Gene annotation
Transcriptome id Sobic.010G057100.1
Synonym Sb10g004940
Functional annotation expressed protein
UniProt -
Pfam PF04758
Panther DB PTHR12650
NCBI CDD KOG0009; Ubiquitin-like/40S ribosomal S30 protein fusion
KEGG Orthology K02983; RP-S30e, small subunit ribosomal protein S30e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT4G29390 : Ribosomal protein S30 family protein
RAP-DB (Rice) LOC_Os06g07580.2 : expressed protein
MaizeGDB (Corn) -
Brachypodium KQK19402 , KQK01212
Barley HORVU7Hr1G027760.2 , HORVU7Hr1G027760.1
Wheat TraesCS6B02G410000 , TraesCS6D02G356300 , TraesCS7D02G132800 , TraesCS6A02G372200 , TraesCS7B02G034200
Populus -


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cDNA sequences
Sobic.010G057100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G099500 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
2 Sobic.009G015000 expressed protein -
3 Sobic.004G335600 40S ribosomal protein S30, putative, expressed K02983: RP-S30e, small subunit ribosomal protein S30e
4 Sobic.003G057366 - K11254: histone H4
5 Sobic.003G322532 - K02975: RP-S25e, small subunit ribosomal protein S25e
6 Sobic.004G128000 expressed protein -
7 Sobic.009G177700 ribosomal protein L24, putative, expressed K02896: RP-L24e, large subunit ribosomal protein L24e
8 Sobic.007G045700 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
9 Sobic.001G313200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
10 Sobic.002G318501 - -
11 Sobic.002G253000 no apical meristem protein, putative, expressed -
12 Sobic.005G139075 - -
13 Sobic.008G172100 ribosomal protein, putative, expressed K02874: RP-L14, MRPL14, large subunit ribosomal protein L14
14 Sobic.001G425300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.002G314700 receptor-like protein kinase, putative, expressed -
16 Sobic.004G271400 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
17 Sobic.003G338966 - -
18 Sobic.002G291066 - K11254: histone H4
19 Sobic.006G186700 histone H1-3(PubMedID : 26465154)@histone H1, putative, expressed K11275: histone H1/5
20 Sobic.002G276000 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A


