Gene annotation
Transcriptome id Sobic.010G191100.2,Sobic.010G191100.1
Synonym
Functional annotation helix-loop-helix DNA-binding, putative, expressed
UniProt A0A1W0VTV1 , A0A194YK79
Pfam PF00010
Panther DB PTHR12565 PTHR12565:SF112
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G42300 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os06g41060.1 : helix-loop-helix DNA-binding, putative, expressed
MaizeGDB (Corn) Zm00025a032463 , Zm00025a021724 , Zm00025a042126 , Zm00025a051557
Brachypodium KQK00940 , KQK00941 , KQK11183 , KQK17672 , KQK17671
Barley HORVU7Hr1G094690.7 , HORVU7Hr1G094690.6 , HORVU7Hr1G094690.11 , HORVU7Hr1G094690.10 , HORVU7Hr1G094690.13 , HORVU7Hr1G094690.12 , HORVU7Hr1G094690.3 , HORVU7Hr1G094690.2 , HORVU7Hr1G094690.4 , HORVU7Hr1G094690.9 , HORVU7Hr1G094690.8 , HORVU7Hr1G094690.1 , HORVU6Hr1G068980.12 , HORVU6Hr1G068980.11 , HORVU6Hr1G068980.10 , HORVU6Hr1G068980.9 , HORVU6Hr1G068980.8 , HORVU6Hr1G068980.7 , HORVU6Hr1G068980.6 , HORVU6Hr1G068980.5 , HORVU6Hr1G068980.4 , HORVU6Hr1G068980.3 , HORVU6Hr1G068980.2 , HORVU6Hr1G068980.1 , HORVU7Hr1G094690.5
Wheat TraesCS7A02G403900 , TraesCS6D02G253000 , TraesCS6B02G300400 , TraesCS7B02G303300 , TraesCS6A02G273000 , TraesCS6A02G273000 , TraesCS6A02G273000 , TraesCS7D02G397300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G137500 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
2 Sobic.004G155900 heavy metal-associated domain containing protein, expressed -
3 Sobic.009G070500 uncharacterized protein At4g06744 precursor, putative, expressed -
4 Sobic.002G154300 serine/threonine-protein kinase receptor precursor, putative, expressed -
5 Sobic.006G163600 Trihelix Family(PubMedID : 24864043)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
6 Sobic.010G246500 glycosyl hydrolases family 16, putative, expressed -
7 Sobic.003G301200 expressed protein -
8 Sobic.002G229800 DUF617 domain containing protein, expressed -
9 Sobic.001G273100 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
10 Sobic.004G343700 serine/threonine-protein kinase, putative, expressed -
11 Sobic.006G108000 formin, putative, expressed -
12 Sobic.004G115600 HMG1/2, putative, expressed K09273: upstream-binding transcription factor
13 Sobic.003G300701 - -
14 Sobic.007G068500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@polyphenol oxidase, putative, expressed K00422: polyphenol oxidase
15 Sobic.010G136500 expressed protein -
16 Sobic.003G235800 "domain confirmed by Pfam database, expressed in leaf, flower, stem and root, expression induced by IAA and BR treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed K13947: auxin efflux carrier family protein
17 Sobic.003G373900 universal stress protein domain containing protein, putative, expressed -
18 Sobic.002G221400 ZOS9-14 - C2H2 zinc finger protein, expressed -
19 Sobic.003G325400 methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
20 Sobic.010G234800 expressed protein -


Gene co-expression network
sample Sobic010G191100 Sobic010G191100 Sobic008G137500 Sobic008G137500 Sobic010G191100--Sobic008G137500 Sobic004G155900 Sobic004G155900 Sobic010G191100--Sobic004G155900 Sobic009G070500 Sobic009G070500 Sobic010G191100--Sobic009G070500 Sobic002G154300 Sobic002G154300 Sobic010G191100--Sobic002G154300 Sobic006G163600 Sobic006G163600 Sobic010G191100--Sobic006G163600 Sobic010G246500 Sobic010G246500 Sobic010G191100--Sobic010G246500 Sobic003G301200 Sobic003G301200 Sobic010G191100--Sobic003G301200 Sobic002G229800 Sobic002G229800 Sobic010G191100--Sobic002G229800 Sobic001G273100 Sobic001G273100 Sobic010G191100--Sobic001G273100 Sobic008G137500--Sobic010G191100 Sobic005G111600 Sobic005G111600 Sobic008G137500--Sobic005G111600 Sobic002G408500 Sobic002G408500 Sobic008G137500--Sobic002G408500 Sobic009G229100 Sobic009G229100 Sobic008G137500--Sobic009G229100 Sobic006G228100 Sobic006G228100 Sobic008G137500--Sobic006G228100 Sobic009G070000 