Gene annotation
Transcriptome id Sobic.001G525000.1
Synonym Sb01g048880
Functional annotation polygalacturonase, putative, expressed
UniProt C5X022
Pfam PF12708
Panther DB PTHR31339 PTHR31339:SF12
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G48950 : Pectin lyase-like superfamily protein
RAP-DB (Rice) LOC_Os03g03350.1 : polygalacturonase, putative, expressed
MaizeGDB (Corn) Zm00025a000331
Brachypodium KQK23903
Barley HORVU4Hr1G084400.8 , HORVU4Hr1G084400.9 , HORVU4Hr1G084400.2 , HORVU4Hr1G084400.1 , HORVU4Hr1G084400.6 , HORVU4Hr1G084400.7 , HORVU4Hr1G084400.4 , HORVU4Hr1G084400.5 , HORVU4Hr1G084400.10
Wheat TraesCS4B02G344700 , TraesCS4B02G344700 , TraesCS5A02G513600
Populus -


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cDNA sequences
Sobic.001G525000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G120400 expressed protein -
2 Sobic.002G320900 patatin-like phospholipase family protein, expressed -
3 Sobic.002G430200 PSF2 - Putative GINS complex subunit, expressed K10733: GINS2, GINS complex subunit 2
4 Sobic.002G284901 - -
5 Sobic.003G367401 - -
6 Sobic.002G387100 X8 domain containing protein, expressed -
7 Sobic.002G210200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
8 Sobic.003G200501 - K11252: histone H2B
9 Sobic.007G093400 - -
10 Sobic.010G201000 - -
11 Sobic.001G460800 nucleotidyltransferase, putative, expressed -
12 Sobic.003G099500 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
13 Sobic.007G122300 - -
14 Sobic.001G130900 expressed protein -
15 Sobic.001G016900 RNA-binding protein Luc7-like, putative, expressed -
16 Sobic.004G239000 - -
17 Sobic.003G067300 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
18 Sobic.003G067500 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
19 Sobic.006G065700 DUF677 domain containing protein, putative, expressed -
20 Sobic.010G074980 - -


Gene co-expression network
sample Sobic001G525000 Sobic001G525000 Sobic003G120400 Sobic003G120400 Sobic001G525000--Sobic003G120400 Sobic002G320900 Sobic002G320900 Sobic001G525000--Sobic002G320900 Sobic002G430200 Sobic002G430200 Sobic001G525000--Sobic002G430200 Sobic002G284901 Sobic002G284901 Sobic001G525000--Sobic002G284901 Sobic003G367401 Sobic003G367401 Sobic001G525000--Sobic003G367401 Sobic002G387100 Sobic002G387100 Sobic001G525000--Sobic002G387100 Sobic002G210200 Sobic002G210200 Sobic001G525000--Sobic002G210200 Sobic003G200501 Sobic003G200501 Sobic001G525000--Sobic003G200501 Sobic007G093400 Sobic007G093400 Sobic001G525000--Sobic007G093400 Sobic003G120400--Sobic001G525000 Sobic003G120400--Sobic002G320900 Sobic003G120400--Sobic007G093400 Sobic003G120400--Sobic002G284901 Sobic003G120400--Sobic003G200501 Sobic003G120400--Sobic002G210200 Sobic001G130900 Sobic001G130900 Sobic003G120400--Sobic001G130900 Sobic003G120400--Sobic002G430200 Sobic003G120400--Sobic003G367401 Sobic002G320900--Sobic002G284901 Sobic002G320900--Sobic001G525000 Sobic002G320900--Sobic003G120400 Sobic002G320900--Sobic002G210200 Sobic002G320900--Sobic003G200501 Sobic002G320900--Sobic007G093400 Sobic006G065700 Sobic006G065700 Sobic002G320900--Sobic006G065700 Sobic001G460800 Sobic001G460800 Sobic002G320900--Sobic001G460800 Sobic002G320900--Sobic003G367401 Sobic002G430200--Sobic002G387100 Sobic007G122300 Sobic007G122300 Sobic002G430200--Sobic007G122300 Sobic003G099500 Sobic003G099500 Sobic002G430200--Sobic003G099500 Sobic002G430200--Sobic003G367401 Sobic002G430200--Sobic001G525000 Sobic004G239000 Sobic004G239000 Sobic002G430200--Sobic004G239000 Sobic002G430200--Sobic003G120400 Sobic010G201000 Sobic010G201000 Sobic002G430200--Sobic010G201000 Sobic002G284800 Sobic002G284800 Sobic002G430200--Sobic002G284800 Sobic002G284901--Sobic002G320900 Sobic002G284901--Sobic003G200501 Sobic002G284901--Sobic002G210200 Sobic002G284901--Sobic003G120400 Sobic002G284901--Sobic001G525000 Sobic002G284901--Sobic007G093400 Sobic002G284901--Sobic006G065700 Sobic003G067500 Sobic003G067500 Sobic002G284901--Sobic003G067500 Sobic002G284901--Sobic002G430200 Sobic003G367401--Sobic002G430200 Sobic003G367401--Sobic010G201000 Sobic003G367401--Sobic001G525000 Sobic003G367401--Sobic002G387100 Sobic003G367401--Sobic007G122300 Sobic003G367401--Sobic007G093400 Sobic003G367401--Sobic004G239000 Sobic001G016900 Sobic001G016900 Sobic003G367401--Sobic001G016900 Sobic003G367401--Sobic003G120400 Sobic002G387100--Sobic002G430200 Sobic002G387100--Sobic007G122300 Sobic002G387100--Sobic003G099500 Sobic002G387100--Sobic004G239000 Sobic002G387100--Sobic001G525000 Sobic002G387100--Sobic003G367401 Sobic002G387100--Sobic002G284800 Sobic003G368150 Sobic003G368150 Sobic002G387100--Sobic003G368150 Sobic002G387100--Sobic003G120400 Sobic002G210200--Sobic003G200501 Sobic002G210200--Sobic003G067500 Sobic002G210200--Sobic002G320900 Sobic002G210200--Sobic002G284901 Sobic002G210200--Sobic001G525000 Sobic002G210200--Sobic003G120400 Sobic002G210200--Sobic007G093400 Sobic003G067300 Sobic003G067300 Sobic002G210200--Sobic003G067300 Sobic007G221800 Sobic007G221800 Sobic002G210200--Sobic007G221800 Sobic003G200501--Sobic002G210200 Sobic003G200501--Sobic003G067500 Sobic003G200501--Sobic002G284901 Sobic003G200501--Sobic002G320900 Sobic003G200501--Sobic003G120400 Sobic003G200501--Sobic001G525000 Sobic003G200501--Sobic003G067300 Sobic003G200501--Sobic007G221800 Sobic003G200501--Sobic007G093400 Sobic007G093400--Sobic003G120400 Sobic007G093400--Sobic002G320900 Sobic007G093400--Sobic001G525000 Sobic007G093400--Sobic010G201000 Sobic007G093400--Sobic003G367401 Sobic003G065001 Sobic003G065001 Sobic007G093400--Sobic003G065001 Sobic007G093400--Sobic002G210200 Sobic007G093400--Sobic003G200501 Sobic010G074980 Sobic010G074980 Sobic007G093400--Sobic010G074980
Octagon: transcription factors


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