Gene annotation
Transcriptome id Sobic.001G417000.2,Sobic.001G417000.1,Sobic.001G417000.3
Synonym H2B, Sb01g039260, HTB2
Functional annotation Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
UniProt C5WPC5
Pfam PF00125
Panther DB PTHR23428
NCBI CDD KOG1744; Histone H2B
KEGG Orthology K11252; histone H2B
Gene Ontology GO:0003677; DNA binding GO:0000786nucleosome


Orthologs (automatic annotation)
TAIR AT3G45980 : Histone superfamily protein
RAP-DB (Rice) LOC_Os03g17084.1 : Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a026935 , Zm00025a023416 , Zm00025a056569 , Zm00025a047105 , Zm00025a039690 , Zm00025a032481 , Zm00025a005748 , Zm00025a028433 , Zm00025a052736 , Zm00025a013950 , Zm00025a015351 , Zm00025a030742 , Zm00025a038415 , Zm00025a053512
Brachypodium KQK02276 , KQK13244 , KQK10503 , KQK06664 , KQK02281 , PNT74146 , KQK05897 , KQK19386 , PNT76946 , KQK01215 , KQK06658 , KQK22306 , KQK20688
Barley HORVU1Hr1G078480.8 , HORVU1Hr1G078480.1 , HORVU1Hr1G078480.4 , HORVU1Hr1G078480.6 , HORVU1Hr1G078480.7 , HORVU1Hr1G091370.1 , HORVU0Hr1G001420.1 , HORVU3Hr1G086610.2 , HORVU3Hr1G086610.3 , HORVU3Hr1G086610.1 , HORVU3Hr1G086610.4 , HORVU7Hr1G110310.1 , HORVU3Hr1G086620.1 , HORVU1Hr1G078480.3 , HORVU3Hr1G013530.1 , HORVU3Hr1G013530.2 , HORVU6Hr1G015760.2 , HORVU6Hr1G015760.1 , HORVU6Hr1G008470.1 , HORVU6Hr1G008470.3 , HORVU6Hr1G008470.2 , HORVU3Hr1G015810.1 , HORVU3Hr1G015810.2 , HORVU3Hr1G015810.3 , HORVU7Hr1G110130.2 , HORVU7Hr1G110130.1 , HORVU1Hr1G056530.1 , HORVU1Hr1G056530.2 , HORVU1Hr1G056530.3 , HORVU1Hr1G056530.4 , HORVU4Hr1G070240.4 , HORVU4Hr1G070240.3 , HORVU4Hr1G070240.2 , HORVU4Hr1G070240.1 , HORVU6Hr1G006110.1 , HORVU4Hr1G009040.1 , HORVU4Hr1G009040.3 , HORVU4Hr1G009040.2 , HORVU7Hr1G110330.1 , HORVU7Hr1G110170.2 , HORVU7Hr1G110170.1 , HORVU7Hr1G110330.2 , HORVU4Hr1G073130.4 , HORVU6Hr1G083110.1 , HORVU4Hr1G073130.1 , HORVU4Hr1G073130.2 , HORVU4Hr1G073130.3 , HORVU1Hr1G078530.3 , HORVU1Hr1G078530.4 , HORVU1Hr1G078530.5 , HORVU1Hr1G078530.6 , HORVU1Hr1G078530.7 , HORVU1Hr1G058500.3 , HORVU3Hr1G013680.2 , HORVU3Hr1G013680.1 , HORVU2Hr1G077630.1 , HORVU2Hr1G077630.3 , HORVU2Hr1G077630.2 , HORVU3Hr1G034060.1 , HORVU3Hr1G034060.2 , HORVU1Hr1G049920.1 , HORVU1Hr1G066130.1 , HORVU6Hr1G015790.2 , HORVU6Hr1G015790.3 , HORVU6Hr1G015790.1 , HORVU1Hr1G058500.2 , HORVU1Hr1G058500.1 , HORVU7Hr1G110290.1 , HORVU1Hr1G085540.1 , HORVU5Hr1G094500.3 , HORVU0Hr1G006420.1 , HORVU1Hr1G072190.1 , HORVU1Hr1G072190.2 , HORVU1Hr1G072190.3 , HORVU1Hr1G072190.4 , HORVU1Hr1G072190.5 , HORVU5Hr1G094500.2 , HORVU5Hr1G094500.1 , HORVU6Hr1G087190.1 , HORVU6Hr1G008320.1 , HORVU6Hr1G008320.2 , HORVU3Hr1G086580.1 , HORVU7Hr1G110190.1 , HORVU7Hr1G110090.1 , HORVU7Hr1G110090.2 , HORVU6Hr1G005950.1 , HORVU6Hr1G005950.3 , HORVU6Hr1G005950.2 , HORVU1Hr1G078530.10
Wheat TraesCSU02G169400 , TraesCS4D02G205300 , TraesCSU02G170900 , TraesCSU02G170400 , TraesCS2A02G312400 , TraesCSU02G169700 , TraesCS1A02G190400 , TraesCS7B02G394800 , TraesCS7B02G394500 , TraesCSU02G170600 , TraesCS6B02G055300 , TraesCSU02G169300 , TraesCSU02G169800 , TraesCSU02G170500 , TraesCSU02G170700 , TraesCS7B02G394400 , TraesCS3A02G075800 , TraesCSU02G169900 , TraesCS6B02G055500 , TraesCS4A02G030500 , TraesCSU02G171100 , TraesCS1D02G232900 , TraesCSU02G171000 , TraesCSU02G169500
