Gene annotation
Transcriptome id Sobic.004G128600.1
Synonym PCAP1, Sb04g011100, ATPCAP1
Functional annotation salt stress root protein RS1, putative, expressed
UniProt C5Y055
Pfam PF05558
Panther DB PTHR38522 PTHR38522:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G20260 : plasma-membrane associated cation-binding protein 1
RAP-DB (Rice) LOC_Os02g18410.1 : salt stress root protein RS1, putative, expressed
MaizeGDB (Corn) Zm00025a019723
Brachypodium KQJ94436
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G128600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G197000 heavy-metal-associated domain-containing protein, putative, expressed -
2 Sobic.002G425900 expressed protein -
3 Sobic.010G224800 patellin-5, putative, expressed -
4 Sobic.010G114400 expressed protein -
5 Sobic.009G154000 ATOFP18/OFP18, putative, expressed -
6 Sobic.007G001300 "cell wall modification, deposition of casparian strips, endodermis, transmembrane"(PubMedID : 24920445)@membrane associated DUF588 domain containing protein, putative, expressed -
7 Sobic.003G201400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hsp20/alpha crystallin family protein, putative, expressed -
8 Sobic.001G200500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heavy metal-associated domain containing protein, expressed -
9 Sobic.005G102100 chalcone synthase, putative, expressed -
10 Sobic.008G133100 OsWAK13 - OsWAK receptor-like protein kinase, expressed -
11 Sobic.003G109400 - -
12 Sobic.008G061000 expressed protein -
13 Sobic.009G031100 cycloeucalenol cycloisomerase, putative, expressed K08246: cycloeucalenol cycloisomerase
14 Sobic.002G156300 - -
15 Sobic.K044200 - -
16 Sobic.004G329100 gibberellin 2-beta-dioxygenase 7, putative, expressed -
17 Sobic.001G407000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ proteins of unknown function domain containing protein, putative, expressed -
18 Sobic.004G330400 expressed protein -
19 Sobic.004G197300 - -
20 Sobic.009G163500 - -


Gene co-expression network
sample Sobic004G128600 Sobic004G128600 Sobic006G197000 Sobic006G197000 Sobic004G128600--Sobic006G197000 Sobic002G425900 Sobic002G425900 Sobic004G128600--Sobic002G425900 Sobic010G224800 Sobic010G224800 Sobic004G128600--Sobic010G224800 Sobic010G114400 Sobic010G114400 Sobic004G128600--Sobic010G114400 Sobic009G154000 Sobic009G154000 Sobic004G128600--Sobic009G154000 Sobic007G001300 Sobic007G001300 Sobic004G128600--Sobic007G001300 Sobic003G201400 Sobic003G201400 Sobic004G128600--Sobic003G201400 Sobic001G200500 Sobic001G200500 Sobic004G128600--Sobic001G200500 Sobic005G102100 Sobic005G102100 Sobic004G128600--Sobic005G102100 Sobic006G197000--Sobic004G128600 Sobic006G197000--Sobic003G201400 Sobic006G197000--Sobic010G224800 Sobic006G197000--Sobic010G114400 Sobic006G197000--Sobic007G001300 Sobic002G156300 Sobic002G156300 Sobic006G197000--Sobic002G156300 Sobic009G031100 Sobic009G031100 Sobic006G197000--Sobic009G031100 Sobic003G109400 Sobic003G109400 Sobic006G197000--Sobic003G109400 Sobic006G197000--Sobic001G200500 Sobic002G425900--Sobic010G224800 Sobic002G284800 Sobic002G284800 Sobic002G425900--Sobic002G284800 Sobic001G255700 Sobic001G255700 Sobic002G425900--Sobic001G255700 Sobic003G105300 Sobic003G105300 Sobic002G425900--Sobic003G105300 Sobic002G425900--Sobic010G114400 Sobic003G368150 Sobic003G368150 Sobic002G425900--Sobic003G368150 Sobic008G133100 Sobic008G133100 Sobic002G425900--Sobic008G133100 Sobic002G425900--Sobic003G109400 Sobic002G425900--Sobic007G001300 Sobic010G224800--Sobic010G114400 Sobic010G224800--Sobic007G001300 Sobic010G224800--Sobic003G109400 Sobic010G224800--Sobic002G156300 Sobic010G224800--Sobic009G031100 Sobic010G224800--Sobic002G425900 Sobic010G224800--Sobic003G105300 Sobic004G197300 Sobic004G197300 Sobic010G224800--Sobic004G197300 Sobic009G163500 Sobic009G163500 Sobic010G224800--Sobic009G163500 Sobic010G114400--Sobic010G224800 Sobic010G114400--Sobic002G156300 Sobic010G114400--Sobic007G001300 Sobic010G114400--Sobic003G109400 Sobic010G114400--Sobic009G031100 Sobic010G114400--Sobic002G425900 Sobic010G114400--Sobic004G197300 Sobic010G114400--Sobic009G163500 Sobic010G114400--Sobic003G105300 SobicK044200 SobicK044200 Sobic009G154000--SobicK044200 Sobic009G154000--Sobic002G425900 Sobic009G154000--Sobic004G128600 Sobic009G154000--Sobic010G114400 Sobic004G330400 Sobic004G330400 Sobic009G154000--Sobic004G330400 Sobic009G154000--Sobic010G224800 Sobic009G154000--Sobic002G284800 Sobic009G154000--Sobic001G255700 Sobic009G154000--Sobic003G368150 Sobic007G001300--Sobic002G156300 Sobic007G001300--Sobic010G224800 Sobic007G001300--Sobic010G114400 Sobic007G001300--Sobic003G109400 Sobic007G001300--Sobic009G031100 Sobic007G001300--Sobic004G197300 Sobic007G001300--Sobic003G105300 Sobic008G020300 Sobic008G020300 Sobic007G001300--Sobic008G020300 Sobic010G179150 Sobic010G179150 Sobic007G001300--Sobic010G179150 Sobic003G201400--Sobic010G114400 Sobic003G201400--Sobic002G156300 Sobic003G201400--Sobic010G224800 Sobic003G201400--Sobic009G031100 Sobic003G201400--Sobic003G109400 Sobic003G201400--Sobic006G197000 Sobic003G201400--Sobic007G001300 Sobic006G172651 Sobic006G172651 Sobic003G201400--Sobic006G172651 Sobic003G081400 Sobic003G081400 Sobic003G201400--Sobic003G081400 Sobic001G200500--Sobic008G133100 Sobic001G200500--Sobic010G224800 Sobic001G200500--Sobic007G001300 Sobic001G200500--Sobic009G031100 Sobic001G200500--Sobic001G255700 Sobic001G200500--Sobic002G284800 Sobic001G200500--Sobic003G109400 Sobic001G200500--Sobic002G156300 Sobic001G200500--Sobic003G368150 Sobic005G102100--Sobic008G133100 Sobic005G102100--Sobic004G330400 Sobic005G102100--Sobic002G284800 Sobic005G102100--Sobic002G425900 Sobic005G102100--Sobic001G255700 Sobic005G102100--Sobic001G200500 Sobic005G102100--Sobic010G224800 Sobic005G102100--Sobic003G368150 Sobic005G102100--Sobic007G001300
Octagon: transcription factors


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