Gene annotation
Transcriptome id Sobic.001G416900.1
Synonym HTA12, Sb01g039250
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
UniProt C5WPC4
Pfam PF00125 PF16211
Panther DB PTHR23430
NCBI CDD KOG1756; Histone 2A
KEGG Orthology K11251; histone H2A
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT5G02560 : histone H2A 12
RAP-DB (Rice) LOC_Os05g02300.1 : Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a045260 , Zm00025a028432 , Zm00025a052735 , Zm00025a014436 , Zm00025a007941 , Zm00025a048317 , Zm00025a016321
Brachypodium KQK11794 , KQK07730 , KQK05873 , KQK15863 , KQK22303 , KQJ89933
Barley HORVU3Hr1G014560.1 , HORVU1Hr1G071950.1 , HORVU3Hr1G099160.1 , HORVU5Hr1G109460.1 , HORVU3Hr1G116550.2 , HORVU3Hr1G116550.1 , HORVU5Hr1G109460.2 , HORVU4Hr1G029280.1 , HORVU3Hr1G116550.5 , HORVU3Hr1G116550.4 , HORVU6Hr1G006120.1 , HORVU4Hr1G058940.8 , HORVU6Hr1G006120.2 , HORVU4Hr1G058940.2 , HORVU4Hr1G058940.3 , HORVU4Hr1G058940.1 , HORVU4Hr1G058940.6 , HORVU4Hr1G058940.7 , HORVU4Hr1G058940.4 , HORVU4Hr1G058940.5 , HORVU4Hr1G070250.1 , HORVU4Hr1G070250.2 , HORVU4Hr1G070250.3 , HORVU4Hr1G070250.4 , HORVU4Hr1G070250.5 , HORVU7Hr1G100100.3 , HORVU7Hr1G100100.2 , HORVU7Hr1G100100.1 , HORVU7Hr1G117230.2 , HORVU7Hr1G030120.1 , HORVU7Hr1G030120.2 , HORVU0Hr1G013190.1 , HORVU0Hr1G013190.2 , HORVU5Hr1G026650.6 , HORVU5Hr1G026650.7 , HORVU5Hr1G026650.4 , HORVU5Hr1G026650.5 , HORVU5Hr1G026650.2 , HORVU5Hr1G026650.3 , HORVU5Hr1G026650.1 , HORVU6Hr1G029220.1 , HORVU7Hr1G112470.1 , HORVU6Hr1G029220.3 , HORVU6Hr1G029220.2 , HORVU7Hr1G117230.1 , HORVU6Hr1G003750.1 , HORVU7Hr1G117230.3 , HORVU6Hr1G003750.2 , HORVU4Hr1G090910.2 , HORVU5Hr1G069680.1 , HORVU1Hr1G005870.1 , HORVU1Hr1G005870.3 , HORVU1Hr1G005870.2 , HORVU6Hr1G011620.2 , HORVU6Hr1G011620.3 , HORVU6Hr1G011620.1 , HORVU6Hr1G011620.4 , HORVU6Hr1G005960.1 , HORVU6Hr1G005960.2 , HORVU6Hr1G005960.3 , HORVU6Hr1G005960.4 , HORVU6Hr1G005960.5 , HORVU6Hr1G005960.6 , HORVU6Hr1G005960.7 , HORVU6Hr1G005960.8 , HORVU6Hr1G005960.9 , HORVU5Hr1G110680.1 , HORVU3Hr1G116550.3 , HORVU6Hr1G006090.1 , HORVU2Hr1G043860.2 , HORVU2Hr1G043860.1 , HORVU6Hr1G006080.2 , HORVU6Hr1G006080.1 , HORVU4Hr1G058810.1 , HORVU2Hr1G110470.3 , HORVU2Hr1G110470.2 , HORVU2Hr1G110470.1 , HORVU5Hr1G069690.2 , HORVU5Hr1G069690.1 , HORVU5Hr1G105090.1 , HORVU5Hr1G105090.3 , HORVU5Hr1G105090.4 , HORVU5Hr1G105090.5 , HORVU5Hr1G105090.6 , HORVU1Hr1G071960.3 , HORVU1Hr1G071960.4 , HORVU6Hr1G011490.4 , HORVU6Hr1G011490.1 , HORVU1Hr1G071960.1 , HORVU1Hr1G071960.2 , HORVU6Hr1G011490.2 , HORVU2Hr1G043840.1 , HORVU7Hr1G100400.2 , HORVU7Hr1G100400.1 , HORVU6Hr1G006140.2 , HORVU6Hr1G006140.1 , HORVU7Hr1G100120.3 , HORVU7Hr1G100120.2 , HORVU7Hr1G100120.5 , HORVU7Hr1G100120.4 , HORVU7Hr1G100120.7 , HORVU7Hr1G100120.6 , HORVU7Hr1G100120.9 , HORVU7Hr1G100120.8 , HORVU7Hr1G100120.14 , HORVU7Hr1G100120.11 , HORVU7Hr1G100120.10 , HORVU7Hr1G100120.13 , HORVU7Hr1G100120.12 , HORVU6Hr1G005960.10 , HORVU6Hr1G006130.6 , HORVU6Hr1G006130.7 , HORVU6Hr1G006130.5 , HORVU6Hr1G009020.1 , HORVU6Hr1G005940.6 , HORVU6Hr1G005940.5 , HORVU6Hr1G005940.2 , HORVU6Hr1G005940.3 , HORVU6Hr1G005940.1
