Gene annotation
Transcriptome id Sobic.002G430200.2
Synonym PSF2, Sb02g043990
Functional annotation PSF2 - Putative GINS complex subunit, expressed
UniProt A0A1W0W847
Pfam PF05916
Panther DB PTHR12772
NCBI CDD KOG4071; Uncharacterized conserved protein
KEGG Orthology K10733; GINS2, GINS complex subunit 2
Gene Ontology GO:0006260; DNA replication GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT3G12530 : PSF2
RAP-DB (Rice) LOC_Os01g14610.1 : PSF2 - Putative GINS complex subunit, expressed
MaizeGDB (Corn) Zm00025a049269
Brachypodium KQK11778
Barley HORVU1Hr1G084860.5 , HORVU1Hr1G084860.4 , HORVU1Hr1G084860.7 , HORVU1Hr1G084860.6 , HORVU1Hr1G084860.1 , HORVU1Hr1G084860.2
Wheat TraesCS1B02G411000 , TraesCS1D02G392400
Populus -


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cDNA sequences
Sobic.002G430200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G387100 X8 domain containing protein, expressed -
2 Sobic.007G122300 - -
3 Sobic.003G099500 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
4 Sobic.003G367401 - -
5 Sobic.001G525000 polygalacturonase, putative, expressed -
6 Sobic.004G239000 - -
7 Sobic.003G120400 expressed protein -
8 Sobic.010G201000 - -
9 Sobic.002G284800 expressed protein -
10 Sobic.003G368150 - -
11 Sobic.001G016900 RNA-binding protein Luc7-like, putative, expressed -
12 Sobic.001G441800 hydroxyproline-rich glycoprotein family protein, putative, expressed -
13 Sobic.008G131800 zinc knuckle family protein, expressed -
14 Sobic.003G200501 - K11252: histone H2B
15 Sobic.003G067300 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
16 Sobic.002G210200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
17 Sobic.007G093400 - -
18 Sobic.001G255700 - -
19 Sobic.002G284901 - -
20 Sobic.002G320900 patatin-like phospholipase family protein, expressed -


Gene co-expression network
sample Sobic002G430200 Sobic002G430200 Sobic002G387100 Sobic002G387100 Sobic002G430200--Sobic002G387100 Sobic007G122300 Sobic007G122300 Sobic002G430200--Sobic007G122300 Sobic003G099500 Sobic003G099500 Sobic002G430200--Sobic003G099500 Sobic003G367401 Sobic003G367401 Sobic002G430200--Sobic003G367401 Sobic001G525000 Sobic001G525000 Sobic002G430200--Sobic001G525000 Sobic004G239000 Sobic004G239000 Sobic002G430200--Sobic004G239000 Sobic003G120400 Sobic003G120400 Sobic002G430200--Sobic003G120400 Sobic010G201000 Sobic010G201000 Sobic002G430200--Sobic010G201000 Sobic002G284800 Sobic002G284800 Sobic002G430200--Sobic002G284800 Sobic002G387100--Sobic002G430200 Sobic002G387100--Sobic007G122300 Sobic002G387100--Sobic003G099500 Sobic002G387100--Sobic004G239000 Sobic002G387100--Sobic001G525000 Sobic002G387100--Sobic003G367401 Sobic002G387100--Sobic002G284800 Sobic003G368150 Sobic003G368150 Sobic002G387100--Sobic003G368150 Sobic002G387100--Sobic003G120400 Sobic007G122300--Sobic002G430200 Sobic007G122300--Sobic002G387100 Sobic007G122300--Sobic003G368150 Sobic007G122300--Sobic004G239000 Sobic007G122300--Sobic003G099500 Sobic007G122300--Sobic003G367401 Sobic008G131800 Sobic008G131800 Sobic007G122300--Sobic008G131800 Sobic007G122300--Sobic002G284800 Sobic001G441800 Sobic001G441800 Sobic007G122300--Sobic001G441800 Sobic003G099500--Sobic004G239000 Sobic003G099500--Sobic002G387100 Sobic003G099500--Sobic002G430200 Sobic001G016900 Sobic001G016900 Sobic003G099500--Sobic001G016900 Sobic003G099500--Sobic007G122300 Sobic003G099500--Sobic002G284800 Sobic003G099500--Sobic008G131800 Sobic003G099500--Sobic003G368150 Sobic007G111600 Sobic007G111600 Sobic003G099500--Sobic007G111600 Sobic003G367401--Sobic002G430200 Sobic003G367401--Sobic010G201000 Sobic003G367401--Sobic001G525000 Sobic003G367401--Sobic002G387100 Sobic003G367401--Sobic007G122300 Sobic007G093400 Sobic007G093400 Sobic003G367401--Sobic007G093400 Sobic003G367401--Sobic004G239000 Sobic003G367401--Sobic001G016900 Sobic003G367401--Sobic003G120400 Sobic001G525000--Sobic003G120400 Sobic002G320900 Sobic002G320900 Sobic001G525000--Sobic002G320900 Sobic001G525000--Sobic002G430200 Sobic002G284901 Sobic002G284901 Sobic001G525000--Sobic002G284901 Sobic001G525000--Sobic003G367401 Sobic001G525000--Sobic002G387100 Sobic002G210200 Sobic002G210200 Sobic001G525000--Sobic002G210200 Sobic003G200501 Sobic003G200501 Sobic001G525000--Sobic003G200501 Sobic001G525000--Sobic007G093400 Sobic004G239000--Sobic003G099500 Sobic004G239000--Sobic008G131800 Sobic004G239000--Sobic002G284800 Sobic004G239000--Sobic002G430200 Sobic004G239000--Sobic001G016900 Sobic004G239000--Sobic003G368150 Sobic001G255700 Sobic001G255700 Sobic004G239000--Sobic001G255700 Sobic004G239000--Sobic002G387100 Sobic004G239000--Sobic007G122300 Sobic003G120400--Sobic001G525000 Sobic003G120400--Sobic002G320900 Sobic003G120400--Sobic007G093400 Sobic003G120400--Sobic002G284901 Sobic003G120400--Sobic003G200501 Sobic003G120400--Sobic002G210200 Sobic001G130900 Sobic001G130900 Sobic003G120400--Sobic001G130900 Sobic003G120400--Sobic002G430200 Sobic003G120400--Sobic003G367401 Sobic010G201000--Sobic003G367401 Sobic010G201000--Sobic007G093400 Sobic010G201000--Sobic002G430200 Sobic010G074980 Sobic010G074980 Sobic010G201000--Sobic010G074980 Sobic010G201000--Sobic001G525000 Sobic010G201000--Sobic002G387100 Sobic010G201000--Sobic003G120400 Sobic010G201000--Sobic001G016900 Sobic010G201000--Sobic003G099500 Sobic002G284800--Sobic003G368150 Sobic002G284800--Sobic001G255700 Sobic002G284800--Sobic004G239000 Sobic002G284800--Sobic008G131800 Sobic008G133100 Sobic008G133100 Sobic002G284800--Sobic008G133100 Sobic002G284800--Sobic003G099500 Sobic002G284800--Sobic002G387100 Sobic002G284800--Sobic007G122300 Sobic003G105300 Sobic003G105300 Sobic002G284800--Sobic003G105300
Octagon: transcription factors


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