Gene annotation
Transcriptome id Sobic.002G276000.1
Synonym Sb02g030950, HTA12
Functional annotation Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
UniProt C5X685
Pfam PF00125 PF16211
Panther DB PTHR23430
NCBI CDD KOG1756; Histone 2A
KEGG Orthology K11251; histone H2A
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT5G02560 : histone H2A 12
RAP-DB (Rice) LOC_Os05g02300.1 : Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a045260 , Zm00025a047800 , Zm00025a028432 , Zm00025a052735 , Zm00025a054387 , Zm00025a014436 , Zm00025a007941 , Zm00025a016321
Brachypodium KQK11794 , KQK07730 , KQK05873 , KQK13476 , KQJ89933
Barley HORVU1Hr1G071950.1 , HORVU3Hr1G099160.1 , HORVU5Hr1G109460.1 , HORVU3Hr1G116550.2 , HORVU3Hr1G116550.1 , HORVU5Hr1G109460.2 , HORVU3Hr1G116550.6 , HORVU3Hr1G116550.5 , HORVU3Hr1G116550.4 , HORVU4Hr1G058940.8 , HORVU4Hr1G058940.2 , HORVU4Hr1G058940.3 , HORVU4Hr1G058940.1 , HORVU4Hr1G058940.6 , HORVU4Hr1G058940.7 , HORVU4Hr1G058940.4 , HORVU4Hr1G058940.5 , HORVU7Hr1G100100.3 , HORVU7Hr1G100100.2 , HORVU7Hr1G100100.1 , HORVU7Hr1G030120.1 , HORVU7Hr1G030120.2 , HORVU0Hr1G013190.1 , HORVU0Hr1G013190.2 , HORVU5Hr1G069680.1 , HORVU1Hr1G005870.1 , HORVU1Hr1G005870.3 , HORVU6Hr1G011620.2 , HORVU6Hr1G011620.3 , HORVU6Hr1G011620.1 , HORVU6Hr1G011620.4 , HORVU4Hr1G058810.1 , HORVU5Hr1G069690.2 , HORVU5Hr1G069690.1 , HORVU5Hr1G105090.1 , HORVU5Hr1G105090.2 , HORVU5Hr1G105090.3 , HORVU5Hr1G105090.4 , HORVU5Hr1G105090.5 , HORVU5Hr1G105090.6 , HORVU6Hr1G011490.2 , HORVU1Hr1G071960.4 , HORVU6Hr1G011490.4 , HORVU6Hr1G011490.1 , HORVU1Hr1G071960.1 , HORVU1Hr1G071960.2 , HORVU1Hr1G071960.3 , HORVU4Hr1G008800.1 , HORVU5Hr1G082190.1 , HORVU7Hr1G100120.3 , HORVU7Hr1G100120.2 , HORVU7Hr1G100120.5 , HORVU7Hr1G100120.4 , HORVU7Hr1G100120.7 , HORVU7Hr1G100120.6 , HORVU7Hr1G100120.9 , HORVU7Hr1G100120.8 , HORVU7Hr1G100120.14 , HORVU7Hr1G100120.11 , HORVU7Hr1G100120.10 , HORVU7Hr1G100120.13 , HORVU7Hr1G100120.12 , HORVU6Hr1G009020.1
Wheat TraesCS6B02G049000 , TraesCS5B02G452400 , TraesCS1A02G038200 , TraesCS2D02G220400 , TraesCS7B02G050300 , TraesCS6B02G082100 , TraesCS6D02G062300 , TraesCS6D02G062800 , TraesCS1B02G296300 , TraesCS6A02G062600 , TraesCS3D02G539300 , TraesCS4D02G053100 , TraesCS1A02G038100 , TraesCS1A02G286900 , TraesCS6B02G082300 , TraesCS1D02G285800 , TraesCS5B02G473100 , TraesCS3A02G534100 , TraesCS2A02G214600 , TraesCS6B02G048300 , TraesCS1D02G039900 , TraesCS5D02G474800 , TraesCS1B02G048900 , TraesCS2B02G239600 , TraesCS4B02G052900 , TraesCS6A02G061700 , TraesCS1D02G039800 , TraesCS3B02G610800 , TraesCS6D02G039900 , TraesCS6B02G100100 , TraesCS6B02G049400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G057100 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
2 Sobic.001G054800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AT hook-containing DNA-binding protein, putative, expressed K11275: histone H1/5
3 Sobic.003G347900 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
4 Sobic.001G529400 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
5 Sobic.001G009700 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
6 Sobic.002G291066 - K11254: histone H4
7 Sobic.007G198000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AIR12, putative, expressed -
8 Sobic.010G047200 histone H3, putative, expressed K11253: histone H3
9 Sobic.009G015900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
10 Sobic.010G047100 histone H3, putative, expressed K11253: histone H3
11 Sobic.001G313200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
12 Sobic.009G167500 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
13 Sobic.010G057100 expressed protein K02983: RP-S30e, small subunit ribosomal protein S30e
14 Sobic.003G057366 - K11254: histone H4
15 Sobic.006G191800 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
16 Sobic.003G338966 - -
17 Sobic.004G099500 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
18 Sobic.006G057200 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
19 Sobic.001G205000 ATEB1A-like microtubule associated protein, putative, expressed K10436: microtubule-associated protein, RP/EB family
20 Sobic.002G318501 - -


Gene co-expression network
