Gene annotation
Transcriptome id Sobic.001G054800.2
Synonym Sb01g005010
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
AT hook-containing DNA-binding protein, putative, expressed
UniProt A0A1Z5S4I2
Pfam PF00538
Panther DB PTHR11467 PTHR11467:SF54
NCBI CDD -
KEGG Orthology K11275; histone H1/5
Gene Ontology GO:0006334; nucleosome assembly GO:0005634nucleus GO:0003677DNA binding GO:0000786nucleosome


Orthologs (automatic annotation)
TAIR AT2G30620 : winged-helix DNA-binding transcription factor family protein
RAP-DB (Rice) LOC_Os07g08710.1 : AT hook-containing DNA-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a016561 , Zm00025a016562 , Zm00025a008589
Brachypodium KQK12683
Barley HORVU5Hr1G106610.3 , HORVU5Hr1G106610.2 , HORVU5Hr1G106610.1 , HORVU5Hr1G106610.4
Wheat TraesCS5D02G451300 , TraesCS5A02G444300 , TraesCS5B02G449000 , TraesCS5B02G448500
Populus -


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cDNA sequences
Sobic.001G054800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G276000 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
2 Sobic.003G057100 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
3 Sobic.002G291066 - K11254: histone H4
4 Sobic.007G198000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AIR12, putative, expressed -
5 Sobic.001G009700 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
6 Sobic.001G529400 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
7 Sobic.003G347900 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
8 Sobic.009G167500 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
9 Sobic.010G047100 histone H3, putative, expressed K11253: histone H3
10 Sobic.003G057366 - K11254: histone H4
11 Sobic.001G313200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
12 Sobic.010G057100 expressed protein K02983: RP-S30e, small subunit ribosomal protein S30e
13 Sobic.006G186700 histone H1-3(PubMedID : 26465154)@histone H1, putative, expressed K11275: histone H1/5
14 Sobic.006G244800 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
15 Sobic.007G168400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.004G099500 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
17 Sobic.001G205000 ATEB1A-like microtubule associated protein, putative, expressed K10436: microtubule-associated protein, RP/EB family
18 Sobic.001G425300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.006G191800 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
20 Sobic.003G338966 - -


