Gene annotation
| Transcriptome id | Sobic.006G186700.1 |
|---|---|
| Synonym | HIS1-3, Sb06g026070 |
| Functional annotation | histone H1-3 (PubMedID : 26465154) histone H1, putative, expressed |
| UniProt | C5YEF5 |
| Pfam | PF00538 |
| Panther DB | PTHR11467 PTHR11467:SF53 |
| NCBI CDD | - |
| KEGG Orthology | K11275; histone H1/5 |
| Gene Ontology | GO:0006334; nucleosome assembly GO:0005634nucleus GO:0003677DNA binding GO:0000786nucleosome |
Orthologs (automatic annotation)
| TAIR | AT2G18050 : histone H1-3 |
|---|---|
| RAP-DB (Rice) | LOC_Os04g18090.1 : histone H1, putative, expressed |
| MaizeGDB (Corn) | Zm00025a010127 |
| Brachypodium | KQJ84145 |
| Barley | HORVU2Hr1G094390.5 , HORVU2Hr1G094390.7 , HORVU2Hr1G094390.6 , HORVU2Hr1G094390.1 , HORVU2Hr1G094400.5 , HORVU2Hr1G094400.4 , HORVU2Hr1G094400.1 , HORVU2Hr1G094390.8 , HORVU2Hr1G094400.3 , HORVU2Hr1G094400.2 |
| Wheat | TraesCS2D02G395400 , TraesCS7D02G061400 , TraesCS4A02G423600 , TraesCS2D02G395200 , TraesCS7A02G067100 , TraesCS7A02G067000 , TraesCS2A02G397400 , TraesCS2B02G415900 , TraesCS2B02G415800 , TraesCS2A02G397700 , TraesCS2A02G397700 , TraesCS2A02G397600 , TraesCS2D02G395300 , TraesCSU02G218900 |
| Populus | - |
JBrowse
| Sobic.006G186700 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G313200 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed | K11254: histone H4 |
| 2 | Sobic.001G372100 | beta-amylase 3(PubMedID : 26465154)@beta-amylase 3(PubMedID : 26465154)@beta-amylase, putative, expressed | - |
| 3 | Sobic.006G274700 | expressed protein | - |
| 4 | Sobic.002G291066 | - | K11254: histone H4 |
| 5 | Sobic.001G529400 | Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed | K11254: histone H4 |
| 6 | Sobic.010G047100 | histone H3, putative, expressed | K11253: histone H3 |
| 7 | Sobic.004G335600 | 40S ribosomal protein S30, putative, expressed | K02983: RP-S30e, small subunit ribosomal protein S30e |
| 8 | Sobic.001G247300 | "Ca ATPase, IIB type"(PubMedID : 22196357)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calcium-transporting ATPase, plasma membrane-type, putative, expressed | K01537: P-type Ca2+ transporter type 2C |
| 9 | Sobic.005G186100 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@patatin, putative, expressed | - |
| 10 | Sobic.003G364600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed | - |
| 11 | Sobic.009G198600 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein | - |
| 12 | Sobic.003G362700 | cytochrome P450, putative, expressed | - |
| 13 | Sobic.009G247900 | similar to Putative late embryogenesis abundant protein(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@late embryogenesis abundant protein, putative, expressed | - |
| 14 | Sobic.001G318700 | glutathione S-transferase GSTU6, putative, expressed | K00799: GST, glutathione S-transferase |
| 15 | Sobic.003G043600 | BAHD acyl transferase(PubMedID : 28944535)@transferase family protein, putative, expressed | - |
| 16 | Sobic.001G112200 | LTPL118 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
| 17 | Sobic.001G055600 | prenylated rab acceptor, putative, expressed | - |
| 18 | Sobic.007G074000 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@- | - |
| 19 | Sobic.001G481100 | DUF581 domain containing protein, expressed | - |
| 20 | Sobic.004G191400 | - | - |
Gene co-expression network
Octagon: transcription factors
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