Gene annotation
Transcriptome id Sobic.004G192700.1
Synonym Sb04g024060
Functional annotation dynein light chain type 1 family protein, putative, expressed
UniProt C5XVS2
Pfam PF01221
Panther DB PTHR11886 PTHR11886:SF39
NCBI CDD KOG3430; Dynein light chain type 1
KEGG Orthology K10418; dynein light chain LC8-type
Gene Ontology GO:0007017; microtubule-based process GO:0005875microtubule associated complex


Orthologs (automatic annotation)
TAIR AT1G23220 : Dynein light chain type 1 family protein
RAP-DB (Rice) LOC_Os02g36990.1 : dynein light chain type 1 family protein, putative, expressed
MaizeGDB (Corn) Zm00025a031754 , Zm00025a020833
Brachypodium PNT68916 , PNT68917 , KQK00045 , KQK00044 , KQK00046 , KQJ82999
Barley -
Wheat TraesCS2A02G337200 , TraesCS6D02G189000 , TraesCS2D02G325700 , TraesCS2B02G344700 , TraesCS6B02G224400
Populus -


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cDNA sequences
Sobic.004G192700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G265400 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
2 Sobic.003G067500 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
3 Sobic.007G149600 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
4 Sobic.003G200501 - K11252: histone H2B
5 Sobic.002G210200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
6 Sobic.007G221800 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
7 Sobic.010G073300 expressed protein -
8 Sobic.003G067300 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
9 Sobic.002G284901 - -
10 Sobic.003G120400 expressed protein -
11 Sobic.003G350100 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
12 Sobic.001G525000 polygalacturonase, putative, expressed -
13 Sobic.002G320900 patatin-like phospholipase family protein, expressed -
14 Sobic.001G130900 expressed protein -
15 Sobic.002G387100 X8 domain containing protein, expressed -
16 Sobic.002G430200 PSF2 - Putative GINS complex subunit, expressed K10733: GINS2, GINS complex subunit 2
17 Sobic.003G092200 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
18 Sobic.006G065700 DUF677 domain containing protein, putative, expressed -
19 Sobic.003G367401 - -
20 Sobic.007G093400 - -


Gene co-expression network
sample Sobic004G192700 Sobic004G192700 Sobic004G265400 Sobic004G265400 Sobic004G192700--Sobic004G265400 Sobic003G067500 Sobic003G067500 Sobic004G192700--Sobic003G067500 Sobic007G149600 Sobic007G149600 Sobic004G192700--Sobic007G149600 Sobic003G200501 Sobic003G200501 Sobic004G192700--Sobic003G200501 Sobic002G210200 Sobic002G210200 Sobic004G192700--Sobic002G210200 Sobic007G221800 Sobic007G221800 Sobic004G192700--Sobic007G221800 Sobic010G073300 Sobic010G073300 Sobic004G192700--Sobic010G073300 Sobic003G067300 Sobic003G067300 Sobic004G192700--Sobic003G067300 Sobic002G284901 Sobic002G284901 Sobic004G192700--Sobic002G284901 Sobic004G265400--Sobic007G149600 Sobic004G265400--Sobic007G221800 Sobic003G350100 Sobic003G350100 Sobic004G265400--Sobic003G350100 Sobic004G265400--Sobic003G067300 Sobic004G265400--Sobic003G067500 Sobic004G265400--Sobic003G200501 Sobic004G265400--Sobic002G210200 Sobic001G193400 Sobic001G193400 Sobic004G265400--Sobic001G193400 Sobic002G059200 Sobic002G059200 Sobic004G265400--Sobic002G059200 Sobic003G067500--Sobic003G200501 Sobic003G067500--Sobic002G210200 Sobic003G067500--Sobic003G067300 Sobic003G067500--Sobic002G284901 Sobic003G067500--Sobic007G221800 Sobic002G320900 Sobic002G320900 Sobic003G067500--Sobic002G320900 Sobic003G067500--Sobic004G265400 Sobic001G525000 Sobic001G525000 Sobic003G067500--Sobic001G525000 Sobic003G120400 Sobic003G120400 Sobic003G067500--Sobic003G120400 Sobic007G149600--Sobic004G265400 Sobic007G149600--Sobic007G221800 Sobic007G149600--Sobic003G067300 Sobic007G149600--Sobic003G200501 Sobic007G149600--Sobic002G210200 Sobic007G149600--Sobic003G350100 Sobic007G149600--Sobic003G067500 Sobic007G149600--Sobic002G284901 Sobic007G149600--Sobic001G193400 Sobic003G200501--Sobic002G210200 Sobic003G200501--Sobic003G067500 Sobic003G200501--Sobic002G284901 Sobic003G200501--Sobic002G320900 Sobic003G200501--Sobic003G120400 Sobic003G200501--Sobic001G525000 Sobic003G200501--Sobic003G067300 Sobic003G200501--Sobic007G221800 Sobic007G093400 Sobic007G093400 Sobic003G200501--Sobic007G093400 Sobic002G210200--Sobic003G200501 Sobic002G210200--Sobic003G067500 Sobic002G210200--Sobic002G320900 Sobic002G210200--Sobic002G284901 Sobic002G210200--Sobic001G525000 Sobic002G210200--Sobic003G120400 Sobic002G210200--Sobic007G093400 Sobic002G210200--Sobic003G067300 Sobic002G210200--Sobic007G221800 Sobic007G221800--Sobic007G149600 Sobic007G221800--Sobic003G200501 Sobic007G221800--Sobic002G210200 Sobic007G221800--Sobic004G265400 Sobic007G221800--Sobic003G067500 Sobic007G221800--Sobic002G284901 Sobic007G221800--Sobic002G320900 Sobic007G221800--Sobic003G067300 Sobic007G221800--Sobic007G093400 Sobic010G073300--Sobic002G284901 Sobic010G073300--Sobic003G120400 Sobic010G073300--Sobic001G525000 Sobic010G073300--Sobic002G320900 Sobic002G430200 Sobic002G430200 Sobic010G073300--Sobic002G430200 Sobic001G130900 Sobic001G130900 Sobic010G073300--Sobic001G130900 Sobic010G073300--Sobic003G200501 Sobic002G387100 Sobic002G387100 Sobic010G073300--Sobic002G387100 Sobic010G073300--Sobic002G210200 Sobic003G067300--Sobic003G350100 Sobic003G067300--Sobic003G200501 Sobic003G067300--Sobic003G067500 Sobic003G067300--Sobic002G210200 Sobic003G067300--Sobic007G149600 Sobic003G067300--Sobic002G387100 Sobic003G067300--Sobic002G430200 Sobic003G367401 Sobic003G367401 Sobic003G067300--Sobic003G367401 Sobic003G067300--Sobic004G265400 Sobic002G284901--Sobic002G320900 Sobic002G284901--Sobic003G200501 Sobic002G284901--Sobic002G210200 Sobic002G284901--Sobic003G120400 Sobic002G284901--Sobic001G525000 Sobic002G284901--Sobic007G093400 Sobic006G065700 Sobic006G065700 Sobic002G284901--Sobic006G065700 Sobic002G284901--Sobic003G067500 Sobic002G284901--Sobic002G430200
Octagon: transcription factors


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