Sobic009G070000 Sobic008G137500--Sobic009G070000 Sobic008G137500--Sobic004G155900 Sobic008G137500--Sobic010G246500 Sobic008G137500--Sobic002G154300 Sobic003G235800 Sobic003G235800 Sobic004G155900--Sobic003G235800 Sobic004G155900--Sobic003G301200 Sobic004G155900--Sobic010G191100 Sobic002G416000 Sobic002G416000 Sobic004G155900--Sobic002G416000 Sobic004G155900--Sobic002G229800 Sobic004G155900--Sobic008G137500 Sobic007G081300 Sobic007G081300 Sobic004G155900--Sobic007G081300 Sobic010G189800 Sobic010G189800 Sobic004G155900--Sobic010G189800 Sobic006G278400 Sobic006G278400 Sobic004G155900--Sobic006G278400 Sobic009G070500--Sobic010G246500 Sobic010G077000 Sobic010G077000 Sobic009G070500--Sobic010G077000 Sobic003G338700 Sobic003G338700 Sobic009G070500--Sobic003G338700 Sobic003G325400 Sobic003G325400 Sobic009G070500--Sobic003G325400 Sobic009G146700 Sobic009G146700 Sobic009G070500--Sobic009G146700 Sobic003G373900 Sobic003G373900 Sobic009G070500--Sobic003G373900 Sobic010G070900 Sobic010G070900 Sobic009G070500--Sobic010G070900 Sobic003G239600 Sobic003G239600 Sobic009G070500--Sobic003G239600 Sobic005G199700 Sobic005G199700 Sobic009G070500--Sobic005G199700 Sobic002G154300--Sobic010G191100 Sobic010G271000 Sobic010G271000 Sobic002G154300--Sobic010G271000 Sobic002G154300--Sobic008G137500 Sobic004G343700 Sobic004G343700 Sobic002G154300--Sobic004G343700 Sobic006G069500 Sobic006G069500 Sobic002G154300--Sobic006G069500 Sobic009G233500 Sobic009G233500 Sobic002G154300--Sobic009G233500 Sobic003G273800 Sobic003G273800 Sobic002G154300--Sobic003G273800 Sobic001G511200 Sobic001G511200 Sobic002G154300--Sobic001G511200 Sobic002G154300--Sobic002G408500 Sobic006G163600--Sobic003G301200 Sobic006G163600--Sobic010G189800 Sobic006G163600--Sobic007G081300 Sobic006G163600--Sobic010G191100 Sobic002G221400 Sobic002G221400 Sobic006G163600--Sobic002G221400 Sobic006G163600--Sobic006G278400 Sobic006G163600--Sobic008G137500 Sobic006G163600--Sobic004G155900 Sobic006G247500 Sobic006G247500 Sobic006G163600--Sobic006G247500 Sobic010G246500--Sobic009G070500 Sobic010G246500--Sobic003G239600 Sobic010G246500--Sobic006G228100 Sobic002G312300 Sobic002G312300 Sobic010G246500--Sobic002G312300 Sobic003G298700 Sobic003G298700 Sobic010G246500--Sobic003G298700 Sobic010G246500--Sobic008G137500 Sobic010G078700 Sobic010G078700 Sobic010G246500--Sobic010G078700 Sobic002G194500 Sobic002G194500 Sobic010G246500--Sobic002G194500 Sobic002G202500 Sobic002G202500 Sobic010G246500--Sobic002G202500 Sobic003G301200--Sobic007G081300 Sobic003G301200--Sobic006G278400 Sobic003G301200--Sobic003G235800 Sobic001G180300 Sobic001G180300 Sobic003G301200--Sobic001G180300 Sobic004G227000 Sobic004G227000 Sobic003G301200--Sobic004G227000 Sobic003G301200--Sobic010G189800 Sobic008G163600 Sobic008G163600 Sobic003G301200--Sobic008G163600 Sobic006G005000 Sobic006G005000 Sobic003G301200--Sobic006G005000 Sobic006G187600 Sobic006G187600 Sobic003G301200--Sobic006G187600 Sobic006G278800 Sobic006G278800 Sobic002G229800--Sobic006G278800 Sobic002G229800--Sobic004G155900 Sobic006G108000 Sobic006G108000 Sobic002G229800--Sobic006G108000 Sobic001G474300 Sobic001G474300 Sobic002G229800--Sobic001G474300 Sobic002G229800--Sobic010G191100 Sobic004G336700 Sobic004G336700 Sobic002G229800--Sobic004G336700 Sobic008G145300 Sobic008G145300 Sobic002G229800--Sobic008G145300 Sobic009G254400 Sobic009G254400 Sobic002G229800--Sobic009G254400 Sobic002G229800--Sobic003G301200 Sobic006G177000 Sobic006G177000 Sobic001G273100--Sobic006G177000 Sobic001G273100--Sobic004G336700 Sobic001G273100--Sobic010G191100 Sobic001G534300 Sobic001G534300 Sobic001G273100--Sobic001G534300 Sobic001G273100--Sobic006G163600 Sobic001G273100--Sobic002G202500 Sobic002G412400 Sobic002G412400 Sobic001G273100--Sobic002G412400 Sobic001G273100--Sobic002G229800 Sobic001G273100--Sobic003G325400
Octagon: transcription factors


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