Gene annotation
Transcriptome id Sobic.001G016900.1,Sobic.001G016900.2,Sobic.001G016900.4,Sobic.001G016900.3
Synonym Sb01g001640
Functional annotation RNA-binding protein Luc7-like, putative, expressed
UniProt A0A1B6QGY6 , A0A1B6QGV3 , A0A1Z5S4H0 , A0A1B6QGW2
Pfam PF03194
Panther DB PTHR12375 PTHR12375:SF32
NCBI CDD KOG0796; Spliceosome subunit
KEGG Orthology -
Gene Ontology GO:0006376; mRNA splice site selection GO:0005685U1 snRNP GO:0003729mRNA binding


Orthologs (automatic annotation)
TAIR AT3G03340 : LUC7 related protein
RAP-DB (Rice) LOC_Os03g62640.2,LOC_Os03g62640.3,LOC_Os03g62640.4 : RNA-binding protein Luc7-like, putative, expressed
MaizeGDB (Corn) Zm00025a016350 , Zm00025a008983
Brachypodium KQK12178 , KQK12176 , KQK12177
Barley HORVU5Hr1G120260.14 , HORVU5Hr1G120260.15 , HORVU5Hr1G120260.16 , HORVU5Hr1G120260.17 , HORVU5Hr1G120260.10 , HORVU5Hr1G120260.11 , HORVU5Hr1G120260.12 , HORVU5Hr1G120260.13 , HORVU5Hr1G120260.18 , HORVU5Hr1G120260.19 , HORVU6Hr1G055580.8 , HORVU6Hr1G055580.3 , HORVU6Hr1G055580.2 , HORVU6Hr1G055580.1 , HORVU6Hr1G055580.7 , HORVU6Hr1G055580.6 , HORVU6Hr1G055580.5 , HORVU6Hr1G055580.4 , HORVU5Hr1G120260.20 , HORVU5Hr1G120260.8 , HORVU5Hr1G120260.9 , HORVU5Hr1G120260.6 , HORVU5Hr1G120260.7 , HORVU5Hr1G120260.4 , HORVU5Hr1G120260.5 , HORVU5Hr1G120260.2 , HORVU5Hr1G120260.3 , HORVU5Hr1G120260.1
Wheat TraesCS4A02G342700 , TraesCS4A02G342700 , TraesCS5B02G532000 , TraesCS6A02G217400 , TraesCS5D02G530300 , TraesCS5D02G530300 , TraesCS5D02G530300 , TraesCS5B02G532000 , TraesCS6D02G199700 , TraesCS6D02G199700 , TraesCS6D02G199700 , TraesCS6D02G199700 , TraesCS6B02G247200 , TraesCS6B02G247200
Populus -


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cDNA sequences
Sobic.001G016900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G239000 - -
2 Sobic.003G099500 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
3 Sobic.003G367401 - -
4 Sobic.007G111600 WRKY89, expressed -
5 Sobic.008G131800 zinc knuckle family protein, expressed -
6 Sobic.002G430200 PSF2 - Putative GINS complex subunit, expressed K10733: GINS2, GINS complex subunit 2
7 Sobic.010G201000 - -
8 Sobic.002G004100 kinesin motor domain containing protein, putative, expressed K10405: kinesin family member C1
9 Sobic.004G016600 GDSL-like lipase/acylhydrolase, putative, expressed -
10 Sobic.009G152901 - -
11 Sobic.007G116600 5-AMP-activated protein kinase beta-1 subunit-related, putative, expressed -
12 Sobic.002G387100 X8 domain containing protein, expressed -
13 Sobic.007G122300 - -
14 Sobic.001G120100 DUF1295 domain containing protein, putative, expressed -
15 Sobic.001G525000 polygalacturonase, putative, expressed -
16 Sobic.007G013100 OsFBX142 - F-box domain containing protein, expressed -
17 Sobic.003G368150 - -
18 Sobic.002G284800 expressed protein -
19 Sobic.001G255700 - -
20 Sobic.009G085600 acetyltransferase, GNAT family, putative, expressed -


