Gene annotation
Transcriptome id Sobic.002G210200.1
Synonym H2B, HTB9, Sb02g025410
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
UniProt C5XDK0
Pfam PF00125
Panther DB PTHR23428
NCBI CDD KOG1744; Histone H2B
KEGG Orthology K11252; histone H2B
Gene Ontology GO:0003677; DNA binding GO:0000786nucleosome


Orthologs (automatic annotation)
TAIR AT3G45980 : Histone superfamily protein
RAP-DB (Rice) LOC_Os03g17084.1 : Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a026935 , Zm00025a023416 , Zm00025a056569 , Zm00025a047105 , Zm00025a039690 , Zm00025a032481 , Zm00025a005748 , Zm00025a028433 , Zm00025a052736 , Zm00025a013950 , Zm00025a015351 , Zm00025a030742 , Zm00025a038415 , Zm00025a053512
Brachypodium KQK02276 , KQK13244 , KQK10503 , KQK06664 , KQK02281 , PNT74146 , KQK05897 , KQK19386 , PNT76946 , KQK01215 , KQK06658 , KQK22306 , KQK20688
Barley HORVU1Hr1G078480.8 , HORVU1Hr1G078480.1 , HORVU1Hr1G078480.2 , HORVU1Hr1G078480.4 , HORVU1Hr1G078480.6 , HORVU1Hr1G078480.7 , HORVU1Hr1G091370.1 , HORVU0Hr1G001420.1 , HORVU3Hr1G086610.2 , HORVU3Hr1G086610.3 , HORVU3Hr1G086610.1 , HORVU3Hr1G086610.4 , HORVU7Hr1G110310.1 , HORVU3Hr1G086620.1 , HORVU1Hr1G078480.3 , HORVU3Hr1G013530.1 , HORVU3Hr1G013530.2 , HORVU6Hr1G015760.2 , HORVU6Hr1G015760.1 , HORVU6Hr1G008470.1 , HORVU6Hr1G008470.3 , HORVU6Hr1G008470.2 , HORVU3Hr1G015810.1 , HORVU3Hr1G015810.2 , HORVU3Hr1G015810.3 , HORVU7Hr1G110130.2 , HORVU7Hr1G110130.1 , HORVU1Hr1G056530.1 , HORVU1Hr1G056530.2 , HORVU1Hr1G056530.3 , HORVU1Hr1G056530.4 , HORVU4Hr1G070240.4 , HORVU4Hr1G070240.3 , HORVU4Hr1G070240.2 , HORVU4Hr1G070240.1 , HORVU6Hr1G006110.1 , HORVU4Hr1G009040.1 , HORVU4Hr1G009040.3 , HORVU4Hr1G009040.2 , HORVU7Hr1G110330.1 , HORVU7Hr1G110170.2 , HORVU7Hr1G110170.1 , HORVU7Hr1G110330.2 , HORVU4Hr1G073130.4 , HORVU6Hr1G083110.1 , HORVU4Hr1G073130.1 , HORVU4Hr1G073130.2 , HORVU4Hr1G073130.3 , HORVU1Hr1G078530.3 , HORVU1Hr1G078530.4 , HORVU1Hr1G078530.5 , HORVU1Hr1G078530.6 , HORVU1Hr1G078530.7 , HORVU1Hr1G058500.3 , HORVU3Hr1G013680.2 , HORVU3Hr1G013680.1 , HORVU2Hr1G077630.1 , HORVU2Hr1G077630.3 , HORVU2Hr1G077630.2 , HORVU3Hr1G034060.1 , HORVU3Hr1G034060.2 , HORVU1Hr1G049920.1 , HORVU1Hr1G066130.1 , HORVU6Hr1G015790.2 , HORVU6Hr1G015790.3 , HORVU6Hr1G015790.1 , HORVU1Hr1G058500.2 , HORVU1Hr1G058500.1 , HORVU7Hr1G110290.1 , HORVU1Hr1G085540.1 , HORVU5Hr1G094500.3 , HORVU0Hr1G006420.1 , HORVU1Hr1G072190.1 , HORVU1Hr1G072190.2 , HORVU1Hr1G072190.3 , HORVU1Hr1G072190.4 , HORVU1Hr1G072190.5 , HORVU5Hr1G094500.2 , HORVU5Hr1G094500.1 , HORVU6Hr1G087190.1 , HORVU6Hr1G008320.1 , HORVU6Hr1G008320.2 , HORVU3Hr1G086580.1 , HORVU7Hr1G110190.1 , HORVU7Hr1G110090.1 , HORVU7Hr1G110090.2 , HORVU7Hr1G110190.2 , HORVU6Hr1G005950.1 , HORVU6Hr1G005950.3 , HORVU6Hr1G005950.2 , HORVU1Hr1G078530.10
