Gene annotation
Transcriptome id Sobic.004G230900.2
Synonym
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A194YR69
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF421
NCBI CDD KOG0149; Predicted RNA-binding protein SEB4 (RRM superfamily)
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G22330 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os02g51890.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a022156 , Zm00025a033157 , Zm00025a042566
Brachypodium KQK22298 , KQK01832 , KQK18930
Barley HORVU6Hr1G078060.8 , HORVU6Hr1G078060.14 , HORVU6Hr1G078060.16 , HORVU6Hr1G078060.11 , HORVU6Hr1G078060.10 , HORVU6Hr1G078060.13 , HORVU6Hr1G078060.12 , HORVU6Hr1G078060.5 , HORVU6Hr1G078060.1 , HORVU6Hr1G078060.3 , HORVU6Hr1G078060.2 , HORVU6Hr1G078060.7 , HORVU6Hr1G078060.6 , HORVU6Hr1G078060.9
Wheat TraesCS6A02G318100 , TraesCS6D02G297300 , TraesCS6B02G348100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G350100 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
2 Sobic.002G403400 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
3 Sobic.003G067300 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
4 Sobic.001G193400 DUF538 domain containing protein, putative, expressed -
5 Sobic.003G067500 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
6 Sobic.008G133100 OsWAK13 - OsWAK receptor-like protein kinase, expressed -
7 Sobic.004G265400 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
8 Sobic.001G200500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heavy metal-associated domain containing protein, expressed -
9 Sobic.002G056300 AT hook-containing DNA-binding protein, putative, expressed K11275: histone H1/5
10 Sobic.002G059200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
11 Sobic.007G149600 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
12 Sobic.003G200501 - K11252: histone H2B
13 Sobic.002G210200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
14 Sobic.002G209300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
15 Sobic.001G441800 hydroxyproline-rich glycoprotein family protein, putative, expressed -
16 Sobic.007G221800 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
17 Sobic.002G387100 X8 domain containing protein, expressed -
18 Sobic.002G430200 PSF2 - Putative GINS complex subunit, expressed K10733: GINS2, GINS complex subunit 2
19 Sobic.003G367401 - -
20 Sobic.001G193600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cystathionine gamma-synthase, putative, expressed K01761: methionine-gamma-lyase


Gene co-expression network
sample Sobic004G230900 Sobic004G230900 Sobic003G350100 Sobic003G350100 Sobic004G230900--Sobic003G350100 Sobic002G403400 Sobic002G403400 Sobic004G230900--Sobic002G403400 Sobic003G067300 Sobic003G067300 Sobic004G230900--Sobic003G067300 Sobic001G193400 Sobic001G193400 Sobic004G230900--Sobic001G193400 Sobic003G067500 Sobic003G067500 Sobic004G230900--Sobic003G067500 Sobic008G133100 Sobic008G133100 Sobic004G230900--Sobic008G133100 Sobic004G265400 Sobic004G265400 Sobic004G230900--Sobic004G265400 Sobic001G200500 Sobic001G200500 Sobic004G230900--Sobic001G200500 Sobic002G056300 Sobic002G056300 Sobic004G230900--Sobic002G056300 Sobic003G350100--Sobic003G067300 Sobic003G350100--Sobic004G265400 Sobic007G149600 Sobic007G149600 Sobic003G350100--Sobic007G149600 Sobic003G350100--Sobic001G193400 Sobic003G350100--Sobic003G067500 