Gene annotation
Transcriptome id Sobic.004G155900.1
Synonym FP3, Sb04g020690, ATFP3
Functional annotation heavy metal-associated domain containing protein, expressed
UniProt C5XSM2
Pfam PF00403
Panther DB PTHR22814 PTHR22814:SF142
NCBI CDD KOG1603; Copper chaperone
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G50740 : Heavy metal transport/detoxification superfamily protein
RAP-DB (Rice) LOC_Os02g30650.1 : heavy metal-associated domain containing protein, expressed
MaizeGDB (Corn) Zm00025a020405
Brachypodium KQJ82290
Barley HORVU2Hr1G070160.1 , HORVU2Hr1G070140.1 , HORVU2Hr1G070140.4 , HORVU2Hr1G070140.2 , HORVU2Hr1G070140.3 , HORVU2Hr1G070140.6 , HORVU2Hr1G070140.7 , HORVU2Hr1G070140.5
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G235800 "domain confirmed by Pfam database, expressed in leaf, flower, stem and root, expression induced by IAA and BR treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed K13947: auxin efflux carrier family protein
2 Sobic.003G301200 expressed protein -
3 Sobic.010G191100 helix-loop-helix DNA-binding, putative, expressed -
4 Sobic.002G416000 pectinesterase, putative, expressed K01051: pectinesterase
5 Sobic.002G229800 DUF617 domain containing protein, expressed -
6 Sobic.008G137500 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
7 Sobic.007G081300 peptide transporter PTR2, putative, expressed -
8 Sobic.010G189800 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
9 Sobic.006G278400 ZOS4-14 - C2H2 zinc finger protein, expressed -
10 Sobic.006G163600 Trihelix Family(PubMedID : 24864043)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
11 Sobic.009G229100 expressed protein -
12 Sobic.002G221400 ZOS9-14 - C2H2 zinc finger protein, expressed -
13 Sobic.004G055800 splicing factor, arginine/serine-rich 12, putative, expressed -
14 Sobic.003G300701 - -
15 Sobic.006G005000 expressed protein -
16 Sobic.010G246500 glycosyl hydrolases family 16, putative, expressed -
17 Sobic.001G527500 helix-loop-helix DNA-binding domain containing protein, expressed -
18 Sobic.004G115600 HMG1/2, putative, expressed K09273: upstream-binding transcription factor
19 Sobic.001G180300 expressed protein -
20 Sobic.008G189600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nodulin, putative, expressed -


Gene co-expression network
sample Sobic004G155900 Sobic004G155900 Sobic003G235800 Sobic003G235800 Sobic004G155900--Sobic003G235800 Sobic003G301200 Sobic003G301200 Sobic004G155900--Sobic003G301200 Sobic010G191100 Sobic010G191100 Sobic004G155900--Sobic010G191100 Sobic002G416000 Sobic002G416000 Sobic004G155900--Sobic002G416000 Sobic002G229800 Sobic002G229800 Sobic004G155900--Sobic002G229800 Sobic008G137500 Sobic008G137500 Sobic004G155900--Sobic008G137500 Sobic007G081300 Sobic007G081300 Sobic004G155900--Sobic007G081300 Sobic010G189800 Sobic010G189800 Sobic004G155900--Sobic010G189800 Sobic006G278400 Sobic006G278400 Sobic004G155900--Sobic006G278400 Sobic003G235800--Sobic003G301200 Sobic006G259201 Sobic006G259201 Sobic003G235800--Sobic006G259201 Sobic006G227800 Sobic006G227800 Sobic003G235800--Sobic006G227800 Sobic006G005000 Sobic006G005000 Sobic003G235800--Sobic006G005000 Sobic003G235800--Sobic007G081300 Sobic003G235800--Sobic002G416000 Sobic003G235800--Sobic004G155900 Sobic007G221800 Sobic007G221800 Sobic003G235800--Sobic007G221800 Sobic004G055800 Sobic004G055800 Sobic003G235800--Sobic004G055800 