Gene annotation
Transcriptome id Sobic.001G009700.1
Synonym Sb01g000950, HTA6
Functional annotation Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
UniProt C5WS22
Pfam PF00125 PF16211
Panther DB PTHR23430
NCBI CDD KOG1756; Histone 2A
KEGG Orthology K11251; histone H2A
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT5G02560 : histone H2A 12
RAP-DB (Rice) LOC_Os05g02300.1 : Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a045260 , Zm00025a047800 , Zm00025a028432 , Zm00025a052735 , Zm00025a014436 , Zm00025a007941 , Zm00025a048317 , Zm00025a016321 , Zm00025a040905
Brachypodium KQK11794 , KQK07730 , KQK05873 , KQK15863 , KQK13476 , KQK22303 , KQJ89933 , KQK22304
Barley HORVU3Hr1G014560.1 , HORVU1Hr1G071950.1 , HORVU3Hr1G099160.1 , HORVU5Hr1G109460.1 , HORVU3Hr1G116550.2 , HORVU3Hr1G116550.1 , HORVU5Hr1G109460.2 , HORVU4Hr1G029280.1 , HORVU3Hr1G116550.5 , HORVU3Hr1G116550.4 , HORVU0Hr1G016940.1 , HORVU0Hr1G016940.2 , HORVU0Hr1G016940.3 , HORVU6Hr1G006120.1 , HORVU4Hr1G058940.8 , HORVU6Hr1G006120.2 , HORVU4Hr1G058940.2 , HORVU4Hr1G058940.3 , HORVU6Hr1G092390.1 , HORVU4Hr1G058940.1 , HORVU4Hr1G058940.6 , HORVU4Hr1G058940.7 , HORVU4Hr1G058940.4 , HORVU4Hr1G058940.5 , HORVU7Hr1G100100.3 , HORVU7Hr1G100100.2 , HORVU7Hr1G100100.1 , HORVU7Hr1G117230.2 , HORVU7Hr1G030120.1 , HORVU7Hr1G030120.2 , HORVU0Hr1G013190.1 , HORVU0Hr1G013190.2 , HORVU6Hr1G029220.1 , HORVU7Hr1G112470.1 , HORVU7Hr1G112470.2 , HORVU7Hr1G112470.3 , HORVU7Hr1G117230.1 , HORVU6Hr1G029220.3 , HORVU6Hr1G029220.2 , HORVU6Hr1G003750.1 , HORVU7Hr1G117230.3 , HORVU4Hr1G090910.2 , HORVU5Hr1G069680.1 , HORVU1Hr1G005870.1 , HORVU1Hr1G005870.3 , HORVU1Hr1G005870.2 , HORVU6Hr1G011620.2 , HORVU6Hr1G011620.3 , HORVU6Hr1G011620.1 , HORVU6Hr1G011620.4 , HORVU6Hr1G005960.1 , HORVU6Hr1G005960.2 , HORVU6Hr1G005960.3 , HORVU6Hr1G005960.4 , HORVU6Hr1G005960.5 , HORVU6Hr1G005960.6 , HORVU6Hr1G005960.7 , HORVU6Hr1G005960.8 , HORVU6Hr1G005960.9 , HORVU5Hr1G110680.1 , HORVU3Hr1G116550.3 , HORVU6Hr1G006090.1 , HORVU2Hr1G043860.2 , HORVU2Hr1G043860.1 , HORVU5Hr1G090670.1 , HORVU5Hr1G090670.2 , HORVU6Hr1G006080.2 , HORVU6Hr1G006080.1 , HORVU6Hr1G092280.1 , HORVU4Hr1G058810.1 , HORVU6Hr1G092280.2 , HORVU5Hr1G069690.2 , HORVU5Hr1G069690.1 , HORVU5Hr1G105090.1 , HORVU5Hr1G105090.3 , HORVU5Hr1G105090.4 , HORVU5Hr1G105090.5 , HORVU5Hr1G105090.6 , HORVU1Hr1G071960.2 , HORVU1Hr1G071960.3 , HORVU1Hr1G071960.4 , HORVU6Hr1G011490.4 , HORVU6Hr1G011490.1 , HORVU1Hr1G071960.1 , HORVU6Hr1G011490.3 , HORVU6Hr1G011490.2 , HORVU4Hr1G008800.2 , HORVU4Hr1G008800.1 , HORVU7Hr1G100400.2 , HORVU7Hr1G100400.1 , HORVU6Hr1G006140.2 , HORVU6Hr1G006140.1 , HORVU7Hr1G100120.1 , HORVU7Hr1G100120.3 , HORVU7Hr1G100120.2 , HORVU7Hr1G100120.5 , HORVU7Hr1G100120.4 , HORVU7Hr1G100120.7 , HORVU7Hr1G100120.6 , HORVU7Hr1G100120.9 , HORVU7Hr1G100120.8 , HORVU7Hr1G100120.14 , HORVU7Hr1G100120.11 , HORVU7Hr1G100120.10 , HORVU7Hr1G100120.13 , HORVU7Hr1G100120.12 , HORVU6Hr1G005960.10 , HORVU6Hr1G006130.6 , HORVU6Hr1G006130.7 , HORVU6Hr1G006130.5 , HORVU6Hr1G009020.1 , HORVU6Hr1G005940.6 , HORVU6Hr1G005940.5 , HORVU6Hr1G005940.2 , HORVU6Hr1G005940.3 , HORVU6Hr1G005940.1