Gene co-expression network
sample Sobic001G016900 Sobic001G016900 Sobic004G239000 Sobic004G239000 Sobic001G016900--Sobic004G239000 Sobic003G099500 Sobic003G099500 Sobic001G016900--Sobic003G099500 Sobic003G367401 Sobic003G367401 Sobic001G016900--Sobic003G367401 Sobic007G111600 Sobic007G111600 Sobic001G016900--Sobic007G111600 Sobic008G131800 Sobic008G131800 Sobic001G016900--Sobic008G131800 Sobic002G430200 Sobic002G430200 Sobic001G016900--Sobic002G430200 Sobic010G201000 Sobic010G201000 Sobic001G016900--Sobic010G201000 Sobic002G004100 Sobic002G004100 Sobic001G016900--Sobic002G004100 Sobic004G016600 Sobic004G016600 Sobic001G016900--Sobic004G016600 Sobic004G239000--Sobic003G099500 Sobic004G239000--Sobic008G131800 Sobic002G284800 Sobic002G284800 Sobic004G239000--Sobic002G284800 Sobic004G239000--Sobic002G430200 Sobic004G239000--Sobic001G016900 Sobic003G368150 Sobic003G368150 Sobic004G239000--Sobic003G368150 Sobic001G255700 Sobic001G255700 Sobic004G239000--Sobic001G255700 Sobic002G387100 Sobic002G387100 Sobic004G239000--Sobic002G387100 Sobic007G122300 Sobic007G122300 Sobic004G239000--Sobic007G122300 Sobic003G099500--Sobic004G239000 Sobic003G099500--Sobic002G387100 Sobic003G099500--Sobic002G430200 Sobic003G099500--Sobic001G016900 Sobic003G099500--Sobic007G122300 Sobic003G099500--Sobic002G284800 Sobic003G099500--Sobic008G131800 Sobic003G099500--Sobic003G368150 Sobic003G099500--Sobic007G111600 Sobic003G367401--Sobic002G430200 Sobic003G367401--Sobic010G201000 Sobic001G525000 Sobic001G525000 Sobic003G367401--Sobic001G525000 Sobic003G367401--Sobic002G387100 Sobic003G367401--Sobic007G122300 Sobic007G093400 Sobic007G093400 Sobic003G367401--Sobic007G093400 Sobic003G367401--Sobic004G239000 Sobic003G367401--Sobic001G016900 Sobic003G120400 Sobic003G120400 Sobic003G367401--Sobic003G120400 Sobic007G111600--Sobic008G131800 Sobic010G179150 Sobic010G179150 Sobic007G111600--Sobic010G179150 Sobic004G251350 Sobic004G251350 Sobic007G111600--Sobic004G251350 Sobic007G204500 Sobic007G204500 Sobic007G111600--Sobic007G204500 Sobic007G116600 Sobic007G116600 Sobic007G111600--Sobic007G116600 Sobic007G111600--Sobic004G239000 Sobic007G111600--Sobic003G099500 Sobic007G111600--Sobic001G016900 Sobic007G013100 Sobic007G013100 Sobic007G111600--Sobic007G013100 Sobic008G131800--Sobic004G239000 Sobic008G131800--Sobic002G284800 Sobic008G131800--Sobic001G255700 Sobic008G131800--Sobic003G368150 Sobic008G131800--Sobic007G111600 Sobic008G131800--Sobic010G179150 Sobic008G131800--Sobic007G122300 Sobic008G131800--Sobic003G099500 Sobic008G131800--Sobic001G016900 Sobic002G430200--Sobic002G387100 Sobic002G430200--Sobic007G122300 Sobic002G430200--Sobic003G099500 Sobic002G430200--Sobic003G367401 Sobic002G430200--Sobic001G525000 Sobic002G430200--Sobic004G239000 Sobic002G430200--Sobic003G120400 Sobic002G430200--Sobic010G201000 Sobic002G430200--Sobic002G284800 Sobic010G201000--Sobic003G367401 Sobic010G201000--Sobic007G093400 Sobic010G201000--Sobic002G430200 Sobic010G074980 Sobic010G074980 Sobic010G201000--Sobic010G074980 Sobic010G201000--Sobic001G525000 Sobic010G201000--Sobic002G387100 Sobic010G201000--Sobic003G120400 Sobic010G201000--Sobic001G016900 Sobic010G201000--Sobic003G099500 Sobic002G004100--Sobic001G016900 Sobic009G085600 Sobic009G085600 Sobic002G004100--Sobic009G085600 Sobic002G004100--Sobic007G111600 Sobic003G167825 Sobic003G167825 Sobic002G004100--Sobic003G167825 Sobic001G460800 Sobic001G460800 Sobic002G004100--Sobic001G460800 Sobic002G004100--Sobic003G367401 Sobic002G004100--Sobic004G239000 Sobic002G004100--Sobic003G099500 Sobic002G004100--Sobic004G016600 Sobic001G120100 Sobic001G120100 Sobic004G016600--Sobic001G120100 Sobic004G016600--Sobic001G016900 Sobic004G016600--Sobic009G085600 Sobic004G016600--Sobic004G251350 Sobic001G537900 Sobic001G537900 Sobic004G016600--Sobic001G537900 Sobic004G016600--Sobic007G013100 Sobic004G016600--Sobic003G167825 Sobic004G016600--Sobic007G111600 Sobic009G152901 Sobic009G152901 Sobic004G016600--Sobic009G152901
Octagon: transcription factors


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