Gene annotation
Transcriptome id Sobic.001G200500.1
Synonym Sb01g017680
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
heavy metal-associated domain containing protein, expressed
UniProt C5WWC8
Pfam PF00403
Panther DB PTHR22814 PTHR22814:SF52
NCBI CDD KOG1603; Copper chaperone
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G23760 : Copper transport protein family
RAP-DB (Rice) LOC_Os10g36200.2 : heavy metal-associated domain containing protein, expressed
MaizeGDB (Corn) Zm00025a006388
Brachypodium KQJ97370 , KQJ97371
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G200500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G133100 OsWAK13 - OsWAK receptor-like protein kinase, expressed -
2 Sobic.010G224800 patellin-5, putative, expressed -
3 Sobic.007G001300 "cell wall modification, deposition of casparian strips, endodermis, transmembrane"(PubMedID : 24920445)@membrane associated DUF588 domain containing protein, putative, expressed -
4 Sobic.009G031100 cycloeucalenol cycloisomerase, putative, expressed K08246: cycloeucalenol cycloisomerase
5 Sobic.001G255700 - -
6 Sobic.002G284800 expressed protein -
7 Sobic.003G109400 - -
8 Sobic.002G156300 - -
9 Sobic.003G368150 - -
10 Sobic.003G105300 - -
11 Sobic.004G197300 - -
12 Sobic.010G114400 expressed protein -
13 Sobic.009G163500 - -
14 Sobic.001G407000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ proteins of unknown function domain containing protein, putative, expressed -
15 Sobic.002G425900 expressed protein -
16 Sobic.001G441800 hydroxyproline-rich glycoprotein family protein, putative, expressed -
17 Sobic.008G020300 myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
18 Sobic.004G330400 expressed protein -
19 Sobic.010G179150 - -
20 Sobic.008G131800 zinc knuckle family protein, expressed -


Gene co-expression network
sample Sobic001G200500 Sobic001G200500 Sobic008G133100 Sobic008G133100 Sobic001G200500--Sobic008G133100 Sobic010G224800 Sobic010G224800 Sobic001G200500--Sobic010G224800 Sobic007G001300 Sobic007G001300 Sobic001G200500--Sobic007G001300 Sobic009G031100 Sobic009G031100 Sobic001G200500--Sobic009G031100 Sobic001G255700 Sobic001G255700 Sobic001G200500--Sobic001G255700 Sobic002G284800 Sobic002G284800 Sobic001G200500--Sobic002G284800 Sobic003G109400 Sobic003G109400 Sobic001G200500--Sobic003G109400 Sobic002G156300 Sobic002G156300 Sobic001G200500--Sobic002G156300 Sobic003G368150 Sobic003G368150 Sobic001G200500--Sobic003G368150 Sobic008G133100--Sobic002G284800 Sobic008G133100--Sobic001G255700 Sobic008G133100--Sobic003G368150 Sobic001G441800 Sobic001G441800 Sobic008G133100--Sobic001G441800 Sobic004G239000 Sobic004G239000 Sobic008G133100--Sobic004G239000 Sobic008G131800 Sobic008G131800 Sobic008G133100--Sobic008G131800 Sobic003G105300 Sobic003G105300 Sobic008G133100--Sobic003G105300 Sobic004G197300 Sobic004G197300 Sobic008G133100--Sobic004G197300 Sobic008G133100--Sobic001G200500 Sobic010G114400 Sobic010G114400 Sobic010G224800--Sobic010G114400 Sobic010G224800--Sobic007G001300 Sobic010G224800--Sobic003G109400 Sobic010G224800--Sobic002G156300 Sobic010G224800--Sobic009G031100 Sobic002G425900 Sobic002G425900 Sobic010G224800--Sobic002G425900 Sobic010G224800--Sobic003G105300 Sobic010G224800--Sobic004G197300 Sobic009G163500 Sobic009G163500 Sobic010G224800--Sobic009G163500 Sobic007G001300--Sobic002G156300 Sobic007G001300--Sobic010G224800 Sobic007G001300--Sobic010G114400 Sobic007G001300--Sobic003G109400 Sobic007G001300--Sobic009G031100 Sobic007G001300--Sobic004G197300 Sobic007G001300--Sobic003G105300 Sobic008G020300 Sobic008G020300 Sobic007G001300--Sobic008G020300 Sobic010G179150 Sobic010G179150 Sobic007G001300--Sobic010G179150 Sobic009G031100--Sobic002G156300 Sobic009G031100--Sobic007G001300 Sobic009G031100--Sobic010G224800 Sobic009G031100--Sobic010G114400 Sobic009G031100--Sobic003G109400 Sobic010G114500 Sobic010G114500 Sobic009G031100--Sobic010G114500 Sobic009G031100--Sobic003G105300 Sobic002G206200 Sobic002G206200 Sobic009G031100--Sobic002G206200 Sobic009G031100--Sobic004G197300 Sobic001G255700--Sobic002G284800 Sobic001G255700--Sobic003G368150 Sobic001G255700--Sobic008G131800 Sobic001G255700--Sobic004G239000 Sobic001G255700--Sobic008G133100 Sobic001G255700--Sobic003G105300 Sobic001G255700--Sobic004G197300 Sobic001G255700--Sobic010G179150 Sobic001G255700--Sobic009G163500 Sobic002G284800--Sobic003G368150 Sobic002G284800--Sobic001G255700 Sobic002G284800--Sobic004G239000 Sobic002G284800--Sobic008G131800 Sobic002G284800--Sobic008G133100 Sobic003G099500 Sobic003G099500 Sobic002G284800--Sobic003G099500 Sobic002G387100 Sobic002G387100 Sobic002G284800--Sobic002G387100 Sobic007G122300 Sobic007G122300 Sobic002G284800--Sobic007G122300 Sobic002G284800--Sobic003G105300 Sobic003G109400--Sobic002G156300 Sobic003G109400--Sobic010G224800 Sobic003G109400--Sobic007G001300 Sobic003G109400--Sobic010G114400 Sobic003G109400--Sobic009G163500 Sobic003G109400--Sobic009G031100 Sobic003G109400--Sobic008G020300 Sobic003G109400--Sobic002G206200 Sobic003G109400--Sobic004G197300 Sobic002G156300--Sobic007G001300 Sobic002G156300--Sobic003G109400 Sobic002G156300--Sobic010G114400 Sobic002G156300--Sobic010G224800 Sobic002G156300--Sobic009G031100 Sobic002G156300--Sobic003G105300 Sobic002G156300--Sobic004G197300 Sobic002G156300--Sobic008G020300 Sobic002G156300--Sobic009G163500 Sobic003G368150--Sobic002G284800 Sobic003G368150--Sobic001G255700 Sobic003G368150--Sobic008G131800 Sobic003G368150--Sobic007G122300 Sobic003G368150--Sobic004G239000 Sobic003G368150--Sobic008G133100 Sobic003G368150--Sobic002G387100 Sobic003G368150--Sobic004G197300 Sobic003G368150--Sobic003G099500
Octagon: transcription factors


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