Gene annotation
Transcriptome id Sobic.009G015900.1
Synonym Sb09g001520, HTA12
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
UniProt C5YYL4
Pfam PF00125 PF16211
Panther DB PTHR23430
NCBI CDD KOG1756; Histone 2A
KEGG Orthology K11251; histone H2A
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT5G02560 : histone H2A 12
RAP-DB (Rice) LOC_Os05g02300.1 : Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a045260 , Zm00025a047800 , Zm00025a054387 , Zm00025a043907 , Zm00025a014436 , Zm00025a007941 , Zm00025a048317 , Zm00025a016321 , Zm00025a040905
Brachypodium KQK22303 , KQK22304 , KQJ86512 , KQK07730 , KQK15863 , KQK13476 , KQJ89933 , KQK11794 , KQK05873
Barley HORVU3Hr1G014560.1 , HORVU1Hr1G071950.1 , HORVU5Hr1G109460.1 , HORVU3Hr1G116550.2 , HORVU3Hr1G116550.1 , HORVU5Hr1G109460.2 , HORVU4Hr1G029280.1 , HORVU3Hr1G116550.5 , HORVU3Hr1G116550.4 , HORVU0Hr1G016940.1 , HORVU0Hr1G016940.2 , HORVU0Hr1G016940.3 , HORVU6Hr1G006120.1 , HORVU4Hr1G058940.8 , HORVU6Hr1G006120.2 , HORVU4Hr1G058940.2 , HORVU4Hr1G058940.3 , HORVU6Hr1G092390.1 , HORVU4Hr1G058940.1 , HORVU4Hr1G058940.6 , HORVU4Hr1G058940.7 , HORVU4Hr1G058940.4 , HORVU4Hr1G058940.5 , HORVU7Hr1G100100.3 , HORVU7Hr1G100100.2 , HORVU7Hr1G100100.1 , HORVU7Hr1G117230.2 , HORVU0Hr1G013190.1 , HORVU0Hr1G013190.2 , HORVU6Hr1G029220.1 , HORVU7Hr1G112470.1 , HORVU6Hr1G029220.3 , HORVU6Hr1G029220.2 , HORVU7Hr1G117230.1 , HORVU6Hr1G003750.1 , HORVU7Hr1G117230.3 , HORVU4Hr1G090910.2 , HORVU5Hr1G069680.1 , HORVU1Hr1G005870.1 , HORVU1Hr1G005870.3 , HORVU1Hr1G005870.2 , HORVU6Hr1G011620.2 , HORVU6Hr1G011620.3 , HORVU6Hr1G011620.1 , HORVU6Hr1G011620.4 , HORVU6Hr1G005960.1 , HORVU6Hr1G005960.2 , HORVU6Hr1G005960.3 , HORVU6Hr1G005960.4 , HORVU6Hr1G005960.5 , HORVU6Hr1G005960.6 , HORVU6Hr1G005960.7 , HORVU6Hr1G005960.8 , HORVU6Hr1G005960.9 , HORVU3Hr1G116550.3 , HORVU6Hr1G006090.1 , HORVU2Hr1G043860.2 , HORVU2Hr1G043860.1 , HORVU5Hr1G090670.1 , HORVU5Hr1G090670.2 , HORVU6Hr1G006080.2 , HORVU6Hr1G006080.1 , HORVU6Hr1G092280.1 , HORVU4Hr1G058810.1 , HORVU2Hr1G110470.3 , HORVU2Hr1G110470.2 , HORVU2Hr1G110470.1 , HORVU6Hr1G092280.2 , HORVU5Hr1G069690.2 , HORVU5Hr1G069690.1 , HORVU5Hr1G105090.1 , HORVU5Hr1G105090.2 , HORVU5Hr1G105090.3 , HORVU5Hr1G105090.4 , HORVU5Hr1G105090.5 , HORVU5Hr1G105090.6 , HORVU1Hr1G071960.3 , HORVU1Hr1G071960.4 , HORVU6Hr1G011490.4 , HORVU6Hr1G011490.1 , HORVU1Hr1G071960.1 , HORVU1Hr1G071960.2 , HORVU6Hr1G011490.2 , HORVU4Hr1G008800.2 , HORVU4Hr1G008800.1 , HORVU7Hr1G100400.2 , HORVU7Hr1G100400.1 , HORVU5Hr1G082190.1 , HORVU6Hr1G006140.2 , HORVU6Hr1G006140.1 , HORVU7Hr1G100120.3 , HORVU7Hr1G100120.2 , HORVU7Hr1G100120.5 , HORVU7Hr1G100120.7 , HORVU7Hr1G100120.6 , HORVU7Hr1G100120.9 , HORVU7Hr1G100120.8 , HORVU7Hr1G100120.14 , HORVU7Hr1G100120.11 , HORVU7Hr1G100120.10 , HORVU7Hr1G100120.13 , HORVU7Hr1G100120.12 , HORVU6Hr1G005960.10 , HORVU6Hr1G006130.6 , HORVU6Hr1G006130.7 , HORVU6Hr1G006130.5 , HORVU6Hr1G009020.1 , HORVU6Hr1G005940.6 , HORVU6Hr1G005940.4 , HORVU6Hr1G005940.5 , HORVU6Hr1G005940.2 , HORVU6Hr1G005940.3 , HORVU6Hr1G005940.1
