S24e family protein
RAP-DB (Rice) LOC_Os02g13530.1 : 40S ribosomal protein S24, putative, expressed
MaizeGDB (Corn) Zm00025a027742 , Zm00025a038994 , Zm00025a020117
Brachypodium KQJ94127 , KQK18011
Barley HORVU7Hr1G088580.1 , HORVU2Hr1G055560.1 , HORVU2Hr1G055560.3 , HORVU2Hr1G055560.2 , HORVU3Hr1G068610.2 , HORVU3Hr1G068610.3 , HORVU3Hr1G068610.1 , HORVU3Hr1G068610.4 , HORVU3Hr1G068610.5 , HORVU6Hr1G044840.1 , HORVU6Hr1G044840.3 , HORVU6Hr1G044840.4 , HORVU6Hr1G044840.5 , HORVU1Hr1G044880.1
Wheat TraesCS6D02G177000 , TraesCS6D02G177000 , TraesCS7A02G356300 , TraesCS7B02G271400 , TraesCS7D02G366400 , TraesCS6B02G234000
Populus -


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cDNA sequences
Sobic.004G099500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G057100 expressed protein K02983: RP-S30e, small subunit ribosomal protein S30e
2 Sobic.004G335600 40S ribosomal protein S30, putative, expressed K02983: RP-S30e, small subunit ribosomal protein S30e
3 Sobic.009G015000 expressed protein -
4 Sobic.003G338966 - -
5 Sobic.008G172100 ribosomal protein, putative, expressed K02874: RP-L14, MRPL14, large subunit ribosomal protein L14
6 Sobic.007G045700 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
7 Sobic.003G057366 - K11254: histone H4
8 Sobic.004G271400 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
9 Sobic.003G322532 - K02975: RP-S25e, small subunit ribosomal protein S25e
10 Sobic.004G128000 expressed protein -
11 Sobic.009G177700 ribosomal protein L24, putative, expressed K02896: RP-L24e, large subunit ribosomal protein L24e
12 Sobic.004G259700 60S ribosomal protein L31, putative, expressed K02910: RP-L31e, large subunit ribosomal protein L31e
13 Sobic.002G414700 60S ribosomal protein L22-2, putative, expressed K02891: RP-L22e, large subunit ribosomal protein L22e
14 Sobic.006G057200 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
15 Sobic.007G211700 60S ribosomal protein L31, putative, expressed K02910: RP-L31e, large subunit ribosomal protein L31e
16 Sobic.002G050400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@LTPL78 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
17 Sobic.006G244800 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
18 Sobic.009G221600 zinc finger, C3HC4 type domain containing protein, expressed -
19 Sobic.001G076800 expressed protein -
20 Sobic.001G161601 - K14484: auxin-responsive protein IAA