Gene co-expression network
sample Sobic010G057100 Sobic010G057100 Sobic004G099500 Sobic004G099500 Sobic010G057100--Sobic004G099500 Sobic009G015000 Sobic009G015000 Sobic010G057100--Sobic009G015000 Sobic004G335600 Sobic004G335600 Sobic010G057100--Sobic004G335600 Sobic003G057366 Sobic003G057366 Sobic010G057100--Sobic003G057366 Sobic003G322532 Sobic003G322532 Sobic010G057100--Sobic003G322532 Sobic004G128000 Sobic004G128000 Sobic010G057100--Sobic004G128000 Sobic009G177700 Sobic009G177700 Sobic010G057100--Sobic009G177700 Sobic007G045700 Sobic007G045700 Sobic010G057100--Sobic007G045700 Sobic001G313200 Sobic001G313200 Sobic010G057100--Sobic001G313200 Sobic004G099500--Sobic010G057100 Sobic004G099500--Sobic004G335600 Sobic004G099500--Sobic009G015000 Sobic003G338966 Sobic003G338966 Sobic004G099500--Sobic003G338966 Sobic008G172100 Sobic008G172100 Sobic004G099500--Sobic008G172100 Sobic004G099500--Sobic007G045700 Sobic004G099500--Sobic003G057366 Sobic004G271400 Sobic004G271400 Sobic004G099500--Sobic004G271400 Sobic004G099500--Sobic003G322532 Sobic009G015000--Sobic010G057100 Sobic009G015000--Sobic004G099500 Sobic009G015000--Sobic004G128000 Sobic007G172300 Sobic007G172300 Sobic009G015000--Sobic007G172300 Sobic009G015000--Sobic004G335600 Sobic009G015000--Sobic003G322532 Sobic002G253000 Sobic002G253000 Sobic009G015000--Sobic002G253000 Sobic009G015000--Sobic003G057366 Sobic003G395500 Sobic003G395500 Sobic009G015000--Sobic003G395500 Sobic004G335600--Sobic004G271400 Sobic002G414700 Sobic002G414700 Sobic004G335600--Sobic002G414700 Sobic004G335600--Sobic009G177700 Sobic003G152600 Sobic003G152600 Sobic004G335600--Sobic003G152600 Sobic004G335600--Sobic004G099500 Sobic009G105600 Sobic009G105600 Sobic004G335600--Sobic009G105600 Sobic004G335600--Sobic010G057100 Sobic004G335600--Sobic008G172100 Sobic004G335600--Sobic007G045700 Sobic009G167500 Sobic009G167500 Sobic003G057366--Sobic009G167500 Sobic003G057366--Sobic010G057100 Sobic003G057366--Sobic004G099500 Sobic001G416900 Sobic001G416900 Sobic003G057366--Sobic001G416900 Sobic003G057366--Sobic009G015000 Sobic001G416800 Sobic001G416800 Sobic003G057366--Sobic001G416800 Sobic003G057366--Sobic007G172300 Sobic002G050400 Sobic002G050400 Sobic003G057366--Sobic002G050400 Sobic001G009700 Sobic001G009700 Sobic003G057366--Sobic001G009700 Sobic003G322532--Sobic002G414700 Sobic001G295200 Sobic001G295200 Sobic003G322532--Sobic001G295200 Sobic007G211700 Sobic007G211700 Sobic003G322532--Sobic007G211700 Sobic005G107900 Sobic005G107900 Sobic003G322532--Sobic005G107900 Sobic001G367600 Sobic001G367600 Sobic003G322532--Sobic001G367600 Sobic003G322532--Sobic003G152600 Sobic003G043600 Sobic003G043600 Sobic003G322532--Sobic003G043600 Sobic009G111000 Sobic009G111000 Sobic003G322532--Sobic009G111000 Sobic001G493001 Sobic001G493001 Sobic003G322532--Sobic001G493001 Sobic004G128000--Sobic009G015000 Sobic004G128000--Sobic010G057100 Sobic004G128000--Sobic004G099500 Sobic004G128000--Sobic007G172300 Sobic009G206700 Sobic009G206700 Sobic004G128000--Sobic009G206700 Sobic004G128000--Sobic007G045700 Sobic004G128000--Sobic002G253000 Sobic004G128000--Sobic003G338966 Sobic004G128000--Sobic009G177700 Sobic009G177700--Sobic007G045700 Sobic009G177700--Sobic004G335600 Sobic009G177700--Sobic004G271400 Sobic005G195301 Sobic005G195301 Sobic009G177700--Sobic005G195301 Sobic009G177700--Sobic003G152600 Sobic003G322400 Sobic003G322400 Sobic009G177700--Sobic003G322400 Sobic009G177700--Sobic009G105600 Sobic006G147000 Sobic006G147000 Sobic009G177700--Sobic006G147000 Sobic003G408100 Sobic003G408100 Sobic009G177700--Sobic003G408100 Sobic007G045700--Sobic009G177700 Sobic007G045700--Sobic004G271400 Sobic007G045700--Sobic003G322400 Sobic007G045700--Sobic005G195301 Sobic007G045700--Sobic003G152600 Sobic009G163800 Sobic009G163800 Sobic007G045700--Sobic009G163800 Sobic006G260400 Sobic006G260400 Sobic007G045700--Sobic006G260400 Sobic004G331400 Sobic004G331400 Sobic007G045700--Sobic004G331400 Sobic009G050300 Sobic009G050300 Sobic007G045700--Sobic009G050300 Sobic001G529400 Sobic001G529400 Sobic001G313200--Sobic001G529400 Sobic010G047100 Sobic010G047100 Sobic001G313200--Sobic010G047100 Sobic004G203700 Sobic004G203700 Sobic001G313200--Sobic004G203700 Sobic004G041900 Sobic004G041900 Sobic001G313200--Sobic004G041900 Sobic009G145500 Sobic009G145500 Sobic001G313200--Sobic009G145500 Sobic003G125650 Sobic003G125650 Sobic001G313200--Sobic003G125650 Sobic003G078200 Sobic003G078200 Sobic001G313200--Sobic003G078200 Sobic001G313200--Sobic004G271400 Sobic006G191800 Sobic006G191800 Sobic001G313200--Sobic006G191800
Octagon: transcription factors


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