Wheat TraesCSU02G169400 , TraesCS4D02G205300 , TraesCSU02G170900 , TraesCSU02G170400 , TraesCS2A02G312400 , TraesCSU02G169700 , TraesCS1A02G190400 , TraesCS7B02G394800 , TraesCS7B02G394500 , TraesCSU02G170600 , TraesCS6B02G055300 , TraesCSU02G169300 , TraesCSU02G169800 , TraesCS3A02G357600 , TraesCSU02G170500 , TraesCSU02G170700 , TraesCS7B02G394400 , TraesCS3A02G075800 , TraesCSU02G169900 , TraesCS6B02G055500 , TraesCS4A02G030500 , TraesCSU02G171100 , TraesCS1D02G232900 , TraesCSU02G171000 , TraesCSU02G169500
Populus PNS96561 , PNT22397


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cDNA sequences
Sobic.002G210200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G200501 - K11252: histone H2B
2 Sobic.003G067500 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
3 Sobic.002G320900 patatin-like phospholipase family protein, expressed -
4 Sobic.002G284901 - -
5 Sobic.001G525000 polygalacturonase, putative, expressed -
6 Sobic.003G120400 expressed protein -
7 Sobic.007G093400 - -
8 Sobic.003G067300 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
9 Sobic.007G221800 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
10 Sobic.003G367401 - -
11 Sobic.002G430200 PSF2 - Putative GINS complex subunit, expressed K10733: GINS2, GINS complex subunit 2
12 Sobic.010G201000 - -
13 Sobic.007G149600 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
14 Sobic.001G130900 expressed protein -
15 Sobic.003G065001 - -
16 Sobic.006G065700 DUF677 domain containing protein, putative, expressed -
17 Sobic.002G387100 X8 domain containing protein, expressed -
18 Sobic.004G265400 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
19 Sobic.010G074980 - -
20 Sobic.003G350100 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B


Gene co-expression network
sample Sobic002G210200 Sobic002G210200 Sobic003G200501 Sobic003G200501 Sobic002G210200--Sobic003G200501 Sobic003G067500 Sobic003G067500 Sobic002G210200--Sobic003G067500 Sobic002G320900 Sobic002G320900 Sobic002G210200--Sobic002G320900 Sobic002G284901 Sobic002G284901 Sobic002G210200--Sobic002G284901 Sobic001G525000 Sobic001G525000 Sobic002G210200--Sobic001G525000 Sobic003G120400 Sobic003G120400 Sobic002G210200--Sobic003G120400 Sobic007G093400 Sobic007G093400 Sobic002G210200--Sobic007G093400 Sobic003G067300 Sobic003G067300 Sobic002G210200--Sobic003G067300 Sobic007G221800 Sobic007G221800 Sobic002G210200--Sobic007G221800 Sobic003G200501--Sobic002G210200 Sobic003G200501--Sobic003G067500 Sobic003G200501--Sobic002G284901 Sobic003G200501--Sobic002G320900 Sobic003G200501--Sobic003G120400 Sobic003G200501--Sobic001G525000 Sobic003G200501--Sobic003G067300 Sobic003G200501--Sobic007G221800 Sobic003G200501--Sobic007G093400 Sobic003G067500--Sobic003G200501 Sobic003G067500--Sobic002G210200 