Gene annotation
Transcriptome id Sobic.004G329100.2,Sobic.004G329100.1
Synonym Sb04g035820
Functional annotation gibberellin 2-beta-dioxygenase 7, putative, expressed
UniProt A0A1Z5RQ35 , C5XUF5
Pfam PF03171
Panther DB PTHR10209 PTHR10209:SF206
NCBI CDD KOG0143; Iron/ascorbate family oxidoreductases
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT5G58660 : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
RAP-DB (Rice) LOC_Os04g33360.1 : gibberellin 2-beta-dioxygenase 7, putative, expressed
MaizeGDB (Corn) Zm00025a041337
Brachypodium -
Barley -
Wheat TraesCS3A02G537300
Populus -


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cDNA sequences
Sobic.004G329100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G541900 "similar to Nitrate/chlorate transporter, putative, expressed"(PubMedID : 29862293)@peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
2 Sobic.004G197300 - -
3 Sobic.007G001300 "cell wall modification, deposition of casparian strips, endodermis, transmembrane"(PubMedID : 24920445)@membrane associated DUF588 domain containing protein, putative, expressed -
4 Sobic.010G224800 patellin-5, putative, expressed -
5 Sobic.003G368150 - -
6 Sobic.001G255700 - -
7 Sobic.010G114400 expressed protein -
8 Sobic.009G163500 - -
9 Sobic.010G179150 - -
10 Sobic.001G537900 AGAP010609-PA, putative, expressed K17867: DPH4, diphthamide biosynthesis protein 4
11 Sobic.008G020300 myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
12 Sobic.008G133100 OsWAK13 - OsWAK receptor-like protein kinase, expressed -
13 Sobic.003G109400 - -
14 Sobic.001G200500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heavy metal-associated domain containing protein, expressed -
15 Sobic.009G152901 - -
16 Sobic.004G354800 - -
17 Sobic.001G407000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ proteins of unknown function domain containing protein, putative, expressed -
18 Sobic.002G284800 expressed protein -
19 Sobic.002G425900 expressed protein -
20 Sobic.008G131800 zinc knuckle family protein, expressed -


Gene co-expression network
sample Sobic004G329100 Sobic004G329100 Sobic001G541900 Sobic001G541900 Sobic004G329100--Sobic001G541900 Sobic004G197300 Sobic004G197300 Sobic004G329100--Sobic004G197300 Sobic007G001300 Sobic007G001300 Sobic004G329100--Sobic007G001300 Sobic010G224800 Sobic010G224800 Sobic004G329100--Sobic010G224800 Sobic003G368150 Sobic003G368150 Sobic004G329100--Sobic003G368150 Sobic001G255700 Sobic001G255700 Sobic004G329100--Sobic001G255700 Sobic010G114400 Sobic010G114400 Sobic004G329100--Sobic010G114400 Sobic009G163500 Sobic009G163500 Sobic004G329100--Sobic009G163500 Sobic010G179150 Sobic010G179150 Sobic004G329100--Sobic010G179150 Sobic001G407000 Sobic001G407000 Sobic001G541900--Sobic001G407000 Sobic008G020300 Sobic008G020300 Sobic001G541900--Sobic008G020300 Sobic001G537900 Sobic001G537900 Sobic001G541900--Sobic001G537900 Sobic001G541900--Sobic009G163500 Sobic004G354800 Sobic004G354800 Sobic001G541900--Sobic004G354800 Sobic003G105300 Sobic003G105300 Sobic001G541900--Sobic003G105300 Sobic001G541900--Sobic004G197300 Sobic001G541900--Sobic001G255700 Sobic009G082400 Sobic009G082400 Sobic001G541900--Sobic009G082400 Sobic004G197300--Sobic010G179150 Sobic004G197300--Sobic003G368150 Sobic004G197300--Sobic001G255700 Sobic004G197300--Sobic007G001300 Sobic002G284800 Sobic002G284800 Sobic004G197300--Sobic002G284800 Sobic008G131800 Sobic008G131800 Sobic004G197300--Sobic008G131800 Sobic004G197300--Sobic009G163500 Sobic004G197300--Sobic001G537900 Sobic003G109400 Sobic003G109400 Sobic004G197300--Sobic003G109400 Sobic002G156300 Sobic002G156300 Sobic007G001300--Sobic002G156300 Sobic007G001300--Sobic010G224800 Sobic007G001300--Sobic010G114400 Sobic007G001300--Sobic003G109400 Sobic009G031100 Sobic009G031100 Sobic007G001300--Sobic009G031100 Sobic007G001300--Sobic004G197300 Sobic007G001300--Sobic003G105300 Sobic007G001300--Sobic008G020300 Sobic007G001300--Sobic010G179150 Sobic010G224800--Sobic010G114400 Sobic010G224800--Sobic007G001300 Sobic010G224800--Sobic003G109400 Sobic010G224800--Sobic002G156300 Sobic010G224800--Sobic009G031100 Sobic002G425900 Sobic002G425900 Sobic010G224800--Sobic002G425900 Sobic010G224800--Sobic003G105300 Sobic010G224800--Sobic004G197300 Sobic010G224800--Sobic009G163500 Sobic003G368150--Sobic002G284800 Sobic003G368150--Sobic001G255700 Sobic003G368150--Sobic008G131800 Sobic007G122300 Sobic007G122300 Sobic003G368150--Sobic007G122300 Sobic004G239000 Sobic004G239000 Sobic003G368150--Sobic004G239000 Sobic008G133100 Sobic008G133100 Sobic003G368150--Sobic008G133100 Sobic002G387100 Sobic002G387100 Sobic003G368150--Sobic002G387100 Sobic003G368150--Sobic004G197300 Sobic003G099500 Sobic003G099500 Sobic003G368150--Sobic003G099500 Sobic001G255700--Sobic002G284800 Sobic001G255700--Sobic003G368150 Sobic001G255700--Sobic008G131800 Sobic001G255700--Sobic004G239000 Sobic001G255700--Sobic008G133100 Sobic001G255700--Sobic003G105300 Sobic001G255700--Sobic004G197300 Sobic001G255700--Sobic010G179150 Sobic001G255700--Sobic009G163500 Sobic010G114400--Sobic010G224800 Sobic010G114400--Sobic002G156300 Sobic010G114400--Sobic007G001300 Sobic010G114400--Sobic003G109400 Sobic010G114400--Sobic009G031100 Sobic010G114400--Sobic002G425900 Sobic010G114400--Sobic004G197300 Sobic010G114400--Sobic009G163500 Sobic010G114400--Sobic003G105300 Sobic009G163500--Sobic004G354800 Sobic009G163500--Sobic003G109400 Sobic009G163500--Sobic001G255700 Sobic009G163500--Sobic008G131800 Sobic009G163500--Sobic004G197300 Sobic009G163500--Sobic003G368150 Sobic009G163500--Sobic010G179150 Sobic009G163500--Sobic001G537900 Sobic009G163500--Sobic002G284800 Sobic007G111600 Sobic007G111600 Sobic010G179150--Sobic007G111600 Sobic010G179150--Sobic008G131800 Sobic010G179150--Sobic004G197300 Sobic004G251350 Sobic004G251350 Sobic010G179150--Sobic004G251350 Sobic007G204500 Sobic007G204500 Sobic010G179150--Sobic007G204500 Sobic010G179150--Sobic001G537900 Sobic010G179150--Sobic001G255700 Sobic007G013100 Sobic007G013100 Sobic010G179150--Sobic007G013100 Sobic010G179150--Sobic002G284800
Octagon: transcription factors


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