Sobic003G301200--Sobic007G081300 Sobic003G301200--Sobic006G278400 Sobic003G301200--Sobic003G235800 Sobic001G180300 Sobic001G180300 Sobic003G301200--Sobic001G180300 Sobic004G227000 Sobic004G227000 Sobic003G301200--Sobic004G227000 Sobic003G301200--Sobic010G189800 Sobic008G163600 Sobic008G163600 Sobic003G301200--Sobic008G163600 Sobic003G301200--Sobic006G005000 Sobic006G187600 Sobic006G187600 Sobic003G301200--Sobic006G187600 Sobic010G191100--Sobic008G137500 Sobic010G191100--Sobic004G155900 Sobic009G070500 Sobic009G070500 Sobic010G191100--Sobic009G070500 Sobic002G154300 Sobic002G154300 Sobic010G191100--Sobic002G154300 Sobic006G163600 Sobic006G163600 Sobic010G191100--Sobic006G163600 Sobic010G246500 Sobic010G246500 Sobic010G191100--Sobic010G246500 Sobic010G191100--Sobic003G301200 Sobic010G191100--Sobic002G229800 Sobic001G273100 Sobic001G273100 Sobic010G191100--Sobic001G273100 Sobic002G416000--Sobic006G187600 Sobic002G416000--Sobic001G180300 Sobic002G416000--Sobic004G227000 Sobic003G092200 Sobic003G092200 Sobic002G416000--Sobic003G092200 Sobic002G416000--Sobic003G235800 Sobic002G416000--Sobic010G189800 Sobic002G416000--Sobic006G278400 Sobic002G416000--Sobic007G081300 Sobic002G416000--Sobic003G301200 Sobic006G278800 Sobic006G278800 Sobic002G229800--Sobic006G278800 Sobic002G229800--Sobic004G155900 Sobic006G108000 Sobic006G108000 Sobic002G229800--Sobic006G108000 Sobic001G474300 Sobic001G474300 Sobic002G229800--Sobic001G474300 Sobic002G229800--Sobic010G191100 Sobic004G336700 Sobic004G336700 Sobic002G229800--Sobic004G336700 Sobic008G145300 Sobic008G145300 Sobic002G229800--Sobic008G145300 Sobic009G254400 Sobic009G254400 Sobic002G229800--Sobic009G254400 Sobic002G229800--Sobic003G301200 Sobic008G137500--Sobic010G191100 Sobic005G111600 Sobic005G111600 Sobic008G137500--Sobic005G111600 Sobic002G408500 Sobic002G408500 Sobic008G137500--Sobic002G408500 Sobic009G229100 Sobic009G229100 Sobic008G137500--Sobic009G229100 Sobic006G228100 Sobic006G228100 Sobic008G137500--Sobic006G228100 Sobic009G070000 Sobic009G070000 Sobic008G137500--Sobic009G070000 Sobic008G137500--Sobic004G155900 Sobic008G137500--Sobic010G246500 Sobic008G137500--Sobic002G154300 Sobic007G081300--Sobic003G301200 Sobic007G081300--Sobic006G278400 Sobic007G081300--Sobic010G189800 Sobic007G081300--Sobic001G180300 Sobic007G081300--Sobic003G092200 Sobic007G081300--Sobic004G227000 Sobic007G149600 Sobic007G149600 Sobic007G081300--Sobic007G149600 Sobic007G081300--Sobic006G187600 Sobic007G081300--Sobic006G005000 Sobic010G189800--Sobic007G081300 Sobic004G192700 Sobic004G192700 Sobic010G189800--Sobic004G192700 Sobic010G189800--Sobic003G092200 Sobic010G189800--Sobic006G187600 Sobic010G073300 Sobic010G073300 Sobic010G189800--Sobic010G073300 Sobic010G189800--Sobic007G149600 Sobic010G189800--Sobic004G227000 Sobic010G189800--Sobic003G301200 Sobic001G441800 Sobic001G441800 Sobic010G189800--Sobic001G441800 Sobic006G278400--Sobic004G227000 Sobic006G278400--Sobic001G180300 Sobic006G278400--Sobic003G301200 Sobic006G278400--Sobic008G163600 Sobic006G278400--Sobic007G081300 Sobic006G278400--Sobic006G187600 Sobic010G014200 Sobic010G014200 Sobic006G278400--Sobic010G014200 Sobic002G425900 Sobic002G425900 Sobic006G278400--Sobic002G425900 Sobic004G128600 Sobic004G128600 Sobic006G278400--Sobic004G128600
Octagon: transcription factors


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