Sobic003G200501 Sobic003G200501 Sobic003G350100--Sobic003G200501 Sobic002G210200 Sobic002G210200 Sobic003G350100--Sobic002G210200 Sobic002G387100 Sobic002G387100 Sobic003G350100--Sobic002G387100 Sobic003G350100--Sobic008G133100 Sobic002G403400--Sobic003G350100 Sobic002G059200 Sobic002G059200 Sobic002G403400--Sobic002G059200 Sobic002G403400--Sobic004G265400 Sobic002G403400--Sobic003G067300 Sobic002G403400--Sobic007G149600 Sobic002G403400--Sobic001G193400 Sobic002G403400--Sobic003G067500 Sobic007G221800 Sobic007G221800 Sobic002G403400--Sobic007G221800 Sobic002G403400--Sobic003G200501 Sobic003G067300--Sobic003G350100 Sobic003G067300--Sobic003G200501 Sobic003G067300--Sobic003G067500 Sobic003G067300--Sobic002G210200 Sobic003G067300--Sobic007G149600 Sobic003G067300--Sobic002G387100 Sobic002G430200 Sobic002G430200 Sobic003G067300--Sobic002G430200 Sobic003G367401 Sobic003G367401 Sobic003G067300--Sobic003G367401 Sobic003G067300--Sobic004G265400 Sobic001G193400--Sobic003G350100 Sobic001G193400--Sobic003G067300 Sobic001G193400--Sobic004G265400 Sobic001G193400--Sobic007G149600 Sobic001G193400--Sobic003G200501 Sobic001G193400--Sobic003G067500 Sobic001G193400--Sobic002G210200 Sobic001G193400--Sobic002G387100 Sobic001G193400--Sobic002G430200 Sobic003G067500--Sobic003G200501 Sobic003G067500--Sobic002G210200 Sobic003G067500--Sobic003G067300 Sobic002G284901 Sobic002G284901 Sobic003G067500--Sobic002G284901 Sobic003G067500--Sobic007G221800 Sobic002G320900 Sobic002G320900 Sobic003G067500--Sobic002G320900 Sobic003G067500--Sobic004G265400 Sobic001G525000 Sobic001G525000 Sobic003G067500--Sobic001G525000 Sobic003G120400 Sobic003G120400 Sobic003G067500--Sobic003G120400 Sobic002G284800 Sobic002G284800 Sobic008G133100--Sobic002G284800 Sobic001G255700 Sobic001G255700 Sobic008G133100--Sobic001G255700 Sobic003G368150 Sobic003G368150 Sobic008G133100--Sobic003G368150 Sobic001G441800 Sobic001G441800 Sobic008G133100--Sobic001G441800 Sobic004G239000 Sobic004G239000 Sobic008G133100--Sobic004G239000 Sobic008G131800 Sobic008G131800 Sobic008G133100--Sobic008G131800 Sobic003G105300 Sobic003G105300 Sobic008G133100--Sobic003G105300 Sobic004G197300 Sobic004G197300 Sobic008G133100--Sobic004G197300 Sobic008G133100--Sobic001G200500 Sobic004G265400--Sobic007G149600 Sobic004G265400--Sobic007G221800 Sobic004G265400--Sobic003G350100 Sobic004G265400--Sobic003G067300 Sobic004G265400--Sobic003G067500 Sobic004G265400--Sobic003G200501 Sobic004G265400--Sobic002G210200 Sobic004G265400--Sobic001G193400 Sobic004G265400--Sobic002G059200 Sobic001G200500--Sobic008G133100 Sobic010G224800 Sobic010G224800 Sobic001G200500--Sobic010G224800 Sobic007G001300 Sobic007G001300 Sobic001G200500--Sobic007G001300 Sobic009G031100 Sobic009G031100 Sobic001G200500--Sobic009G031100 Sobic001G200500--Sobic001G255700 Sobic001G200500--Sobic002G284800 Sobic003G109400 Sobic003G109400 Sobic001G200500--Sobic003G109400 Sobic002G156300 Sobic002G156300 Sobic001G200500--Sobic002G156300 Sobic001G200500--Sobic003G368150 Sobic002G056300--Sobic002G059200 Sobic002G056300--Sobic002G403400 Sobic002G056300--Sobic003G350100 Sobic002G056300--Sobic003G067300 Sobic002G056300--Sobic004G265400 Sobic001G416800 Sobic001G416800 Sobic002G056300--Sobic001G416800 Sobic002G056300--Sobic008G133100 Sobic002G056300--Sobic007G149600 Sobic002G056300--Sobic001G200500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.