Gene annotation
Transcriptome id Sobic.002G059200.1
Synonym Sb02g004970, HTA12
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
UniProt C5XBR4
Pfam PF00125 PF16211
Panther DB PTHR23430
NCBI CDD KOG1756; Histone 2A
KEGG Orthology K11251; histone H2A
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT5G02560 : histone H2A 12
RAP-DB (Rice) LOC_Os05g02300.1 : Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a045260 , Zm00025a047800 , Zm00025a028432 , Zm00025a052735 , Zm00025a054387 , Zm00025a014436 , Zm00025a007941 , Zm00025a048317 , Zm00025a016321 , Zm00025a040905
Brachypodium KQK11794 , KQK07730 , KQK05873 , KQK13476 , KQK22303 , KQJ89933 , KQK22304
Barley HORVU3Hr1G068320.2 , HORVU3Hr1G014560.1 , HORVU1Hr1G071950.1 , HORVU3Hr1G099160.1 , HORVU3Hr1G068320.3 , HORVU5Hr1G109460.1 , HORVU3Hr1G116550.2 , HORVU3Hr1G116550.1 , HORVU5Hr1G109460.2 , HORVU4Hr1G029280.1 , HORVU3Hr1G116550.5 , HORVU3Hr1G116550.4 , HORVU0Hr1G016940.1 , HORVU0Hr1G016940.2 , HORVU0Hr1G016940.3 , HORVU6Hr1G006120.1 , HORVU4Hr1G058940.8 , HORVU6Hr1G006120.2 , HORVU4Hr1G058940.2 , HORVU4Hr1G058940.3 , HORVU6Hr1G092390.1 , HORVU4Hr1G058940.1 , HORVU4Hr1G058940.6 , HORVU4Hr1G058940.7 , HORVU4Hr1G058940.4 , HORVU4Hr1G058940.5 , HORVU4Hr1G070250.1 , HORVU4Hr1G070250.2 , HORVU4Hr1G070250.3 , HORVU4Hr1G070250.4 , HORVU4Hr1G070250.5 , HORVU7Hr1G100100.3 , HORVU7Hr1G100100.2 , HORVU7Hr1G100100.1 , HORVU7Hr1G117230.2 , HORVU7Hr1G030120.1 , HORVU7Hr1G030120.2 , HORVU0Hr1G013190.1 , HORVU0Hr1G013190.2 , HORVU6Hr1G029220.1 , HORVU7Hr1G112470.1 , HORVU6Hr1G029220.3 , HORVU6Hr1G029220.2 , HORVU7Hr1G117230.1 , HORVU6Hr1G003750.1 , HORVU7Hr1G117230.3 , HORVU4Hr1G090910.2 , HORVU5Hr1G069680.1 , HORVU1Hr1G005870.1 , HORVU1Hr1G005870.3 , HORVU1Hr1G005870.2 , HORVU6Hr1G011620.2 , HORVU6Hr1G011620.3 , HORVU6Hr1G011620.1 , HORVU6Hr1G011620.4 , HORVU6Hr1G005960.1 , HORVU6Hr1G005960.2 , HORVU6Hr1G005960.3 , HORVU6Hr1G005960.4 , HORVU6Hr1G005960.5 , HORVU6Hr1G005960.6 , HORVU6Hr1G005960.7 , HORVU6Hr1G005960.8 , HORVU6Hr1G005960.9 , HORVU3Hr1G116550.3 , HORVU6Hr1G006090.1 , HORVU2Hr1G043860.2 , HORVU2Hr1G043860.1 , HORVU5Hr1G090670.1 , HORVU5Hr1G090670.2 , HORVU6Hr1G006080.2 , HORVU6Hr1G006080.1 , HORVU6Hr1G092280.1 , HORVU4Hr1G058810.1 , HORVU2Hr1G110470.3 , HORVU2Hr1G110470.2 , HORVU2Hr1G110470.1 , HORVU6Hr1G092280.2 , HORVU5Hr1G069690.2 , HORVU5Hr1G069690.1 , HORVU5Hr1G105090.1 , HORVU5Hr1G105090.2 , HORVU5Hr1G105090.3 , HORVU5Hr1G105090.4 , HORVU5Hr1G105090.5 , HORVU5Hr1G105090.6 , HORVU5Hr1G108640.1 , HORVU1Hr1G071960.2 , HORVU1Hr1G071960.3 , HORVU1Hr1G071960.4 , HORVU6Hr1G011490.4 , HORVU6Hr1G011490.1 , HORVU1Hr1G071960.1 , HORVU6Hr1G011490.3 , HORVU6Hr1G011490.2 , HORVU4Hr1G008800.2 , HORVU4Hr1G008800.1 , HORVU7Hr1G100400.2 , HORVU7Hr1G100400.1 , HORVU5Hr1G082190.1 , HORVU6Hr1G006140.2 , HORVU6Hr1G006140.1 , HORVU7Hr1G100120.3 , HORVU7Hr1G100120.2 , HORVU7Hr1G100120.5 , HORVU7Hr1G100120.4 , HORVU7Hr1G100120.7 , HORVU7Hr1G100120.6 , HORVU7Hr1G100120.9 , HORVU7Hr1G100120.8 , HORVU7Hr1G100120.14 , HORVU7Hr1G100120.11 , HORVU7Hr1G100120.10 , HORVU7Hr1G100120.13 , HORVU7Hr1G100120.12 , HORVU3Hr1G068240.1 , HORVU6Hr1G005960.10 , HORVU6Hr1G006130.6 , HORVU6Hr1G006130.7 , HORVU6Hr1G006130.5 , HORVU6Hr1G009020.1 , HORVU6Hr1G005940.6 , HORVU6Hr1G005940.4 , HORVU6Hr1G005940.5 , HORVU6Hr1G005940.2 , HORVU6Hr1G005940.3 , HORVU6Hr1G005940.1