Gene co-expression network
sample Sobic001G054800 Sobic001G054800 Sobic002G276000 Sobic002G276000 Sobic001G054800--Sobic002G276000 Sobic003G057100 Sobic003G057100 Sobic001G054800--Sobic003G057100 Sobic002G291066 Sobic002G291066 Sobic001G054800--Sobic002G291066 Sobic007G198000 Sobic007G198000 Sobic001G054800--Sobic007G198000 Sobic001G009700 Sobic001G009700 Sobic001G054800--Sobic001G009700 Sobic001G529400 Sobic001G529400 Sobic001G054800--Sobic001G529400 Sobic003G347900 Sobic003G347900 Sobic001G054800--Sobic003G347900 Sobic009G167500 Sobic009G167500 Sobic001G054800--Sobic009G167500 Sobic010G047100 Sobic010G047100 Sobic001G054800--Sobic010G047100 Sobic002G276000--Sobic003G057100 Sobic002G276000--Sobic001G054800 Sobic002G276000--Sobic003G347900 Sobic002G276000--Sobic001G529400 Sobic002G276000--Sobic001G009700 Sobic002G276000--Sobic002G291066 Sobic002G276000--Sobic007G198000 Sobic010G047200 Sobic010G047200 Sobic002G276000--Sobic010G047200 Sobic009G015900 Sobic009G015900 Sobic002G276000--Sobic009G015900 Sobic003G057100--Sobic002G276000 Sobic003G057100--Sobic001G054800 Sobic003G057100--Sobic001G529400 Sobic003G057100--Sobic003G347900 Sobic003G057100--Sobic002G291066 Sobic003G057100--Sobic010G047100 Sobic003G057100--Sobic001G009700 Sobic006G191800 Sobic006G191800 Sobic003G057100--Sobic006G191800 Sobic004G170500 Sobic004G170500 Sobic003G057100--Sobic004G170500 Sobic002G291066--Sobic001G054800 Sobic002G291066--Sobic001G529400 Sobic002G291066--Sobic003G057100 Sobic006G186700 Sobic006G186700 Sobic002G291066--Sobic006G186700 Sobic002G291066--Sobic002G276000 Sobic001G313200 Sobic001G313200 Sobic002G291066--Sobic001G313200 Sobic002G291066--Sobic007G198000 Sobic002G291066--Sobic010G047100 Sobic010G057100 Sobic010G057100 Sobic002G291066--Sobic010G057100 Sobic007G198000--Sobic003G347900 Sobic006G057200 Sobic006G057200 Sobic007G198000--Sobic006G057200 Sobic007G198000--Sobic001G529400 Sobic010G070500 Sobic010G070500 Sobic007G198000--Sobic010G070500 Sobic003G160700 Sobic003G160700 Sobic007G198000--Sobic003G160700 Sobic007G198000--Sobic010G047100 Sobic001G475500 Sobic001G475500 Sobic007G198000--Sobic001G475500 Sobic003G027400 Sobic003G027400 Sobic007G198000--Sobic003G027400 Sobic003G379600 Sobic003G379600 Sobic007G198000--Sobic003G379600 Sobic001G009700--Sobic009G167500 Sobic001G009700--Sobic002G276000 Sobic001G009700--Sobic001G054800 Sobic001G009700--Sobic003G057100 Sobic002G210500 Sobic002G210500 Sobic001G009700--Sobic002G210500 Sobic003G057366 Sobic003G057366 Sobic001G009700--Sobic003G057366 Sobic010G013100 Sobic010G013100 Sobic001G009700--Sobic010G013100 Sobic004G099500 Sobic004G099500 Sobic001G009700--Sobic004G099500 Sobic003G338966 Sobic003G338966 Sobic001G009700--Sobic003G338966 Sobic001G529400--Sobic001G313200 Sobic001G529400--Sobic010G047100 Sobic001G529400--Sobic006G191800 Sobic001G529400--Sobic009G015900 Sobic001G529400--Sobic003G347900 Sobic010G221300 Sobic010G221300 Sobic001G529400--Sobic010G221300 Sobic003G078200 Sobic003G078200 Sobic001G529400--Sobic003G078200 Sobic006G137800 Sobic006G137800 Sobic001G529400--Sobic006G137800 Sobic001G529400--Sobic003G057100 Sobic003G347900--Sobic006G057200 Sobic003G347900--Sobic007G198000 Sobic003G347900--Sobic001G313200 Sobic003G347900--Sobic001G529400 Sobic003G347900--Sobic006G191800 Sobic003G347900--Sobic002G276000 Sobic003G347900--Sobic010G047100 Sobic003G347900--Sobic003G078200 Sobic003G347900--Sobic003G057100 Sobic009G167500--Sobic001G009700 Sobic009G167500--Sobic003G057366 Sobic001G416900 Sobic001G416900 Sobic009G167500--Sobic001G416900 Sobic004G259700 Sobic004G259700 Sobic009G167500--Sobic004G259700 Sobic009G167500--Sobic002G276000 Sobic009G167500--Sobic010G013100 Sobic009G167500--Sobic003G057100 Sobic009G167500--Sobic001G054800 Sobic003G127600 Sobic003G127600 Sobic009G167500--Sobic003G127600 Sobic010G047100--Sobic001G313200 Sobic010G047100--Sobic001G529400 Sobic004G041900 Sobic004G041900 Sobic010G047100--Sobic004G041900 Sobic010G047100--Sobic006G191800 Sobic010G047100--Sobic010G221300 Sobic001G031700 Sobic001G031700 Sobic010G047100--Sobic001G031700 Sobic010G047100--Sobic003G160700 Sobic003G322532 Sobic003G322532 Sobic010G047100--Sobic003G322532 Sobic003G125650 Sobic003G125650 Sobic010G047100--Sobic003G125650
Octagon: transcription factors


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