Gene annotation
Transcriptome id Sobic.004G259700.1
Synonym Sb04g029810
Functional annotation 60S ribosomal protein L31, putative, expressed
UniProt C5XZV4
Pfam PF01198
Panther DB PTHR10956 PTHR10956:SF12
NCBI CDD KOG0893; 60S ribosomal protein L31
KEGG Orthology K02910; RP-L31e, large subunit ribosomal protein L31e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT2G19740 : Ribosomal protein L31e family protein
RAP-DB (Rice) LOC_Os02g48660.1 : 60S ribosomal protein L31, putative, expressed
MaizeGDB (Corn) Zm00025a050628 , Zm00025a032576 , Zm00025a021822
Brachypodium KQK01038 , KQJ98901
Barley HORVU6Hr1G070670.1 , HORVU6Hr1G070670.2 , HORVU6Hr1G070670.3 , HORVU6Hr1G070670.4 , HORVU6Hr1G070670.5
Wheat TraesCS6D02G262100 , TraesCS6B02G310100
Populus -


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cDNA sequences
Sobic.004G259700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G416900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
2 Sobic.009G167500 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
3 Sobic.009G123000 expressed protein -
4 Sobic.004G099500 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
5 Sobic.001G416800 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
6 Sobic.003G127600 ubiquitin-conjugating enzyme, putative, expressed K06688: UBE2C, ubiquitin-conjugating enzyme E2 C
7 Sobic.007G172300 fiber protein Fb14, putative, expressed K03938: NADH dehydrogenase (ubiquinone) Fe-S protein 5
8 Sobic.003G057366 - K11254: histone H4
9 Sobic.007G168400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.009G015000 expressed protein -
11 Sobic.003G338966 - -
12 Sobic.003G395500 expressed protein -
13 Sobic.010G057100 expressed protein K02983: RP-S30e, small subunit ribosomal protein S30e
14 Sobic.005G198300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.003G187100 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
16 Sobic.010G013100 expressed protein -
17 Sobic.001G009700 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
18 Sobic.001G417000 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
19 Sobic.007G005600 expressed protein -
20 Sobic.004G128000 expressed protein -


