Gene annotation
Transcriptome id Sobic.003G201400.3,Sobic.003G201400.2
Synonym RTM2, Sb03g026340
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
hsp20/alpha crystallin family protein, putative, expressed
UniProt C5XPG7
Pfam PF00011
Panther DB PTHR11527 PTHR11527:SF129
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G20970 : HSP20-like chaperones superfamily protein
RAP-DB (Rice) LOC_Os01g40550.1 : hsp20/alpha crystallin family protein, putative, expressed
MaizeGDB (Corn) Zm00025a028525 , Zm00025a038420
Brachypodium -
Barley HORVU3Hr1G051000.4 , HORVU3Hr1G051000.3 , HORVU3Hr1G051000.2 , HORVU3Hr1G051000.1
Wheat TraesCS3D02G213300 , TraesCS3A02G210500 , TraesCS3B02G241100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G114400 expressed protein -
2 Sobic.002G156300 - -
3 Sobic.010G224800 patellin-5, putative, expressed -
4 Sobic.009G031100 cycloeucalenol cycloisomerase, putative, expressed K08246: cycloeucalenol cycloisomerase
5 Sobic.003G109400 - -
6 Sobic.006G197000 heavy-metal-associated domain-containing protein, putative, expressed -
7 Sobic.007G001300 "cell wall modification, deposition of casparian strips, endodermis, transmembrane"(PubMedID : 24920445)@membrane associated DUF588 domain containing protein, putative, expressed -
8 Sobic.006G172651 - -
9 Sobic.003G081400 Ser/Thr protein kinase, putative, expressed -
10 Sobic.001G261440 - -
11 Sobic.002G206200 monogalactosyldiacylglycerol synthase, putative, expressed K03715: 1,2-diacylglycerol 3-beta-galactosyltransferase
12 Sobic.001G145300 - -
13 Sobic.008G031600 expressed protein -
14 Sobic.001G200500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heavy metal-associated domain containing protein, expressed -
15 Sobic.004G128600 salt stress root protein RS1, putative, expressed -
16 Sobic.002G425900 expressed protein -
17 Sobic.010G122533 - -
18 Sobic.009G127600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
19 Sobic.010G045300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.005G022600 PME/invertase inhibitor, putative, expressed -


Gene co-expression network
sample Sobic003G201400 Sobic003G201400 Sobic010G114400 Sobic010G114400 Sobic003G201400--Sobic010G114400 Sobic002G156300 Sobic002G156300 Sobic003G201400--Sobic002G156300 Sobic010G224800 Sobic010G224800 Sobic003G201400--Sobic010G224800 Sobic009G031100 Sobic009G031100 Sobic003G201400--Sobic009G031100 Sobic003G109400 Sobic003G109400 Sobic003G201400--Sobic003G109400 Sobic006G197000 Sobic006G197000 Sobic003G201400--Sobic006G197000 Sobic007G001300 Sobic007G001300 Sobic003G201400--Sobic007G001300 Sobic006G172651 Sobic006G172651 Sobic003G201400--Sobic006G172651 Sobic003G081400 Sobic003G081400 Sobic003G201400--Sobic003G081400 Sobic010G114400--Sobic010G224800 Sobic010G114400--Sobic002G156300 Sobic010G114400--Sobic007G001300 Sobic010G114400--Sobic003G109400 Sobic010G114400--Sobic009G031100 Sobic002G425900 Sobic002G425900 Sobic010G114400--Sobic002G425900 Sobic004G197300 Sobic004G197300 Sobic010G114400--Sobic004G197300 Sobic009G163500 Sobic009G163500 Sobic010G114400--Sobic009G163500 