sample Sobic002G276000 Sobic002G276000 Sobic003G057100 Sobic003G057100 Sobic002G276000--Sobic003G057100 Sobic001G054800 Sobic001G054800 Sobic002G276000--Sobic001G054800 Sobic003G347900 Sobic003G347900 Sobic002G276000--Sobic003G347900 Sobic001G529400 Sobic001G529400 Sobic002G276000--Sobic001G529400 Sobic001G009700 Sobic001G009700 Sobic002G276000--Sobic001G009700 Sobic002G291066 Sobic002G291066 Sobic002G276000--Sobic002G291066 Sobic007G198000 Sobic007G198000 Sobic002G276000--Sobic007G198000 Sobic010G047200 Sobic010G047200 Sobic002G276000--Sobic010G047200 Sobic009G015900 Sobic009G015900 Sobic002G276000--Sobic009G015900 Sobic003G057100--Sobic002G276000 Sobic003G057100--Sobic001G054800 Sobic003G057100--Sobic001G529400 Sobic003G057100--Sobic003G347900 Sobic003G057100--Sobic002G291066 Sobic010G047100 Sobic010G047100 Sobic003G057100--Sobic010G047100 Sobic003G057100--Sobic001G009700 Sobic006G191800 Sobic006G191800 Sobic003G057100--Sobic006G191800 Sobic004G170500 Sobic004G170500 Sobic003G057100--Sobic004G170500 Sobic001G054800--Sobic002G276000 Sobic001G054800--Sobic003G057100 Sobic001G054800--Sobic002G291066 Sobic001G054800--Sobic007G198000 Sobic001G054800--Sobic001G009700 Sobic001G054800--Sobic001G529400 Sobic001G054800--Sobic003G347900 Sobic009G167500 Sobic009G167500 Sobic001G054800--Sobic009G167500 Sobic001G054800--Sobic010G047100 Sobic006G057200 Sobic006G057200 Sobic003G347900--Sobic006G057200 Sobic003G347900--Sobic007G198000 Sobic001G313200 Sobic001G313200 Sobic003G347900--Sobic001G313200 Sobic003G347900--Sobic001G529400 Sobic003G347900--Sobic006G191800 Sobic003G347900--Sobic002G276000 Sobic003G347900--Sobic010G047100 Sobic003G078200 Sobic003G078200 Sobic003G347900--Sobic003G078200 Sobic003G347900--Sobic003G057100 Sobic001G529400--Sobic001G313200 Sobic001G529400--Sobic010G047100 Sobic001G529400--Sobic006G191800 Sobic001G529400--Sobic009G015900 Sobic001G529400--Sobic003G347900 Sobic010G221300 Sobic010G221300 Sobic001G529400--Sobic010G221300 Sobic001G529400--Sobic003G078200 Sobic006G137800 Sobic006G137800 Sobic001G529400--Sobic006G137800 Sobic001G529400--Sobic003G057100 Sobic001G009700--Sobic009G167500 Sobic001G009700--Sobic002G276000 Sobic001G009700--Sobic001G054800 Sobic001G009700--Sobic003G057100 Sobic002G210500 Sobic002G210500 Sobic001G009700--Sobic002G210500 Sobic003G057366 Sobic003G057366 Sobic001G009700--Sobic003G057366 Sobic010G013100 Sobic010G013100 Sobic001G009700--Sobic010G013100 Sobic004G099500 Sobic004G099500 Sobic001G009700--Sobic004G099500 Sobic003G338966 Sobic003G338966 Sobic001G009700--Sobic003G338966 Sobic002G291066--Sobic001G054800 Sobic002G291066--Sobic001G529400 Sobic002G291066--Sobic003G057100 Sobic006G186700 Sobic006G186700 Sobic002G291066--Sobic006G186700 Sobic002G291066--Sobic002G276000 Sobic002G291066--Sobic001G313200 Sobic002G291066--Sobic007G198000 Sobic002G291066--Sobic010G047100 Sobic010G057100 Sobic010G057100 Sobic002G291066--Sobic010G057100 Sobic007G198000--Sobic003G347900 Sobic007G198000--Sobic006G057200 Sobic007G198000--Sobic001G529400 Sobic010G070500 Sobic010G070500 Sobic007G198000--Sobic010G070500 Sobic003G160700 Sobic003G160700 Sobic007G198000--Sobic003G160700 Sobic007G198000--Sobic010G047100 Sobic001G475500 Sobic001G475500 Sobic007G198000--Sobic001G475500 Sobic003G027400 Sobic003G027400 Sobic007G198000--Sobic003G027400 Sobic003G379600 Sobic003G379600 Sobic007G198000--Sobic003G379600 Sobic010G047200--Sobic002G276000 Sobic010G047200--Sobic003G057100 Sobic010G047200--Sobic009G015900 Sobic010G047200--Sobic009G167500 Sobic010G047200--Sobic003G057366 Sobic006G076400 Sobic006G076400 Sobic010G047200--Sobic006G076400 Sobic010G047200--Sobic001G054800 Sobic010G047200--Sobic001G009700 Sobic010G047200--Sobic001G529400 Sobic009G015900--Sobic001G529400 Sobic009G015900--Sobic006G191800 Sobic002G422300 Sobic002G422300 Sobic009G015900--Sobic002G422300 Sobic009G015900--Sobic001G313200 Sobic009G015900--Sobic010G047100 Sobic009G015900--Sobic002G276000 Sobic001G188800 Sobic001G188800 Sobic009G015900--Sobic001G188800 Sobic009G015900--Sobic003G347900 Sobic009G015900--Sobic003G057100
Octagon: transcription factors


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