Wheat TraesCS6B02G049200 , TraesCS6B02G049000 , TraesCS1B02G049100 , TraesCS5B02G452400 , TraesCS6B02G048700 , TraesCS1A02G038200 , TraesCS1A02G286900 , TraesCS3D02G521700 , TraesCS6A02G061700 , TraesCS6D02G062300 , TraesCS6D02G062800 , TraesCS3A02G534300 , TraesCS1B02G296300 , TraesCS6A02G034600 , TraesCS1B02G357400 , TraesCS6A02G062600 , TraesCS3D02G539300 , TraesCS7D02G520000 , TraesCS7B02G449800 , TraesCS6A02G075400 , TraesCS4D02G053100 , TraesCS6A02G034300 , TraesCS1A02G038100 , TraesCS6A02G034900 , TraesCS6B02G082300 , TraesCS1D02G285800 , TraesCS6B02G082500 , TraesCS6B02G049500 , TraesCS6D02G040800 , TraesCS5B02G473100 , TraesCS6A02G034800 , TraesCS3A02G534100 , TraesCS6D02G040700 , TraesCS6B02G048300 , TraesCS1D02G039900 , TraesCS5D02G474800 , TraesCS6D02G039900 , TraesCS6B02G058400 , TraesCS1B02G048900 , TraesCS6A02G035100 , TraesCS6B02G082400 , TraesCS6D02G040400 , TraesCS6A02G035200 , TraesCS6D02G040300 , TraesCS6B02G048600 , TraesCS6D02G040500 , TraesCS4B02G052900 , TraesCS6B02G082100 , TraesCS7B02G408300 , TraesCS1D02G039800 , TraesCS3B02G610800 , TraesCS3D02G539700 , TraesCS7B02G408400 , TraesCS6B02G049400 , TraesCS5A02G462100 , TraesCS6A02G042700
Populus -


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cDNA sequences
Sobic.009G015900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G529400 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
2 Sobic.006G191800 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
3 Sobic.002G422300 ethylene-insensitive 3, putative, expressed K14514: ethylene-insensitive protein 3
4 Sobic.001G313200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
5 Sobic.010G047100 histone H3, putative, expressed K11253: histone H3
6 Sobic.002G276000 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
7 Sobic.001G188800 cysteine-rich repeat secretory protein 55 precursor, putative, expressed -
8 Sobic.003G347900 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
9 Sobic.003G057100 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
10 Sobic.006G008000 O-methyltransferase, putative, expressed -
11 Sobic.001G114900 - -
12 Sobic.010G043900 expressed protein -
13 Sobic.001G189000 peroxidase precursor, putative, expressed K00430: peroxidase
14 Sobic.002G012300 DUF538 domain containing protein, putative, expressed -
15 Sobic.010G047200 histone H3, putative, expressed K11253: histone H3
16 Sobic.010G062300 plant protein of unknown function domain containing protein, expressed -
17 Sobic.003G026400 aquaporin protein, putative, expressed K09874: aquaporin NIP
18 Sobic.010G221300 expressed protein -
19 Sobic.005G086600 O-methyltransferase, putative, expressed -
20 Sobic.001G267600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@thaumatin, putative, expressed -


Gene co-expression network
sample Sobic009G015900 Sobic009G015900 Sobic001G529400 Sobic001G529400 Sobic009G015900--Sobic001G529400 Sobic006G191800 Sobic006G191800 Sobic009G015900--Sobic006G191800 Sobic002G422300 Sobic002G422300 Sobic009G015900--Sobic002G422300 Sobic001G313200 Sobic001G313200 Sobic009G015900--Sobic001G313200 Sobic010G047100 Sobic010G047100 Sobic009G015900--Sobic010G047100 Sobic002G276000 Sobic002G276000 Sobic009G015900--Sobic002G276000 Sobic001G188800 Sobic001G188800 Sobic009G015900--Sobic001G188800 Sobic003G347900 Sobic003G347900 Sobic009G015900--Sobic003G347900 Sobic003G057100 Sobic003G057100 Sobic009G015900--Sobic003G057100 Sobic001G529400--Sobic001G313200 Sobic001G529400--Sobic010G047100 Sobic001G529400--Sobic006G191800 Sobic001G529400--Sobic009G015900 Sobic001G529400--Sobic003G347900 Sobic010G221300 Sobic010G221300 Sobic001G529400--Sobic010G221300 Sobic003G078200 Sobic003G078200 Sobic001G529400--Sobic003G078200 Sobic006G137800 Sobic006G137800 Sobic001G529400--Sobic006G137800 Sobic001G529400--Sobic003G057100 Sobic006G191800--Sobic010G221300 Sobic006G191800--Sobic001G529400 Sobic006G191800--Sobic010G047100 