Wheat TraesCS6B02G049200 , TraesCS6B02G049000 , TraesCS1B02G049100 , TraesCS6B02G048700 , TraesCS1A02G038200 , TraesCS5A02G098300 , TraesCS1A02G286900 , TraesCS3D02G521700 , TraesCS6B02G082100 , TraesCS6D02G062300 , TraesCS6D02G062800 , TraesCS3A02G534300 , TraesCS1B02G296300 , TraesCS6A02G034600 , TraesCS1B02G357400 , TraesCS6A02G062600 , TraesCS6D02G040700 , TraesCS3D02G539300 , TraesCS7D02G520000 , TraesCS5B02G103600 , TraesCS7B02G449800 , TraesCS6A02G075400 , TraesCS4D02G053100 , TraesCS6A02G034300 , TraesCS1A02G038100 , TraesCS6A02G034900 , TraesCS7B02G050300 , TraesCS6B02G082300 , TraesCS1D02G285800 , TraesCS6B02G082500 , TraesCS6B02G049500 , TraesCS6D02G040800 , TraesCS5B02G473100 , TraesCS6A02G034800 , TraesCS5D02G110600 , TraesCS3A02G534100 , TraesCS6B02G048300 , TraesCS1D02G039900 , TraesCS5D02G474800 , TraesCS6D02G039900 , TraesCS6B02G058400 , TraesCS1B02G048900 , TraesCS6A02G035100 , TraesCS6B02G082400 , TraesCS6D02G040400 , TraesCS6A02G035200 , TraesCS6D02G040300 , TraesCS6B02G048600 , TraesCS6D02G040500 , TraesCS4B02G052900 , TraesCS6A02G061700 , TraesCS7B02G408300 , TraesCS1D02G039800 , TraesCS3B02G610800 , TraesCS3D02G539700 , TraesCS7B02G408400 , TraesCS6B02G100100 , TraesCS6B02G049400 , TraesCS5A02G462100 , TraesCS6A02G042700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G416800 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
2 Sobic.003G127600 ubiquitin-conjugating enzyme, putative, expressed K06688: UBE2C, ubiquitin-conjugating enzyme E2 C
3 Sobic.001G417000 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
4 Sobic.002G059200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
5 Sobic.009G123000 expressed protein -
6 Sobic.002G209300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
7 Sobic.002G403400 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
8 Sobic.002G056300 AT hook-containing DNA-binding protein, putative, expressed K11275: histone H1/5
9 Sobic.003G300701 - -
10 Sobic.004G259700 60S ribosomal protein L31, putative, expressed K02910: RP-L31e, large subunit ribosomal protein L31e
11 Sobic.010G013100 expressed protein -
12 Sobic.009G167500 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
13 Sobic.001G158000 selT/selW/selH selenoprotein domain containing protein, expressed -
14 Sobic.003G057366 - K11254: histone H4
15 Sobic.004G265400 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
16 Sobic.010G099400 metalloendoproteinase 1 precursor, putative, expressed -
17 Sobic.001G193400 DUF538 domain containing protein, putative, expressed -
18 Sobic.003G350100 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
19 Sobic.007G149600 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
20 Sobic.003G286100 mitochondrial import receptor subunit TOM7-1, putative, expressed K17771: mitochondrial import receptor subunit TOM7


Gene co-expression network
sample Sobic001G416900 Sobic001G416900 Sobic001G416800 Sobic001G416800 Sobic001G416900--Sobic001G416800 Sobic003G127600 Sobic003G127600 Sobic001G416900--Sobic003G127600 Sobic001G417000 Sobic001G417000 Sobic001G416900--Sobic001G417000 Sobic002G059200 Sobic002G059200 Sobic001G416900--Sobic002G059200 Sobic009G123000 Sobic009G123000 Sobic001G416900--Sobic009G123000 Sobic002G209300 Sobic002G209300 Sobic001G416900--Sobic002G209300 Sobic002G403400 Sobic002G403400 Sobic001G416900--Sobic002G403400 Sobic002G056300 Sobic002G056300 Sobic001G416900--Sobic002G056300 Sobic003G300701 Sobic003G300701 Sobic001G416900--Sobic003G300701 Sobic001G416800--Sobic003G127600 Sobic001G416800--Sobic001G416900 Sobic001G416800--Sobic002G056300 Sobic001G416800--Sobic002G059200 