Gene annotation
Transcriptome id Sobic.003G301200.1
Synonym RIP2, Sb03g035030
Functional annotation expressed protein
UniProt C5XKR8
Pfam -
Panther DB PTHR34224 PTHR34224:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G60210 : ROP interactive partner 5
RAP-DB (Rice) LOC_Os01g55280.1 : expressed protein
MaizeGDB (Corn) Zm00025a040010 , Zm00025a027515
Brachypodium KQK09815
Barley HORVU3Hr1G072880.4 , HORVU3Hr1G072880.5 , HORVU3Hr1G072880.1 , HORVU3Hr1G072880.2 , HORVU3Hr1G072880.3
Wheat TraesCS3A02G294600 , TraesCS3B02G329200 , TraesCS3D02G294400
Populus -


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cDNA sequences
Sobic.003G301200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G081300 peptide transporter PTR2, putative, expressed -
2 Sobic.006G278400 ZOS4-14 - C2H2 zinc finger protein, expressed -
3 Sobic.003G235800 "domain confirmed by Pfam database, expressed in leaf, flower, stem and root, expression induced by IAA and BR treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed K13947: auxin efflux carrier family protein
4 Sobic.001G180300 expressed protein -
5 Sobic.004G227000 expressed protein -
6 Sobic.010G189800 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
7 Sobic.008G163600 expressed protein -
8 Sobic.006G005000 expressed protein -
9 Sobic.006G187600 DUF623 domain containing protein, expressed -
10 Sobic.007G149600 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
11 Sobic.004G192700 dynein light chain type 1 family protein, putative, expressed K10418: dynein light chain LC8-type
12 Sobic.003G092200 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
13 Sobic.002G416000 pectinesterase, putative, expressed K01051: pectinesterase
14 Sobic.004G275500 helix-loop-helix DNA-binding protein, putative, expressed -
15 Sobic.010G014200 expressed protein -
16 Sobic.004G265400 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
17 Sobic.004G155900 heavy metal-associated domain containing protein, expressed -
18 Sobic.007G221800 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
19 Sobic.003G300701 - -
20 Sobic.002G059200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A


