Gene annotation
Transcriptome id Sobic.007G116600.1
Synonym Sb07g019250, LSF1
Functional annotation 5-AMP-activated protein kinase beta-1 subunit-related, putative, expressed
UniProt A0A1Z5R9X3
Pfam PF00782 PF16561
Panther DB PTHR10343 PTHR10343:SF57
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008138; protein tyrosine/serine/threonine phosphatase activity GO:0006470protein dephosphorylation


Orthologs (automatic annotation)
TAIR AT3G01510 : like SEX4 1
RAP-DB (Rice) LOC_Os08g29160.1 : 5-AMP-activated protein kinase beta-1 subunit-related, putative, expressed
MaizeGDB (Corn) Zm00025a006111
Brachypodium KQJ98117
Barley HORVU1Hr1G093880.3 , HORVU1Hr1G093880.2 , HORVU1Hr1G093880.1 , HORVU1Hr1G093880.6 , HORVU1Hr1G093880.5 , HORVU1Hr1G093880.4
Wheat TraesCS1D02G440600 , TraesCS1D02G440600 , TraesCS1D02G440600 , TraesCS1A02G431500 , TraesCS1A02G431500 , TraesCS1B02G466300 , TraesCS1B02G466300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G111600 WRKY89, expressed -
2 Sobic.007G013100 OsFBX142 - F-box domain containing protein, expressed -
3 Sobic.003G099500 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
4 Sobic.001G016900 RNA-binding protein Luc7-like, putative, expressed -
5 Sobic.007G204500 expressed protein -
6 Sobic.004G239000 - -
7 Sobic.008G131800 zinc knuckle family protein, expressed -
8 Sobic.010G179150 - -
9 Sobic.004G251350 - -
10 Sobic.009G085600 acetyltransferase, GNAT family, putative, expressed -
11 Sobic.004G016600 GDSL-like lipase/acylhydrolase, putative, expressed -
12 Sobic.001G255700 - -
13 Sobic.002G284800 expressed protein -
14 Sobic.001G120100 DUF1295 domain containing protein, putative, expressed -
15 Sobic.002G004100 kinesin motor domain containing protein, putative, expressed K10405: kinesin family member C1
16 Sobic.008G119000 cysteine protease, putative, expressed -
17 Sobic.002G387100 X8 domain containing protein, expressed -
18 Sobic.003G368150 - -
19 Sobic.003G167825 - -
20 Sobic.001G537900 AGAP010609-PA, putative, expressed K17867: DPH4, diphthamide biosynthesis protein 4


Gene co-expression network
sample Sobic007G116600 Sobic007G116600 Sobic007G111600 Sobic007G111600 Sobic007G116600--Sobic007G111600 Sobic007G013100 Sobic007G013100 Sobic007G116600--Sobic007G013100 Sobic003G099500 Sobic003G099500 Sobic007G116600--Sobic003G099500 Sobic001G016900 Sobic001G016900 Sobic007G116600--Sobic001G016900 Sobic007G204500 Sobic007G204500 Sobic007G116600--Sobic007G204500 Sobic004G239000 Sobic004G239000 Sobic007G116600--Sobic004G239000 Sobic008G131800 Sobic008G131800 Sobic007G116600--Sobic008G131800 Sobic010G179150 Sobic010G179150 Sobic007G116600--Sobic010G179150 Sobic004G251350 Sobic004G251350 Sobic007G116600--Sobic004G251350 Sobic007G111600--Sobic008G131800 Sobic007G111600--Sobic010G179150 Sobic007G111600--Sobic004G251350 Sobic007G111600--Sobic007G204500 Sobic007G111600--Sobic007G116600 Sobic007G111600--Sobic004G239000 Sobic007G111600--Sobic003G099500 Sobic007G111600--Sobic001G016900 