Wheat TraesCS6B02G049200 , TraesCS6B02G049000 , TraesCS1B02G049100 , TraesCS5B02G452400 , TraesCS6B02G048700 , TraesCS1A02G038200 , TraesCS1A02G286900 , TraesCS3D02G521700 , TraesCS6B02G082100 , TraesCS6D02G062300 , TraesCS6D02G062800 , TraesCS3A02G534300 , TraesCS1B02G296300 , TraesCS6A02G034600 , TraesCS1B02G357400 , TraesCS6A02G062600 , TraesCS6D02G040700 , TraesCS3D02G539300 , TraesCS7D02G520000 , TraesCS7B02G449800 , TraesCS6A02G075400 , TraesCS4D02G053100 , TraesCS6A02G034300 , TraesCS1A02G038100 , TraesCS2A02G214700 , TraesCS6A02G034900 , TraesCS7B02G050300 , TraesCS6B02G082300 , TraesCS1D02G285800 , TraesCS6B02G082500 , TraesCS6B02G049500 , TraesCS6D02G040800 , TraesCS5B02G473100 , TraesCS6A02G034800 , TraesCS3A02G534100 , TraesCS2B02G239700 , TraesCS6B02G048300 , TraesCS1D02G039900 , TraesCS5D02G474800 , TraesCS6D02G039900 , TraesCS6B02G058400 , TraesCS1B02G048900 , TraesCS6A02G035100 , TraesCS6B02G082400 , TraesCS6D02G040400 , TraesCS6A02G035200 , TraesCS6D02G040300 , TraesCS6B02G048600 , TraesCS6D02G040500 , TraesCS4B02G052900 , TraesCS2D02G220500 , TraesCS6A02G061700 , TraesCS7B02G408300 , TraesCS1D02G039800 , TraesCS3B02G610800 , TraesCS3D02G539700 , TraesCS7B02G408400 , TraesCS6B02G100100 , TraesCS6B02G049400 , TraesCS5A02G462100 , TraesCS6A02G042700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G167500 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
2 Sobic.002G276000 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
3 Sobic.001G054800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AT hook-containing DNA-binding protein, putative, expressed K11275: histone H1/5
4 Sobic.003G057100 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
5 Sobic.002G210500 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
6 Sobic.003G057366 - K11254: histone H4
7 Sobic.010G013100 expressed protein -
8 Sobic.004G099500 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
9 Sobic.003G338966 - -
10 Sobic.007G198000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AIR12, putative, expressed -
11 Sobic.010G047100 histone H3, putative, expressed K11253: histone H3
12 Sobic.007G168400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.002G291066 - K11254: histone H4
14 Sobic.004G259700 60S ribosomal protein L31, putative, expressed K02910: RP-L31e, large subunit ribosomal protein L31e
15 Sobic.001G416900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
16 Sobic.003G347900 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
17 Sobic.004G279601 - K11254: histone H4
18 Sobic.001G205000 ATEB1A-like microtubule associated protein, putative, expressed K10436: microtubule-associated protein, RP/EB family
19 Sobic.010G057100 expressed protein K02983: RP-S30e, small subunit ribosomal protein S30e
20 Sobic.006G244800 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed K13464: jasmonate ZIM domain-containing protein


Gene co-expression network
sample Sobic001G009700 Sobic001G009700 Sobic009G167500 Sobic009G167500 Sobic001G009700--Sobic009G167500 Sobic002G276000 Sobic002G276000 Sobic001G009700--Sobic002G276000 Sobic001G054800 Sobic001G054800 Sobic001G009700--Sobic001G054800 Sobic003G057100 Sobic003G057100 Sobic001G009700--Sobic003G057100 Sobic002G210500 Sobic002G210500 Sobic001G009700--Sobic002G210500 Sobic003G057366 Sobic003G057366 Sobic001G009700--Sobic003G057366 Sobic010G013100 Sobic010G013100 Sobic001G009700--Sobic010G013100 Sobic004G099500 Sobic004G099500 Sobic001G009700--Sobic004G099500 Sobic003G338966 Sobic003G338966 Sobic001G009700--Sobic003G338966 Sobic009G167500--Sobic001G009700 Sobic009G167500--Sobic003G057366 Sobic001G416900 Sobic001G416900 Sobic009G167500--Sobic001G416900 Sobic004G259700 Sobic004G259700 Sobic009G167500--Sobic004G259700 Sobic009G167500--Sobic002G276000 Sobic009G167500--Sobic010G013100 Sobic009G167500--Sobic003G057100 Sobic009G167500--Sobic001G054800 