Sobic001G361600 Sobic001G361600 Sobic006G191800--Sobic001G361600 Sobic003G125650 Sobic003G125650 Sobic006G191800--Sobic003G125650 Sobic006G191800--Sobic001G313200 Sobic002G389400 Sobic002G389400 Sobic006G191800--Sobic002G389400 Sobic001G295200 Sobic001G295200 Sobic006G191800--Sobic001G295200 Sobic003G160700 Sobic003G160700 Sobic006G191800--Sobic003G160700 Sobic010G043900 Sobic010G043900 Sobic002G422300--Sobic010G043900 Sobic008G158332 Sobic008G158332 Sobic002G422300--Sobic008G158332 Sobic002G010900 Sobic002G010900 Sobic002G422300--Sobic002G010900 Sobic001G114900 Sobic001G114900 Sobic002G422300--Sobic001G114900 Sobic006G268500 Sobic006G268500 Sobic002G422300--Sobic006G268500 Sobic009G071000 Sobic009G071000 Sobic002G422300--Sobic009G071000 Sobic008G027600 Sobic008G027600 Sobic002G422300--Sobic008G027600 Sobic006G101300 Sobic006G101300 Sobic002G422300--Sobic006G101300 Sobic003G026400 Sobic003G026400 Sobic002G422300--Sobic003G026400 Sobic001G313200--Sobic001G529400 Sobic001G313200--Sobic010G047100 Sobic004G203700 Sobic004G203700 Sobic001G313200--Sobic004G203700 Sobic004G041900 Sobic004G041900 Sobic001G313200--Sobic004G041900 Sobic009G145500 Sobic009G145500 Sobic001G313200--Sobic009G145500 Sobic001G313200--Sobic003G125650 Sobic001G313200--Sobic003G078200 Sobic004G271400 Sobic004G271400 Sobic001G313200--Sobic004G271400 Sobic001G313200--Sobic006G191800 Sobic010G047100--Sobic001G313200 Sobic010G047100--Sobic001G529400 Sobic010G047100--Sobic004G041900 Sobic010G047100--Sobic006G191800 Sobic010G047100--Sobic010G221300 Sobic001G031700 Sobic001G031700 Sobic010G047100--Sobic001G031700 Sobic010G047100--Sobic003G160700 Sobic003G322532 Sobic003G322532 Sobic010G047100--Sobic003G322532 Sobic010G047100--Sobic003G125650 Sobic002G276000--Sobic003G057100 Sobic001G054800 Sobic001G054800 Sobic002G276000--Sobic001G054800 Sobic002G276000--Sobic003G347900 Sobic002G276000--Sobic001G529400 Sobic001G009700 Sobic001G009700 Sobic002G276000--Sobic001G009700 Sobic002G291066 Sobic002G291066 Sobic002G276000--Sobic002G291066 Sobic007G198000 Sobic007G198000 Sobic002G276000--Sobic007G198000 Sobic010G047200 Sobic010G047200 Sobic002G276000--Sobic010G047200 Sobic002G276000--Sobic009G015900 Sobic006G008000 Sobic006G008000 Sobic001G188800--Sobic006G008000 Sobic008G066200 Sobic008G066200 Sobic001G188800--Sobic008G066200 Sobic005G086600 Sobic005G086600 Sobic001G188800--Sobic005G086600 Sobic003G079200 Sobic003G079200 Sobic001G188800--Sobic003G079200 Sobic002G012300 Sobic002G012300 Sobic001G188800--Sobic002G012300 Sobic008G022000 Sobic008G022000 Sobic001G188800--Sobic008G022000 Sobic004G161751 Sobic004G161751 Sobic001G188800--Sobic004G161751 Sobic002G012500 Sobic002G012500 Sobic001G188800--Sobic002G012500 Sobic001G188800--Sobic001G114900 Sobic006G057200 Sobic006G057200 Sobic003G347900--Sobic006G057200 Sobic003G347900--Sobic007G198000 Sobic003G347900--Sobic001G313200 Sobic003G347900--Sobic001G529400 Sobic003G347900--Sobic006G191800 Sobic003G347900--Sobic002G276000 Sobic003G347900--Sobic010G047100 Sobic003G347900--Sobic003G078200 Sobic003G347900--Sobic003G057100 Sobic003G057100--Sobic002G276000 Sobic003G057100--Sobic001G054800 Sobic003G057100--Sobic001G529400 Sobic003G057100--Sobic003G347900 Sobic003G057100--Sobic002G291066 Sobic003G057100--Sobic010G047100 Sobic003G057100--Sobic001G009700 Sobic003G057100--Sobic006G191800 Sobic004G170500 Sobic004G170500 Sobic003G057100--Sobic004G170500
Octagon: transcription factors


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