Gene co-expression network
sample Sobic003G301200 Sobic003G301200 Sobic007G081300 Sobic007G081300 Sobic003G301200--Sobic007G081300 Sobic006G278400 Sobic006G278400 Sobic003G301200--Sobic006G278400 Sobic003G235800 Sobic003G235800 Sobic003G301200--Sobic003G235800 Sobic001G180300 Sobic001G180300 Sobic003G301200--Sobic001G180300 Sobic004G227000 Sobic004G227000 Sobic003G301200--Sobic004G227000 Sobic010G189800 Sobic010G189800 Sobic003G301200--Sobic010G189800 Sobic008G163600 Sobic008G163600 Sobic003G301200--Sobic008G163600 Sobic006G005000 Sobic006G005000 Sobic003G301200--Sobic006G005000 Sobic006G187600 Sobic006G187600 Sobic003G301200--Sobic006G187600 Sobic007G081300--Sobic003G301200 Sobic007G081300--Sobic006G278400 Sobic007G081300--Sobic010G189800 Sobic007G081300--Sobic001G180300 Sobic003G092200 Sobic003G092200 Sobic007G081300--Sobic003G092200 Sobic007G081300--Sobic004G227000 Sobic007G149600 Sobic007G149600 Sobic007G081300--Sobic007G149600 Sobic007G081300--Sobic006G187600 Sobic007G081300--Sobic006G005000 Sobic006G278400--Sobic004G227000 Sobic006G278400--Sobic001G180300 Sobic006G278400--Sobic003G301200 Sobic006G278400--Sobic008G163600 Sobic006G278400--Sobic007G081300 Sobic006G278400--Sobic006G187600 Sobic010G014200 Sobic010G014200 Sobic006G278400--Sobic010G014200 Sobic002G425900 Sobic002G425900 Sobic006G278400--Sobic002G425900 Sobic004G128600 Sobic004G128600 Sobic006G278400--Sobic004G128600 Sobic003G235800--Sobic003G301200 Sobic006G259201 Sobic006G259201 Sobic003G235800--Sobic006G259201 Sobic006G227800 Sobic006G227800 Sobic003G235800--Sobic006G227800 Sobic003G235800--Sobic006G005000 Sobic003G235800--Sobic007G081300 Sobic002G416000 Sobic002G416000 Sobic003G235800--Sobic002G416000 Sobic004G155900 Sobic004G155900 Sobic003G235800--Sobic004G155900 Sobic007G221800 Sobic007G221800 Sobic003G235800--Sobic007G221800 Sobic004G055800 Sobic004G055800 Sobic003G235800--Sobic004G055800 Sobic001G180300--Sobic006G187600 Sobic001G180300--Sobic004G227000 Sobic001G180300--Sobic006G278400 Sobic001G180300--Sobic010G014200 Sobic001G180300--Sobic003G092200 Sobic001G180300--Sobic002G425900 Sobic001G180300--Sobic008G163600 Sobic004G329100 Sobic004G329100 Sobic001G180300--Sobic004G329100 Sobic010G178900 Sobic010G178900 Sobic001G180300--Sobic010G178900 Sobic004G227000--Sobic006G278400 Sobic004G227000--Sobic001G180300 Sobic004G227000--Sobic002G425900 Sobic004G227000--Sobic006G187600 Sobic004G227000--Sobic004G128600 Sobic010G224800 Sobic010G224800 Sobic004G227000--Sobic010G224800 Sobic002G059200 Sobic002G059200 Sobic004G227000--Sobic002G059200 Sobic004G227000--Sobic004G329100 Sobic010G114400 Sobic010G114400 Sobic004G227000--Sobic010G114400 Sobic010G189800--Sobic007G081300 Sobic004G192700 Sobic004G192700 Sobic010G189800--Sobic004G192700 Sobic010G189800--Sobic003G092200 Sobic010G189800--Sobic006G187600 Sobic010G073300 Sobic010G073300 Sobic010G189800--Sobic010G073300 Sobic010G189800--Sobic007G149600 Sobic010G189800--Sobic004G227000 Sobic010G189800--Sobic003G301200 Sobic001G441800 Sobic001G441800 Sobic010G189800--Sobic001G441800 Sobic008G163600--Sobic002G425900 Sobic008G163600--Sobic010G224800 Sobic008G163600--Sobic006G278400 Sobic008G163600--Sobic010G114400 Sobic002G284800 Sobic002G284800 Sobic008G163600--Sobic002G284800 Sobic001G255700 Sobic001G255700 Sobic008G163600--Sobic001G255700 Sobic010G179150 Sobic010G179150 Sobic008G163600--Sobic010G179150 Sobic007G001300 Sobic007G001300 Sobic008G163600--Sobic007G001300 Sobic004G197300 Sobic004G197300 Sobic008G163600--Sobic004G197300 Sobic007G224600 Sobic007G224600 Sobic006G005000--Sobic007G224600 Sobic001G220200 Sobic001G220200 Sobic006G005000--Sobic001G220200 Sobic006G005000--Sobic007G221800 Sobic004G357033 Sobic004G357033 Sobic006G005000--Sobic004G357033 Sobic001G130900 Sobic001G130900 Sobic006G005000--Sobic001G130900 Sobic006G005000--Sobic006G259201 Sobic010G074980 Sobic010G074980 Sobic006G005000--Sobic010G074980 Sobic009G225300 Sobic009G225300 Sobic006G005000--Sobic009G225300 Sobic006G005000--Sobic004G192700 Sobic006G187600--Sobic001G180300 Sobic006G187600--Sobic004G227000 Sobic006G187600--Sobic002G425900 Sobic006G187600--Sobic003G092200 Sobic006G187600--Sobic010G178900 Sobic006G187600--Sobic010G224800 Sobic006G187600--Sobic004G197300 Sobic006G187600--Sobic010G114400 Sobic006G187600--Sobic001G441800
Octagon: transcription factors


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