Sobic007G111600--Sobic007G013100 Sobic007G013100--Sobic007G116600 Sobic007G013100--Sobic010G179150 Sobic007G013100--Sobic007G111600 Sobic007G013100--Sobic003G099500 Sobic007G013100--Sobic004G251350 Sobic007G013100--Sobic001G016900 Sobic007G013100--Sobic008G131800 Sobic003G368150 Sobic003G368150 Sobic007G013100--Sobic003G368150 Sobic004G016600 Sobic004G016600 Sobic007G013100--Sobic004G016600 Sobic003G099500--Sobic004G239000 Sobic002G387100 Sobic002G387100 Sobic003G099500--Sobic002G387100 Sobic002G430200 Sobic002G430200 Sobic003G099500--Sobic002G430200 Sobic003G099500--Sobic001G016900 Sobic007G122300 Sobic007G122300 Sobic003G099500--Sobic007G122300 Sobic002G284800 Sobic002G284800 Sobic003G099500--Sobic002G284800 Sobic003G099500--Sobic008G131800 Sobic003G099500--Sobic003G368150 Sobic003G099500--Sobic007G111600 Sobic001G016900--Sobic004G239000 Sobic001G016900--Sobic003G099500 Sobic003G367401 Sobic003G367401 Sobic001G016900--Sobic003G367401 Sobic001G016900--Sobic007G111600 Sobic001G016900--Sobic008G131800 Sobic001G016900--Sobic002G430200 Sobic010G201000 Sobic010G201000 Sobic001G016900--Sobic010G201000 Sobic002G004100 Sobic002G004100 Sobic001G016900--Sobic002G004100 Sobic001G016900--Sobic004G016600 Sobic007G204500--Sobic007G111600 Sobic007G204500--Sobic004G251350 Sobic007G204500--Sobic010G179150 Sobic007G161450 Sobic007G161450 Sobic007G204500--Sobic007G161450 Sobic007G204500--Sobic007G116600 Sobic008G119000 Sobic008G119000 Sobic007G204500--Sobic008G119000 Sobic001G537900 Sobic001G537900 Sobic007G204500--Sobic001G537900 Sobic006G180500 Sobic006G180500 Sobic007G204500--Sobic006G180500 Sobic001G120100 Sobic001G120100 Sobic007G204500--Sobic001G120100 Sobic004G239000--Sobic003G099500 Sobic004G239000--Sobic008G131800 Sobic004G239000--Sobic002G284800 Sobic004G239000--Sobic002G430200 Sobic004G239000--Sobic001G016900 Sobic004G239000--Sobic003G368150 Sobic001G255700 Sobic001G255700 Sobic004G239000--Sobic001G255700 Sobic004G239000--Sobic002G387100 Sobic004G239000--Sobic007G122300 Sobic008G131800--Sobic004G239000 Sobic008G131800--Sobic002G284800 Sobic008G131800--Sobic001G255700 Sobic008G131800--Sobic003G368150 Sobic008G131800--Sobic007G111600 Sobic008G131800--Sobic010G179150 Sobic008G131800--Sobic007G122300 Sobic008G131800--Sobic003G099500 Sobic008G131800--Sobic001G016900 Sobic010G179150--Sobic007G111600 Sobic010G179150--Sobic008G131800 Sobic004G197300 Sobic004G197300 Sobic010G179150--Sobic004G197300 Sobic010G179150--Sobic004G251350 Sobic010G179150--Sobic007G204500 Sobic010G179150--Sobic001G537900 Sobic010G179150--Sobic001G255700 Sobic010G179150--Sobic007G013100 Sobic010G179150--Sobic002G284800 Sobic004G251350--Sobic007G111600 Sobic004G251350--Sobic010G179150 Sobic004G251350--Sobic007G204500 Sobic004G251350--Sobic008G131800 Sobic004G251350--Sobic001G537900 Sobic004G251350--Sobic001G120100 Sobic009G082400 Sobic009G082400 Sobic004G251350--Sobic009G082400 Sobic004G251350--Sobic004G016600 Sobic004G251350--Sobic007G013100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.