Gene annotation
Transcriptome id Sobic.008G131800.1
Synonym emb1441, Sb08g018400
Functional annotation zinc knuckle family protein, expressed
UniProt A0A1B6PDF8
Pfam PF00098 PF11923 PF05670 PF05833
Panther DB PTHR15239 PTHR15239:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G49930 : zinc knuckle (CCHC-type) family protein
RAP-DB (Rice) LOC_Os12g37720.1 : zinc knuckle family protein, expressed
MaizeGDB (Corn) Zm00025a025448
Brachypodium KQJ86313
Barley HORVU5Hr1G022740.4 , HORVU5Hr1G022740.5 , HORVU5Hr1G022740.6 , HORVU5Hr1G022740.7 , HORVU5Hr1G022740.1 , HORVU5Hr1G022740.2 , HORVU5Hr1G022740.3
Wheat TraesCS5D02G098900 , TraesCS5D02G098900 , TraesCS5D02G098900 , TraesCS5A02G087300 , TraesCS5A02G087300 , TraesCS5B02G093200 , TraesCS5B02G093200 , TraesCS5B02G093200
Populus -


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cDNA sequences
Sobic.008G131800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G239000 - -
2 Sobic.002G284800 expressed protein -
3 Sobic.001G255700 - -
4 Sobic.003G368150 - -
5 Sobic.007G111600 WRKY89, expressed -
6 Sobic.010G179150 - -
7 Sobic.007G122300 - -
8 Sobic.003G099500 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
9 Sobic.001G016900 RNA-binding protein Luc7-like, putative, expressed -
10 Sobic.004G251350 - -
11 Sobic.009G163500 - -
12 Sobic.004G197300 - -
13 Sobic.002G387100 X8 domain containing protein, expressed -
14 Sobic.002G430200 PSF2 - Putative GINS complex subunit, expressed K10733: GINS2, GINS complex subunit 2
15 Sobic.001G537900 AGAP010609-PA, putative, expressed K17867: DPH4, diphthamide biosynthesis protein 4
16 Sobic.007G116600 5-AMP-activated protein kinase beta-1 subunit-related, putative, expressed -
17 Sobic.008G133100 OsWAK13 - OsWAK receptor-like protein kinase, expressed -
18 Sobic.007G013100 OsFBX142 - F-box domain containing protein, expressed -
19 Sobic.003G105300 - -
20 Sobic.001G120100 DUF1295 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic008G131800 Sobic008G131800 Sobic004G239000 Sobic004G239000 Sobic008G131800--Sobic004G239000 Sobic002G284800 Sobic002G284800 Sobic008G131800--Sobic002G284800 Sobic001G255700 Sobic001G255700 Sobic008G131800--Sobic001G255700 Sobic003G368150 Sobic003G368150 Sobic008G131800--Sobic003G368150 Sobic007G111600 Sobic007G111600 Sobic008G131800--Sobic007G111600 Sobic010G179150 Sobic010G179150 Sobic008G131800--Sobic010G179150 Sobic007G122300 Sobic007G122300 Sobic008G131800--Sobic007G122300 Sobic003G099500 Sobic003G099500 Sobic008G131800--Sobic003G099500 Sobic001G016900 Sobic001G016900 Sobic008G131800--Sobic001G016900 Sobic004G239000--Sobic003G099500 Sobic004G239000--Sobic008G131800 Sobic004G239000--Sobic002G284800 Sobic002G430200 Sobic002G430200 Sobic004G239000--Sobic002G430200 Sobic004G239000--Sobic001G016900 Sobic004G239000--Sobic003G368150 Sobic004G239000--Sobic001G255700 Sobic002G387100 Sobic002G387100 Sobic004G239000--Sobic002G387100 Sobic004G239000--Sobic007G122300 Sobic002G284800--Sobic003G368150 Sobic002G284800--Sobic001G255700 Sobic002G284800--Sobic004G239000 Sobic002G284800--Sobic008G131800 Sobic008G133100 Sobic008G133100 Sobic002G284800--Sobic008G133100 Sobic002G284800--Sobic003G099500 Sobic002G284800--Sobic002G387100 Sobic002G284800--Sobic007G122300 Sobic003G105300 Sobic003G105300 Sobic002G284800--Sobic003G105300 Sobic001G255700--Sobic002G284800 Sobic001G255700--Sobic003G368150 Sobic001G255700--Sobic008G131800 Sobic001G255700--Sobic004G239000 Sobic001G255700--Sobic008G133100 Sobic001G255700--Sobic003G105300 Sobic004G197300 Sobic004G197300 Sobic001G255700--Sobic004G197300 Sobic001G255700--Sobic010G179150 Sobic009G163500 Sobic009G163500 Sobic001G255700--Sobic009G163500 Sobic003G368150--Sobic002G284800 Sobic003G368150--Sobic001G255700 Sobic003G368150--Sobic008G131800 Sobic003G368150--Sobic007G122300 Sobic003G368150--Sobic004G239000 Sobic003G368150--Sobic008G133100 Sobic003G368150--Sobic002G387100 Sobic003G368150--Sobic004G197300 Sobic003G368150--Sobic003G099500 Sobic007G111600--Sobic008G131800 Sobic007G111600--Sobic010G179150 Sobic004G251350 Sobic004G251350 Sobic007G111600--Sobic004G251350 Sobic007G204500 Sobic007G204500 Sobic007G111600--Sobic007G204500 Sobic007G116600 Sobic007G116600 Sobic007G111600--Sobic007G116600 Sobic007G111600--Sobic004G239000 Sobic007G111600--Sobic003G099500 Sobic007G111600--Sobic001G016900 Sobic007G013100 Sobic007G013100 Sobic007G111600--Sobic007G013100 Sobic010G179150--Sobic007G111600 Sobic010G179150--Sobic008G131800 Sobic010G179150--Sobic004G197300 Sobic010G179150--Sobic004G251350 Sobic010G179150--Sobic007G204500 Sobic001G537900 Sobic001G537900 Sobic010G179150--Sobic001G537900 Sobic010G179150--Sobic001G255700 Sobic010G179150--Sobic007G013100 Sobic010G179150--Sobic002G284800 Sobic007G122300--Sobic002G430200 Sobic007G122300--Sobic002G387100 Sobic007G122300--Sobic003G368150 Sobic007G122300--Sobic004G239000 Sobic007G122300--Sobic003G099500 Sobic003G367401 Sobic003G367401 Sobic007G122300--Sobic003G367401 Sobic007G122300--Sobic008G131800 Sobic007G122300--Sobic002G284800 Sobic001G441800 Sobic001G441800 Sobic007G122300--Sobic001G441800 Sobic003G099500--Sobic004G239000 Sobic003G099500--Sobic002G387100 Sobic003G099500--Sobic002G430200 Sobic003G099500--Sobic001G016900 Sobic003G099500--Sobic007G122300 Sobic003G099500--Sobic002G284800 Sobic003G099500--Sobic008G131800 Sobic003G099500--Sobic003G368150 Sobic003G099500--Sobic007G111600 Sobic001G016900--Sobic004G239000 Sobic001G016900--Sobic003G099500 Sobic001G016900--Sobic003G367401 Sobic001G016900--Sobic007G111600 Sobic001G016900--Sobic008G131800 Sobic001G016900--Sobic002G430200 Sobic010G201000 Sobic010G201000 Sobic001G016900--Sobic010G201000 Sobic002G004100 Sobic002G004100 Sobic001G016900--Sobic002G004100 Sobic004G016600 Sobic004G016600 Sobic001G016900--Sobic004G016600
Octagon: transcription factors


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