Wheat TraesCS6B02G049200 , TraesCS6B02G049000 , TraesCS1B02G049100 , TraesCS5B02G452400 , TraesCS6B02G048700 , TraesCS1A02G038200 , TraesCS1A02G286900 , TraesCS3D02G521700 , TraesCS6B02G082100 , TraesCS6D02G062300 , TraesCS6D02G062800 , TraesCS3A02G534300 , TraesCS1B02G296300 , TraesCS6A02G034600 , TraesCS1B02G357400 , TraesCS6A02G062600 , TraesCS3D02G539300 , TraesCS7D02G520000 , TraesCS7B02G449800 , TraesCS6A02G075400 , TraesCS4D02G053100 , TraesCS6A02G034300 , TraesCS1A02G038100 , TraesCS6A02G034900 , TraesCS7B02G050300 , TraesCS6B02G082300 , TraesCS1D02G285800 , TraesCS6B02G082500 , TraesCS6B02G049500 , TraesCS6D02G040800 , TraesCS5B02G473100 , TraesCS6A02G034800 , TraesCS3A02G534100 , TraesCS6D02G040700 , TraesCS6B02G048300 , TraesCS1D02G039900 , TraesCS5D02G474800 , TraesCS6D02G039900 , TraesCS3A02G102400 , TraesCS6B02G058400 , TraesCS1B02G048900 , TraesCS6A02G035100 , TraesCS6B02G082400 , TraesCS6D02G040400 , TraesCS6A02G035200 , TraesCS6D02G040300 , TraesCS6B02G048600 , TraesCS6D02G040500 , TraesCS4B02G052900 , TraesCS6A02G061700 , TraesCS7B02G408300 , TraesCS1D02G039800 , TraesCS3B02G610800 , TraesCS3D02G539700 , TraesCS7B02G408400 , TraesCS6B02G100100 , TraesCS6B02G049400 , TraesCS5A02G462100 , TraesCS6A02G042700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G403400 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
2 Sobic.003G350100 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
3 Sobic.004G265400 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
4 Sobic.007G149600 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
5 Sobic.001G193400 DUF538 domain containing protein, putative, expressed -
6 Sobic.003G067300 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
7 Sobic.002G056300 AT hook-containing DNA-binding protein, putative, expressed K11275: histone H1/5
8 Sobic.007G221800 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
9 Sobic.003G067500 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
10 Sobic.003G200501 - K11252: histone H2B
11 Sobic.002G210200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
12 Sobic.008G133100 OsWAK13 - OsWAK receptor-like protein kinase, expressed -
13 Sobic.001G441800 hydroxyproline-rich glycoprotein family protein, putative, expressed -
14 Sobic.003G092200 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
15 Sobic.008G061000 expressed protein -
16 Sobic.004G128600 salt stress root protein RS1, putative, expressed -
17 Sobic.004G329100 gibberellin 2-beta-dioxygenase 7, putative, expressed -
18 Sobic.003G367401 - -
19 Sobic.004G227000 expressed protein -
20 Sobic.002G387100 X8 domain containing protein, expressed -


Gene co-expression network
sample Sobic002G059200 Sobic002G059200 Sobic002G403400 Sobic002G403400 Sobic002G059200--Sobic002G403400 Sobic003G350100 Sobic003G350100 Sobic002G059200--Sobic003G350100 Sobic004G265400 Sobic004G265400 Sobic002G059200--Sobic004G265400 Sobic007G149600 Sobic007G149600 Sobic002G059200--Sobic007G149600 Sobic001G193400 Sobic001G193400 Sobic002G059200--Sobic001G193400 Sobic003G067300 Sobic003G067300 Sobic002G059200--Sobic003G067300 Sobic002G056300 Sobic002G056300 Sobic002G059200--Sobic002G056300 Sobic007G221800 Sobic007G221800 