Gene co-expression network
sample Sobic004G099500 Sobic004G099500 Sobic010G057100 Sobic010G057100 Sobic004G099500--Sobic010G057100 Sobic004G335600 Sobic004G335600 Sobic004G099500--Sobic004G335600 Sobic009G015000 Sobic009G015000 Sobic004G099500--Sobic009G015000 Sobic003G338966 Sobic003G338966 Sobic004G099500--Sobic003G338966 Sobic008G172100 Sobic008G172100 Sobic004G099500--Sobic008G172100 Sobic007G045700 Sobic007G045700 Sobic004G099500--Sobic007G045700 Sobic003G057366 Sobic003G057366 Sobic004G099500--Sobic003G057366 Sobic004G271400 Sobic004G271400 Sobic004G099500--Sobic004G271400 Sobic003G322532 Sobic003G322532 Sobic004G099500--Sobic003G322532 Sobic010G057100--Sobic004G099500 Sobic010G057100--Sobic009G015000 Sobic010G057100--Sobic004G335600 Sobic010G057100--Sobic003G057366 Sobic010G057100--Sobic003G322532 Sobic004G128000 Sobic004G128000 Sobic010G057100--Sobic004G128000 Sobic009G177700 Sobic009G177700 Sobic010G057100--Sobic009G177700 Sobic010G057100--Sobic007G045700 Sobic001G313200 Sobic001G313200 Sobic010G057100--Sobic001G313200 Sobic004G335600--Sobic004G271400 Sobic002G414700 Sobic002G414700 Sobic004G335600--Sobic002G414700 Sobic004G335600--Sobic009G177700 Sobic003G152600 Sobic003G152600 Sobic004G335600--Sobic003G152600 Sobic004G335600--Sobic004G099500 Sobic009G105600 Sobic009G105600 Sobic004G335600--Sobic009G105600 Sobic004G335600--Sobic010G057100 Sobic004G335600--Sobic008G172100 Sobic004G335600--Sobic007G045700 Sobic009G015000--Sobic010G057100 Sobic009G015000--Sobic004G099500 Sobic009G015000--Sobic004G128000 Sobic007G172300 Sobic007G172300 Sobic009G015000--Sobic007G172300 Sobic009G015000--Sobic004G335600 Sobic009G015000--Sobic003G322532 Sobic002G253000 Sobic002G253000 Sobic009G015000--Sobic002G253000 Sobic009G015000--Sobic003G057366 Sobic003G395500 Sobic003G395500 Sobic009G015000--Sobic003G395500 Sobic003G338966--Sobic004G099500 Sobic003G338966--Sobic008G172100 Sobic004G244800 Sobic004G244800 Sobic003G338966--Sobic004G244800 Sobic006G057200 Sobic006G057200 Sobic003G338966--Sobic006G057200 Sobic009G242300 Sobic009G242300 Sobic003G338966--Sobic009G242300 Sobic001G175300 Sobic001G175300 Sobic003G338966--Sobic001G175300 Sobic003G338966--Sobic010G057100 Sobic007G198000 Sobic007G198000 Sobic003G338966--Sobic007G198000 Sobic002G291066 Sobic002G291066 Sobic003G338966--Sobic002G291066 Sobic008G172100--Sobic004G335600 Sobic008G172100--Sobic001G175300 Sobic008G172100--Sobic004G271400 Sobic008G172100--Sobic004G099500 Sobic008G172100--Sobic002G414700 Sobic008G172100--Sobic003G338966 Sobic008G172100--Sobic009G242300 Sobic001G508900 Sobic001G508900 Sobic008G172100--Sobic001G508900 Sobic008G172100--Sobic007G045700 Sobic007G045700--Sobic009G177700 Sobic007G045700--Sobic004G271400 Sobic003G322400 Sobic003G322400 Sobic007G045700--Sobic003G322400 Sobic005G195301 Sobic005G195301 Sobic007G045700--Sobic005G195301 Sobic007G045700--Sobic003G152600 Sobic009G163800 Sobic009G163800 Sobic007G045700--Sobic009G163800 Sobic006G260400 Sobic006G260400 Sobic007G045700--Sobic006G260400 Sobic004G331400 Sobic004G331400 Sobic007G045700--Sobic004G331400 Sobic009G050300 Sobic009G050300 Sobic007G045700--Sobic009G050300 Sobic009G167500 Sobic009G167500 Sobic003G057366--Sobic009G167500 Sobic003G057366--Sobic010G057100 Sobic003G057366--Sobic004G099500 Sobic001G416900 Sobic001G416900 Sobic003G057366--Sobic001G416900 Sobic003G057366--Sobic009G015000 Sobic001G416800 Sobic001G416800 Sobic003G057366--Sobic001G416800 Sobic003G057366--Sobic007G172300 Sobic002G050400 Sobic002G050400 Sobic003G057366--Sobic002G050400 Sobic001G009700 Sobic001G009700 Sobic003G057366--Sobic001G009700 Sobic004G271400--Sobic003G152600 Sobic004G271400--Sobic002G414700 Sobic004G271400--Sobic003G322400 Sobic001G054900 Sobic001G054900 Sobic004G271400--Sobic001G054900 Sobic005G019700 Sobic005G019700 Sobic004G271400--Sobic005G019700 Sobic004G271400--Sobic009G050300 Sobic004G271400--Sobic004G331400 Sobic004G008400 Sobic004G008400 Sobic004G271400--Sobic004G008400 Sobic007G178600 Sobic007G178600 Sobic004G271400--Sobic007G178600 Sobic003G322532--Sobic002G414700 Sobic001G295200 Sobic001G295200 Sobic003G322532--Sobic001G295200 Sobic007G211700 Sobic007G211700 Sobic003G322532--Sobic007G211700 Sobic005G107900 Sobic005G107900 Sobic003G322532--Sobic005G107900 Sobic001G367600 Sobic001G367600 Sobic003G322532--Sobic001G367600 Sobic003G322532--Sobic003G152600 Sobic003G043600 Sobic003G043600 Sobic003G322532--Sobic003G043600 Sobic009G111000 Sobic009G111000 Sobic003G322532--Sobic009G111000 Sobic001G493001 Sobic001G493001 Sobic003G322532--Sobic001G493001
Octagon: transcription factors


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