Sobic003G067500--Sobic003G067300 Sobic003G067500--Sobic002G284901 Sobic003G067500--Sobic007G221800 Sobic003G067500--Sobic002G320900 Sobic004G265400 Sobic004G265400 Sobic003G067500--Sobic004G265400 Sobic003G067500--Sobic001G525000 Sobic003G067500--Sobic003G120400 Sobic002G320900--Sobic002G284901 Sobic002G320900--Sobic001G525000 Sobic002G320900--Sobic003G120400 Sobic002G320900--Sobic002G210200 Sobic002G320900--Sobic003G200501 Sobic002G320900--Sobic007G093400 Sobic006G065700 Sobic006G065700 Sobic002G320900--Sobic006G065700 Sobic001G460800 Sobic001G460800 Sobic002G320900--Sobic001G460800 Sobic003G367401 Sobic003G367401 Sobic002G320900--Sobic003G367401 Sobic002G284901--Sobic002G320900 Sobic002G284901--Sobic003G200501 Sobic002G284901--Sobic002G210200 Sobic002G284901--Sobic003G120400 Sobic002G284901--Sobic001G525000 Sobic002G284901--Sobic007G093400 Sobic002G284901--Sobic006G065700 Sobic002G284901--Sobic003G067500 Sobic002G430200 Sobic002G430200 Sobic002G284901--Sobic002G430200 Sobic001G525000--Sobic003G120400 Sobic001G525000--Sobic002G320900 Sobic001G525000--Sobic002G430200 Sobic001G525000--Sobic002G284901 Sobic001G525000--Sobic003G367401 Sobic002G387100 Sobic002G387100 Sobic001G525000--Sobic002G387100 Sobic001G525000--Sobic002G210200 Sobic001G525000--Sobic003G200501 Sobic001G525000--Sobic007G093400 Sobic003G120400--Sobic001G525000 Sobic003G120400--Sobic002G320900 Sobic003G120400--Sobic007G093400 Sobic003G120400--Sobic002G284901 Sobic003G120400--Sobic003G200501 Sobic003G120400--Sobic002G210200 Sobic001G130900 Sobic001G130900 Sobic003G120400--Sobic001G130900 Sobic003G120400--Sobic002G430200 Sobic003G120400--Sobic003G367401 Sobic007G093400--Sobic003G120400 Sobic007G093400--Sobic002G320900 Sobic007G093400--Sobic001G525000 Sobic010G201000 Sobic010G201000 Sobic007G093400--Sobic010G201000 Sobic007G093400--Sobic003G367401 Sobic003G065001 Sobic003G065001 Sobic007G093400--Sobic003G065001 Sobic007G093400--Sobic002G210200 Sobic007G093400--Sobic003G200501 Sobic010G074980 Sobic010G074980 Sobic007G093400--Sobic010G074980 Sobic003G350100 Sobic003G350100 Sobic003G067300--Sobic003G350100 Sobic003G067300--Sobic003G200501 Sobic003G067300--Sobic003G067500 Sobic003G067300--Sobic002G210200 Sobic007G149600 Sobic007G149600 Sobic003G067300--Sobic007G149600 Sobic003G067300--Sobic002G387100 Sobic003G067300--Sobic002G430200 Sobic003G067300--Sobic003G367401 Sobic003G067300--Sobic004G265400 Sobic007G221800--Sobic007G149600 Sobic007G221800--Sobic003G200501 Sobic007G221800--Sobic002G210200 Sobic007G221800--Sobic004G265400 Sobic007G221800--Sobic003G067500 Sobic007G221800--Sobic002G284901 Sobic007G221800--Sobic002G320900 Sobic007G221800--Sobic003G067300 Sobic007G221800--Sobic007G093400
Octagon: transcription factors


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