Populus -


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cDNA sequences
Sobic.001G417000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G300701 - -
2 Sobic.001G416900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
3 Sobic.001G416800 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
4 Sobic.002G059200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
5 Sobic.010G013100 expressed protein -
6 Sobic.002G403400 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
7 Sobic.002G056300 AT hook-containing DNA-binding protein, putative, expressed K11275: histone H1/5
8 Sobic.001G158000 selT/selW/selH selenoprotein domain containing protein, expressed -
9 Sobic.003G127600 ubiquitin-conjugating enzyme, putative, expressed K06688: UBE2C, ubiquitin-conjugating enzyme E2 C
10 Sobic.004G265400 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
11 Sobic.010G099400 metalloendoproteinase 1 precursor, putative, expressed -
12 Sobic.007G149600 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
13 Sobic.002G209300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
14 Sobic.007G221800 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
15 Sobic.003G286100 mitochondrial import receptor subunit TOM7-1, putative, expressed K17771: mitochondrial import receptor subunit TOM7
16 Sobic.003G350100 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
17 Sobic.004G192700 dynein light chain type 1 family protein, putative, expressed K10418: dynein light chain LC8-type
18 Sobic.008G189600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nodulin, putative, expressed -
19 Sobic.003G301200 expressed protein -
20 Sobic.004G227000 expressed protein -


Gene co-expression network
sample Sobic001G417000 Sobic001G417000 Sobic003G300701 Sobic003G300701 Sobic001G417000--Sobic003G300701 Sobic001G416900 Sobic001G416900 Sobic001G417000--Sobic001G416900 Sobic001G416800 Sobic001G416800 Sobic001G417000--Sobic001G416800 Sobic002G059200 Sobic002G059200 Sobic001G417000--Sobic002G059200 Sobic010G013100 Sobic010G013100 Sobic001G417000--Sobic010G013100 Sobic002G403400 Sobic002G403400 Sobic001G417000--Sobic002G403400 Sobic002G056300 Sobic002G056300 Sobic001G417000--Sobic002G056300 Sobic001G158000 Sobic001G158000 Sobic001G417000--Sobic001G158000 Sobic003G127600 Sobic003G127600 Sobic001G417000--Sobic003G127600 Sobic003G300701--Sobic001G417000 Sobic003G300701--Sobic010G013100 Sobic003G300701--Sobic001G416900 Sobic003G301200 Sobic003G301200 Sobic003G300701--Sobic003G301200 Sobic007G081300 Sobic007G081300 Sobic003G300701--Sobic007G081300 Sobic003G300701--Sobic001G158000 Sobic003G300701--Sobic002G059200 Sobic004G265400 Sobic004G265400 Sobic003G300701--Sobic004G265400 Sobic003G235800 Sobic003G235800 Sobic003G300701--Sobic003G235800 Sobic001G416900--Sobic001G416800 Sobic001G416900--Sobic003G127600 Sobic001G416900--Sobic001G417000 Sobic001G416900--Sobic002G059200 