Gene co-expression network
sample Sobic004G259700 Sobic004G259700 Sobic001G416900 Sobic001G416900 Sobic004G259700--Sobic001G416900 Sobic009G167500 Sobic009G167500 Sobic004G259700--Sobic009G167500 Sobic009G123000 Sobic009G123000 Sobic004G259700--Sobic009G123000 Sobic004G099500 Sobic004G099500 Sobic004G259700--Sobic004G099500 Sobic001G416800 Sobic001G416800 Sobic004G259700--Sobic001G416800 Sobic003G127600 Sobic003G127600 Sobic004G259700--Sobic003G127600 Sobic007G172300 Sobic007G172300 Sobic004G259700--Sobic007G172300 Sobic003G057366 Sobic003G057366 Sobic004G259700--Sobic003G057366 Sobic007G168400 Sobic007G168400 Sobic004G259700--Sobic007G168400 Sobic001G416900--Sobic001G416800 Sobic001G416900--Sobic003G127600 Sobic001G417000 Sobic001G417000 Sobic001G416900--Sobic001G417000 Sobic002G059200 Sobic002G059200 Sobic001G416900--Sobic002G059200 Sobic001G416900--Sobic009G123000 Sobic002G209300 Sobic002G209300 Sobic001G416900--Sobic002G209300 Sobic002G403400 Sobic002G403400 Sobic001G416900--Sobic002G403400 Sobic002G056300 Sobic002G056300 Sobic001G416900--Sobic002G056300 Sobic003G300701 Sobic003G300701 Sobic001G416900--Sobic003G300701 Sobic001G009700 Sobic001G009700 Sobic009G167500--Sobic001G009700 Sobic009G167500--Sobic003G057366 Sobic009G167500--Sobic001G416900 Sobic009G167500--Sobic004G259700 Sobic002G276000 Sobic002G276000 Sobic009G167500--Sobic002G276000 Sobic010G013100 Sobic010G013100 Sobic009G167500--Sobic010G013100 Sobic003G057100 Sobic003G057100 Sobic009G167500--Sobic003G057100 Sobic001G054800 Sobic001G054800 Sobic009G167500--Sobic001G054800 Sobic009G167500--Sobic003G127600 Sobic009G123000--Sobic003G127600 Sobic009G123000--Sobic001G416800 Sobic005G198300 Sobic005G198300 Sobic009G123000--Sobic005G198300 Sobic006G003000 Sobic006G003000 Sobic009G123000--Sobic006G003000 Sobic009G123000--Sobic001G416900 Sobic001G148600 Sobic001G148600 Sobic009G123000--Sobic001G148600 Sobic008G061000 Sobic008G061000 Sobic009G123000--Sobic008G061000 Sobic009G155500 Sobic009G155500 Sobic009G123000--Sobic009G155500 Sobic010G161300 Sobic010G161300 Sobic009G123000--Sobic010G161300 Sobic010G057100 Sobic010G057100 Sobic004G099500--Sobic010G057100 Sobic004G335600 Sobic004G335600 Sobic004G099500--Sobic004G335600 Sobic009G015000 Sobic009G015000 Sobic004G099500--Sobic009G015000 Sobic003G338966 Sobic003G338966 Sobic004G099500--Sobic003G338966 Sobic008G172100 Sobic008G172100 Sobic004G099500--Sobic008G172100 Sobic007G045700 Sobic007G045700 Sobic004G099500--Sobic007G045700 Sobic004G099500--Sobic003G057366 Sobic004G271400 Sobic004G271400 Sobic004G099500--Sobic004G271400 Sobic003G322532 Sobic003G322532 Sobic004G099500--Sobic003G322532 Sobic001G416800--Sobic003G127600 Sobic001G416800--Sobic001G416900 Sobic001G416800--Sobic002G056300 Sobic001G416800--Sobic002G059200 Sobic001G416800--Sobic002G403400 Sobic001G416800--Sobic009G123000 Sobic003G350100 Sobic003G350100 Sobic001G416800--Sobic003G350100 Sobic001G416800--Sobic008G061000 Sobic004G227000 Sobic004G227000 Sobic001G416800--Sobic004G227000 Sobic003G127600--Sobic001G416800 Sobic003G127600--Sobic009G123000 Sobic003G127600--Sobic001G416900 Sobic003G127600--Sobic002G056300 Sobic003G127600--Sobic002G059200 Sobic003G127600--Sobic004G227000 Sobic003G127600--Sobic008G061000 Sobic004G128600 Sobic004G128600 Sobic003G127600--Sobic004G128600 Sobic003G127600--Sobic002G403400 Sobic003G395500 Sobic003G395500 Sobic007G172300--Sobic003G395500 Sobic007G172300--Sobic009G015000 Sobic003G187100 Sobic003G187100 Sobic007G172300--Sobic003G187100 Sobic007G172300--Sobic003G057366 Sobic004G128000 Sobic004G128000 Sobic007G172300--Sobic004G128000 Sobic007G172300--Sobic004G259700 Sobic007G172300--Sobic001G416900 Sobic007G172300--Sobic004G099500 Sobic007G172300--Sobic001G416800 Sobic003G057366--Sobic009G167500 Sobic003G057366--Sobic010G057100 Sobic003G057366--Sobic004G099500 Sobic003G057366--Sobic001G416900 Sobic003G057366--Sobic009G015000 Sobic003G057366--Sobic001G416800 Sobic003G057366--Sobic007G172300 Sobic002G050400 Sobic002G050400 Sobic003G057366--Sobic002G050400 Sobic003G057366--Sobic001G009700 Sobic007G168400--Sobic004G259700 Sobic007G168400--Sobic010G013100 Sobic007G168400--Sobic001G416900 Sobic007G168400--Sobic004G099500 Sobic007G168400--Sobic009G167500 Sobic007G168400--Sobic002G276000 Sobic003G057600 Sobic003G057600 Sobic007G168400--Sobic003G057600 Sobic007G168400--Sobic001G054800 Sobic007G168400--Sobic001G009700
Octagon: transcription factors


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