Sobic003G105300 Sobic003G105300 Sobic010G114400--Sobic003G105300 Sobic002G156300--Sobic007G001300 Sobic002G156300--Sobic003G109400 Sobic002G156300--Sobic010G114400 Sobic002G156300--Sobic010G224800 Sobic002G156300--Sobic009G031100 Sobic002G156300--Sobic003G105300 Sobic002G156300--Sobic004G197300 Sobic008G020300 Sobic008G020300 Sobic002G156300--Sobic008G020300 Sobic002G156300--Sobic009G163500 Sobic010G224800--Sobic010G114400 Sobic010G224800--Sobic007G001300 Sobic010G224800--Sobic003G109400 Sobic010G224800--Sobic002G156300 Sobic010G224800--Sobic009G031100 Sobic010G224800--Sobic002G425900 Sobic010G224800--Sobic003G105300 Sobic010G224800--Sobic004G197300 Sobic010G224800--Sobic009G163500 Sobic009G031100--Sobic002G156300 Sobic009G031100--Sobic007G001300 Sobic009G031100--Sobic010G224800 Sobic009G031100--Sobic010G114400 Sobic009G031100--Sobic003G109400 Sobic010G114500 Sobic010G114500 Sobic009G031100--Sobic010G114500 Sobic009G031100--Sobic003G105300 Sobic002G206200 Sobic002G206200 Sobic009G031100--Sobic002G206200 Sobic009G031100--Sobic004G197300 Sobic003G109400--Sobic002G156300 Sobic003G109400--Sobic010G224800 Sobic003G109400--Sobic007G001300 Sobic003G109400--Sobic010G114400 Sobic003G109400--Sobic009G163500 Sobic003G109400--Sobic009G031100 Sobic003G109400--Sobic008G020300 Sobic003G109400--Sobic002G206200 Sobic003G109400--Sobic004G197300 Sobic004G128600 Sobic004G128600 Sobic006G197000--Sobic004G128600 Sobic006G197000--Sobic003G201400 Sobic006G197000--Sobic010G224800 Sobic006G197000--Sobic010G114400 Sobic006G197000--Sobic007G001300 Sobic006G197000--Sobic002G156300 Sobic006G197000--Sobic009G031100 Sobic006G197000--Sobic003G109400 Sobic001G200500 Sobic001G200500 Sobic006G197000--Sobic001G200500 Sobic007G001300--Sobic002G156300 Sobic007G001300--Sobic010G224800 Sobic007G001300--Sobic010G114400 Sobic007G001300--Sobic003G109400 Sobic007G001300--Sobic009G031100 Sobic007G001300--Sobic004G197300 Sobic007G001300--Sobic003G105300 Sobic007G001300--Sobic008G020300 Sobic010G179150 Sobic010G179150 Sobic007G001300--Sobic010G179150 Sobic001G261440 Sobic001G261440 Sobic006G172651--Sobic001G261440 Sobic006G172651--Sobic003G109400 Sobic006G172651--Sobic002G206200 Sobic001G145300 Sobic001G145300 Sobic006G172651--Sobic001G145300 Sobic006G172651--Sobic002G156300 Sobic003G136700 Sobic003G136700 Sobic006G172651--Sobic003G136700 Sobic006G172651--Sobic010G114400 Sobic006G172651--Sobic010G224800 Sobic006G172651--Sobic007G001300 Sobic009G039400 Sobic009G039400 Sobic003G081400--Sobic009G039400 Sobic003G081400--Sobic003G201400 Sobic006G167200 Sobic006G167200 Sobic003G081400--Sobic006G167200 Sobic010G045300 Sobic010G045300 Sobic003G081400--Sobic010G045300 Sobic010G208300 Sobic010G208300 Sobic003G081400--Sobic010G208300 Sobic005G022600 Sobic005G022600 Sobic003G081400--Sobic005G022600 Sobic010G029200 Sobic010G029200 Sobic003G081400--Sobic010G029200 Sobic010G068300 Sobic010G068300 Sobic003G081400--Sobic010G068300 Sobic008G031600 Sobic008G031600 Sobic003G081400--Sobic008G031600
Octagon: transcription factors


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