Sobic009G123000 Sobic009G123000 Sobic001G416900--Sobic009G123000 Sobic002G209300 Sobic002G209300 Sobic001G416900--Sobic002G209300 Sobic001G416900--Sobic002G403400 Sobic001G416900--Sobic002G056300 Sobic001G416900--Sobic003G300701 Sobic001G416800--Sobic003G127600 Sobic001G416800--Sobic001G416900 Sobic001G416800--Sobic002G056300 Sobic001G416800--Sobic002G059200 Sobic001G416800--Sobic002G403400 Sobic001G416800--Sobic009G123000 Sobic003G350100 Sobic003G350100 Sobic001G416800--Sobic003G350100 Sobic008G061000 Sobic008G061000 Sobic001G416800--Sobic008G061000 Sobic004G227000 Sobic004G227000 Sobic001G416800--Sobic004G227000 Sobic002G059200--Sobic002G403400 Sobic002G059200--Sobic003G350100 Sobic002G059200--Sobic004G265400 Sobic007G149600 Sobic007G149600 Sobic002G059200--Sobic007G149600 Sobic001G193400 Sobic001G193400 Sobic002G059200--Sobic001G193400 Sobic003G067300 Sobic003G067300 Sobic002G059200--Sobic003G067300 Sobic002G059200--Sobic002G056300 Sobic007G221800 Sobic007G221800 Sobic002G059200--Sobic007G221800 Sobic003G067500 Sobic003G067500 Sobic002G059200--Sobic003G067500 Sobic010G013100--Sobic003G300701 Sobic010G013100--Sobic001G416900 Sobic010G013100--Sobic001G417000 Sobic009G167500 Sobic009G167500 Sobic010G013100--Sobic009G167500 Sobic007G168400 Sobic007G168400 Sobic010G013100--Sobic007G168400 Sobic001G009700 Sobic001G009700 Sobic010G013100--Sobic001G009700 Sobic001G216800 Sobic001G216800 Sobic010G013100--Sobic001G216800 Sobic004G300701 Sobic004G300701 Sobic010G013100--Sobic004G300701 Sobic004G259700 Sobic004G259700 Sobic010G013100--Sobic004G259700 Sobic002G403400--Sobic003G350100 Sobic002G403400--Sobic002G059200 Sobic002G403400--Sobic004G265400 Sobic002G403400--Sobic003G067300 Sobic002G403400--Sobic007G149600 Sobic002G403400--Sobic001G193400 Sobic002G403400--Sobic003G067500 Sobic002G403400--Sobic007G221800 Sobic003G200501 Sobic003G200501 Sobic002G403400--Sobic003G200501 Sobic002G056300--Sobic002G059200 Sobic002G056300--Sobic002G403400 Sobic002G056300--Sobic003G350100 Sobic002G056300--Sobic003G067300 Sobic002G056300--Sobic004G265400 Sobic002G056300--Sobic001G416800 Sobic008G133100 Sobic008G133100 Sobic002G056300--Sobic008G133100 Sobic002G056300--Sobic007G149600 Sobic001G200500 Sobic001G200500 Sobic002G056300--Sobic001G200500 Sobic001G158000--Sobic007G221800 Sobic002G326050 Sobic002G326050 Sobic001G158000--Sobic002G326050 Sobic001G158000--Sobic004G265400 Sobic001G519300 Sobic001G519300 Sobic001G158000--Sobic001G519300 Sobic007G224600 Sobic007G224600 Sobic001G158000--Sobic007G224600 Sobic001G158000--Sobic007G149600 Sobic001G158000--Sobic003G067500 Sobic001G158000--Sobic003G200501 Sobic002G210200 Sobic002G210200 Sobic001G158000--Sobic002G210200 Sobic003G127600--Sobic001G416800 Sobic003G127600--Sobic009G123000 Sobic003G127600--Sobic001G416900 Sobic003G127600--Sobic002G056300 Sobic003G127600--Sobic002G059200 Sobic003G127600--Sobic004G227000 Sobic003G127600--Sobic008G061000 Sobic004G128600 Sobic004G128600 Sobic003G127600--Sobic004G128600 Sobic003G127600--Sobic002G403400
Octagon: transcription factors


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