Sobic001G416800--Sobic002G403400 Sobic001G416800--Sobic009G123000 Sobic003G350100 Sobic003G350100 Sobic001G416800--Sobic003G350100 Sobic008G061000 Sobic008G061000 Sobic001G416800--Sobic008G061000 Sobic004G227000 Sobic004G227000 Sobic001G416800--Sobic004G227000 Sobic003G127600--Sobic001G416800 Sobic003G127600--Sobic009G123000 Sobic003G127600--Sobic001G416900 Sobic003G127600--Sobic002G056300 Sobic003G127600--Sobic002G059200 Sobic003G127600--Sobic004G227000 Sobic003G127600--Sobic008G061000 Sobic004G128600 Sobic004G128600 Sobic003G127600--Sobic004G128600 Sobic003G127600--Sobic002G403400 Sobic001G417000--Sobic003G300701 Sobic001G417000--Sobic001G416900 Sobic001G417000--Sobic001G416800 Sobic001G417000--Sobic002G059200 Sobic010G013100 Sobic010G013100 Sobic001G417000--Sobic010G013100 Sobic001G417000--Sobic002G403400 Sobic001G417000--Sobic002G056300 Sobic001G158000 Sobic001G158000 Sobic001G417000--Sobic001G158000 Sobic001G417000--Sobic003G127600 Sobic002G059200--Sobic002G403400 Sobic002G059200--Sobic003G350100 Sobic004G265400 Sobic004G265400 Sobic002G059200--Sobic004G265400 Sobic007G149600 Sobic007G149600 Sobic002G059200--Sobic007G149600 Sobic001G193400 Sobic001G193400 Sobic002G059200--Sobic001G193400 Sobic003G067300 Sobic003G067300 Sobic002G059200--Sobic003G067300 Sobic002G059200--Sobic002G056300 Sobic007G221800 Sobic007G221800 Sobic002G059200--Sobic007G221800 Sobic003G067500 Sobic003G067500 Sobic002G059200--Sobic003G067500 Sobic009G123000--Sobic003G127600 Sobic009G123000--Sobic001G416800 Sobic005G198300 Sobic005G198300 Sobic009G123000--Sobic005G198300 Sobic006G003000 Sobic006G003000 Sobic009G123000--Sobic006G003000 Sobic009G123000--Sobic001G416900 Sobic001G148600 Sobic001G148600 Sobic009G123000--Sobic001G148600 Sobic009G123000--Sobic008G061000 Sobic009G155500 Sobic009G155500 Sobic009G123000--Sobic009G155500 Sobic010G161300 Sobic010G161300 Sobic009G123000--Sobic010G161300 Sobic002G209300--Sobic001G158000 Sobic002G209300--Sobic002G403400 Sobic002G209300--Sobic001G193400 Sobic002G209300--Sobic002G059200 Sobic002G209300--Sobic004G265400 Sobic002G209300--Sobic003G350100 Sobic002G209300--Sobic007G221800 Sobic004G230900 Sobic004G230900 Sobic002G209300--Sobic004G230900 Sobic002G209300--Sobic007G149600 Sobic002G403400--Sobic003G350100 Sobic002G403400--Sobic002G059200 Sobic002G403400--Sobic004G265400 Sobic002G403400--Sobic003G067300 Sobic002G403400--Sobic007G149600 Sobic002G403400--Sobic001G193400 Sobic002G403400--Sobic003G067500 Sobic002G403400--Sobic007G221800 Sobic003G200501 Sobic003G200501 Sobic002G403400--Sobic003G200501 Sobic002G056300--Sobic002G059200 Sobic002G056300--Sobic002G403400 Sobic002G056300--Sobic003G350100 Sobic002G056300--Sobic003G067300 Sobic002G056300--Sobic004G265400 Sobic002G056300--Sobic001G416800 Sobic008G133100 Sobic008G133100 Sobic002G056300--Sobic008G133100 Sobic002G056300--Sobic007G149600 Sobic001G200500 Sobic001G200500 Sobic002G056300--Sobic001G200500 Sobic003G300701--Sobic001G417000 Sobic003G300701--Sobic010G013100 Sobic003G300701--Sobic001G416900 Sobic003G301200 Sobic003G301200 Sobic003G300701--Sobic003G301200 Sobic007G081300 Sobic007G081300 Sobic003G300701--Sobic007G081300 Sobic003G300701--Sobic001G158000 Sobic003G300701--Sobic002G059200 Sobic003G300701--Sobic004G265400 Sobic003G235800 Sobic003G235800 Sobic003G300701--Sobic003G235800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.