Gene annotation
Transcriptome id Sobic.002G056300.1
Synonym Sb02g004730
Functional annotation AT hook-containing DNA-binding protein, putative, expressed
UniProt C5XB54
Pfam PF00538
Panther DB PTHR11467 PTHR11467:SF47
NCBI CDD KOG4012; Histone H1
KEGG Orthology K11275; histone H1/5
Gene Ontology GO:0006334; nucleosome assembly GO:0005634nucleus GO:0003677DNA binding GO:0000786nucleosome


Orthologs (automatic annotation)
TAIR AT2G30620 : winged-helix DNA-binding transcription factor family protein
RAP-DB (Rice) LOC_Os07g08710.1 : AT hook-containing DNA-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a045205
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G056300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G059200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
2 Sobic.002G403400 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
3 Sobic.003G350100 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
4 Sobic.003G067300 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
5 Sobic.004G265400 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
6 Sobic.001G416800 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
7 Sobic.008G133100 OsWAK13 - OsWAK receptor-like protein kinase, expressed -
8 Sobic.007G149600 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
9 Sobic.001G200500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heavy metal-associated domain containing protein, expressed -
10 Sobic.001G441800 hydroxyproline-rich glycoprotein family protein, putative, expressed -
11 Sobic.004G227000 expressed protein -
12 Sobic.004G230900 RNA recognition motif containing protein, putative, expressed -
13 Sobic.001G193400 DUF538 domain containing protein, putative, expressed -
14 Sobic.004G329100 gibberellin 2-beta-dioxygenase 7, putative, expressed -
15 Sobic.003G092200 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
16 Sobic.002G425900 expressed protein -
17 Sobic.004G128600 salt stress root protein RS1, putative, expressed -
18 Sobic.005G102100 chalcone synthase, putative, expressed -
19 Sobic.002G092700 harpin-induced protein 1 domain containing protein, expressed -
20 Sobic.003G067500 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B


Gene co-expression network
sample Sobic002G056300 Sobic002G056300 Sobic002G059200 Sobic002G059200 Sobic002G056300--Sobic002G059200 Sobic002G403400 Sobic002G403400 Sobic002G056300--Sobic002G403400 Sobic003G350100 Sobic003G350100 Sobic002G056300--Sobic003G350100 Sobic003G067300 Sobic003G067300 Sobic002G056300--Sobic003G067300 Sobic004G265400 Sobic004G265400 Sobic002G056300--Sobic004G265400 Sobic001G416800 Sobic001G416800 Sobic002G056300--Sobic001G416800 Sobic008G133100 Sobic008G133100 Sobic002G056300--Sobic008G133100 Sobic007G149600 Sobic007G149600 Sobic002G056300--Sobic007G149600 Sobic001G200500 Sobic001G200500 Sobic002G056300--Sobic001G200500 Sobic002G059200--Sobic002G403400 Sobic002G059200--Sobic003G350100 Sobic002G059200--Sobic004G265400 Sobic002G059200--Sobic007G149600 Sobic001G193400 Sobic001G193400 Sobic002G059200--Sobic001G193400 Sobic002G059200--Sobic003G067300 Sobic002G059200--Sobic002G056300 Sobic007G221800 Sobic007G221800 Sobic002G059200--Sobic007G221800 Sobic003G067500 Sobic003G067500 Sobic002G059200--Sobic003G067500 Sobic002G403400--Sobic003G350100 Sobic002G403400--Sobic002G059200 Sobic002G403400--Sobic004G265400 Sobic002G403400--Sobic003G067300 Sobic002G403400--Sobic007G149600 Sobic002G403400--Sobic001G193400 Sobic002G403400--Sobic003G067500 Sobic002G403400--Sobic007G221800 Sobic003G200501 Sobic003G200501 Sobic002G403400--Sobic003G200501 Sobic003G350100--Sobic003G067300 Sobic003G350100--Sobic004G265400 Sobic003G350100--Sobic007G149600 Sobic003G350100--Sobic001G193400 Sobic003G350100--Sobic003G067500 Sobic003G350100--Sobic003G200501 Sobic002G210200 Sobic002G210200 Sobic003G350100--Sobic002G210200 Sobic002G387100 Sobic002G387100 Sobic003G350100--Sobic002G387100 Sobic003G350100--Sobic008G133100 Sobic003G067300--Sobic003G350100 Sobic003G067300--Sobic003G200501 Sobic003G067300--Sobic003G067500 Sobic003G067300--Sobic002G210200 Sobic003G067300--Sobic007G149600 Sobic003G067300--Sobic002G387100 Sobic002G430200 Sobic002G430200 Sobic003G067300--Sobic002G430200 Sobic003G367401 Sobic003G367401 Sobic003G067300--Sobic003G367401 Sobic003G067300--Sobic004G265400 Sobic004G265400--Sobic007G149600 Sobic004G265400--Sobic007G221800 Sobic004G265400--Sobic003G350100 Sobic004G265400--Sobic003G067300 Sobic004G265400--Sobic003G067500 Sobic004G265400--Sobic003G200501 Sobic004G265400--Sobic002G210200 Sobic004G265400--Sobic001G193400 Sobic004G265400--Sobic002G059200 Sobic003G127600 Sobic003G127600 Sobic001G416800--Sobic003G127600 Sobic001G416900 Sobic001G416900 Sobic001G416800--Sobic001G416900 Sobic001G416800--Sobic002G056300 Sobic001G416800--Sobic002G059200 Sobic001G416800--Sobic002G403400 Sobic009G123000 Sobic009G123000 Sobic001G416800--Sobic009G123000 Sobic001G416800--Sobic003G350100 Sobic008G061000 Sobic008G061000 Sobic001G416800--Sobic008G061000 Sobic004G227000 Sobic004G227000 Sobic001G416800--Sobic004G227000 Sobic002G284800 Sobic002G284800 Sobic008G133100--Sobic002G284800 Sobic001G255700 Sobic001G255700 Sobic008G133100--Sobic001G255700 Sobic003G368150 Sobic003G368150 Sobic008G133100--Sobic003G368150 Sobic001G441800 Sobic001G441800 Sobic008G133100--Sobic001G441800 Sobic004G239000 Sobic004G239000 Sobic008G133100--Sobic004G239000 Sobic008G131800 Sobic008G131800 Sobic008G133100--Sobic008G131800 Sobic003G105300 Sobic003G105300 Sobic008G133100--Sobic003G105300 Sobic004G197300 Sobic004G197300 Sobic008G133100--Sobic004G197300 Sobic008G133100--Sobic001G200500 Sobic007G149600--Sobic004G265400 Sobic007G149600--Sobic007G221800 Sobic007G149600--Sobic003G067300 Sobic007G149600--Sobic003G200501 Sobic007G149600--Sobic002G210200 Sobic007G149600--Sobic003G350100 Sobic007G149600--Sobic003G067500 Sobic002G284901 Sobic002G284901 Sobic007G149600--Sobic002G284901 Sobic007G149600--Sobic001G193400 Sobic001G200500--Sobic008G133100 Sobic010G224800 Sobic010G224800 Sobic001G200500--Sobic010G224800 Sobic007G001300 Sobic007G001300 Sobic001G200500--Sobic007G001300 Sobic009G031100 Sobic009G031100 Sobic001G200500--Sobic009G031100 Sobic001G200500--Sobic001G255700 Sobic001G200500--Sobic002G284800 Sobic003G109400 Sobic003G109400 Sobic001G200500--Sobic003G109400 Sobic002G156300 Sobic002G156300 Sobic001G200500--Sobic002G156300 Sobic001G200500--Sobic003G368150
Octagon: transcription factors


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