Sobic003G127600 Sobic003G127600 Sobic009G167500--Sobic003G127600 Sobic002G276000--Sobic003G057100 Sobic002G276000--Sobic001G054800 Sobic003G347900 Sobic003G347900 Sobic002G276000--Sobic003G347900 Sobic001G529400 Sobic001G529400 Sobic002G276000--Sobic001G529400 Sobic002G276000--Sobic001G009700 Sobic002G291066 Sobic002G291066 Sobic002G276000--Sobic002G291066 Sobic007G198000 Sobic007G198000 Sobic002G276000--Sobic007G198000 Sobic010G047200 Sobic010G047200 Sobic002G276000--Sobic010G047200 Sobic009G015900 Sobic009G015900 Sobic002G276000--Sobic009G015900 Sobic001G054800--Sobic002G276000 Sobic001G054800--Sobic003G057100 Sobic001G054800--Sobic002G291066 Sobic001G054800--Sobic007G198000 Sobic001G054800--Sobic001G009700 Sobic001G054800--Sobic001G529400 Sobic001G054800--Sobic003G347900 Sobic001G054800--Sobic009G167500 Sobic010G047100 Sobic010G047100 Sobic001G054800--Sobic010G047100 Sobic003G057100--Sobic002G276000 Sobic003G057100--Sobic001G054800 Sobic003G057100--Sobic001G529400 Sobic003G057100--Sobic003G347900 Sobic003G057100--Sobic002G291066 Sobic003G057100--Sobic010G047100 Sobic003G057100--Sobic001G009700 Sobic006G191800 Sobic006G191800 Sobic003G057100--Sobic006G191800 Sobic004G170500 Sobic004G170500 Sobic003G057100--Sobic004G170500 Sobic002G210500--Sobic001G009700 Sobic003G194200 Sobic003G194200 Sobic002G210500--Sobic003G194200 Sobic002G210500--Sobic004G099500 Sobic002G210500--Sobic003G057366 Sobic002G210500--Sobic009G167500 Sobic002G210500--Sobic010G047100 Sobic010G057100 Sobic010G057100 Sobic002G210500--Sobic010G057100 Sobic001G313200 Sobic001G313200 Sobic002G210500--Sobic001G313200 Sobic002G210500--Sobic003G057100 Sobic003G057366--Sobic009G167500 Sobic003G057366--Sobic010G057100 Sobic003G057366--Sobic004G099500 Sobic003G057366--Sobic001G416900 Sobic009G015000 Sobic009G015000 Sobic003G057366--Sobic009G015000 Sobic001G416800 Sobic001G416800 Sobic003G057366--Sobic001G416800 Sobic007G172300 Sobic007G172300 Sobic003G057366--Sobic007G172300 Sobic002G050400 Sobic002G050400 Sobic003G057366--Sobic002G050400 Sobic003G057366--Sobic001G009700 Sobic003G300701 Sobic003G300701 Sobic010G013100--Sobic003G300701 Sobic010G013100--Sobic001G416900 Sobic001G417000 Sobic001G417000 Sobic010G013100--Sobic001G417000 Sobic010G013100--Sobic009G167500 Sobic007G168400 Sobic007G168400 Sobic010G013100--Sobic007G168400 Sobic010G013100--Sobic001G009700 Sobic001G216800 Sobic001G216800 Sobic010G013100--Sobic001G216800 Sobic004G300701 Sobic004G300701 Sobic010G013100--Sobic004G300701 Sobic010G013100--Sobic004G259700 Sobic004G099500--Sobic010G057100 Sobic004G335600 Sobic004G335600 Sobic004G099500--Sobic004G335600 Sobic004G099500--Sobic009G015000 Sobic004G099500--Sobic003G338966 Sobic008G172100 Sobic008G172100 Sobic004G099500--Sobic008G172100 Sobic007G045700 Sobic007G045700 Sobic004G099500--Sobic007G045700 Sobic004G099500--Sobic003G057366 Sobic004G271400 Sobic004G271400 Sobic004G099500--Sobic004G271400 Sobic003G322532 Sobic003G322532 Sobic004G099500--Sobic003G322532 Sobic003G338966--Sobic004G099500 Sobic003G338966--Sobic008G172100 Sobic004G244800 Sobic004G244800 Sobic003G338966--Sobic004G244800 Sobic006G057200 Sobic006G057200 Sobic003G338966--Sobic006G057200 Sobic009G242300 Sobic009G242300 Sobic003G338966--Sobic009G242300 Sobic001G175300 Sobic001G175300 Sobic003G338966--Sobic001G175300 Sobic003G338966--Sobic010G057100 Sobic003G338966--Sobic007G198000 Sobic003G338966--Sobic002G291066
Octagon: transcription factors


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