Sobic002G059200--Sobic007G221800 Sobic003G067500 Sobic003G067500 Sobic002G059200--Sobic003G067500 Sobic002G403400--Sobic003G350100 Sobic002G403400--Sobic002G059200 Sobic002G403400--Sobic004G265400 Sobic002G403400--Sobic003G067300 Sobic002G403400--Sobic007G149600 Sobic002G403400--Sobic001G193400 Sobic002G403400--Sobic003G067500 Sobic002G403400--Sobic007G221800 Sobic003G200501 Sobic003G200501 Sobic002G403400--Sobic003G200501 Sobic003G350100--Sobic003G067300 Sobic003G350100--Sobic004G265400 Sobic003G350100--Sobic007G149600 Sobic003G350100--Sobic001G193400 Sobic003G350100--Sobic003G067500 Sobic003G350100--Sobic003G200501 Sobic002G210200 Sobic002G210200 Sobic003G350100--Sobic002G210200 Sobic002G387100 Sobic002G387100 Sobic003G350100--Sobic002G387100 Sobic008G133100 Sobic008G133100 Sobic003G350100--Sobic008G133100 Sobic004G265400--Sobic007G149600 Sobic004G265400--Sobic007G221800 Sobic004G265400--Sobic003G350100 Sobic004G265400--Sobic003G067300 Sobic004G265400--Sobic003G067500 Sobic004G265400--Sobic003G200501 Sobic004G265400--Sobic002G210200 Sobic004G265400--Sobic001G193400 Sobic004G265400--Sobic002G059200 Sobic007G149600--Sobic004G265400 Sobic007G149600--Sobic007G221800 Sobic007G149600--Sobic003G067300 Sobic007G149600--Sobic003G200501 Sobic007G149600--Sobic002G210200 Sobic007G149600--Sobic003G350100 Sobic007G149600--Sobic003G067500 Sobic002G284901 Sobic002G284901 Sobic007G149600--Sobic002G284901 Sobic007G149600--Sobic001G193400 Sobic001G193400--Sobic003G350100 Sobic001G193400--Sobic003G067300 Sobic001G193400--Sobic004G265400 Sobic001G193400--Sobic007G149600 Sobic001G193400--Sobic003G200501 Sobic001G193400--Sobic003G067500 Sobic001G193400--Sobic002G210200 Sobic001G193400--Sobic002G387100 Sobic002G430200 Sobic002G430200 Sobic001G193400--Sobic002G430200 Sobic003G067300--Sobic003G350100 Sobic003G067300--Sobic003G200501 Sobic003G067300--Sobic003G067500 Sobic003G067300--Sobic002G210200 Sobic003G067300--Sobic007G149600 Sobic003G067300--Sobic002G387100 Sobic003G067300--Sobic002G430200 Sobic003G367401 Sobic003G367401 Sobic003G067300--Sobic003G367401 Sobic003G067300--Sobic004G265400 Sobic002G056300--Sobic002G059200 Sobic002G056300--Sobic002G403400 Sobic002G056300--Sobic003G350100 Sobic002G056300--Sobic003G067300 Sobic002G056300--Sobic004G265400 Sobic001G416800 Sobic001G416800 Sobic002G056300--Sobic001G416800 Sobic002G056300--Sobic008G133100 Sobic002G056300--Sobic007G149600 Sobic001G200500 Sobic001G200500 Sobic002G056300--Sobic001G200500 Sobic007G221800--Sobic007G149600 Sobic007G221800--Sobic003G200501 Sobic007G221800--Sobic002G210200 Sobic007G221800--Sobic004G265400 Sobic007G221800--Sobic003G067500 Sobic007G221800--Sobic002G284901 Sobic002G320900 Sobic002G320900 Sobic007G221800--Sobic002G320900 Sobic007G221800--Sobic003G067300 Sobic007G093400 Sobic007G093400 Sobic007G221800--Sobic007G093400 Sobic003G067500--Sobic003G200501 Sobic003G067500--Sobic002G210200 Sobic003G067500--Sobic003G067300 Sobic003G067500--Sobic002G284901 Sobic003G067500--Sobic007G221800 Sobic003G067500--Sobic002G320900 Sobic003G067500--Sobic004G265400 Sobic001G525000 Sobic001G525000 Sobic003G067500--Sobic001G525000 Sobic003G120400 Sobic003G120400 Sobic003G067500--Sobic003G120400
Octagon: transcription factors


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