Gene annotation
Transcriptome id Sobic.007G068500.1
Synonym Sb07g005420
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
polyphenol oxidase, putative, expressed
UniProt C5YIC4
Pfam PF00264 PF12142 PF12143
Panther DB PTHR11474:SF16 PTHR11474
NCBI CDD -
KEGG Orthology K00422; polyphenol oxidase
Gene Ontology GO:0008152; metabolic process GO:0016491oxidoreductase activity GO:0004097catechol oxidase activity


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os01g58100.1 : polyphenol oxidase, putative, expressed
MaizeGDB (Corn) Zm00025a054799 , Zm00025a029962
Brachypodium -
Barley -
Wheat TraesCS2B02G491100 , TraesCS2B02G491400 , TraesCS2D02G468200 , TraesCS2A02G468200 , TraesCS2A02G468500 , TraesCS2B02G491000 , TraesCS7A02G054500 , TraesCS2D02G468600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G191100 helix-loop-helix DNA-binding, putative, expressed -
2 Sobic.010G136500 expressed protein -
3 Sobic.002G229800 DUF617 domain containing protein, expressed -
4 Sobic.008G137500 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
5 Sobic.006G108000 formin, putative, expressed -
6 Sobic.004G155900 heavy metal-associated domain containing protein, expressed -
7 Sobic.001G331100 expressed protein -
8 Sobic.009G254400 polygalacturonase inhibitor 1 precursor, putative, expressed -
9 Sobic.004G066300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.007G019600 expressed protein -
11 Sobic.006G278800 expressed protein -
12 Sobic.003G301200 expressed protein -
13 Sobic.009G203200 pectinesterase, putative, expressed K01051: pectinesterase
14 Sobic.007G162000 carboxyl-terminal peptidase, putative, expressed -
15 Sobic.001G247000 MBTB51 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
16 Sobic.005G131900 inducer of CBF expression 1, putative, expressed -
17 Sobic.004G115600 HMG1/2, putative, expressed K09273: upstream-binding transcription factor
18 Sobic.001G253900 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
19 Sobic.001G273100 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
20 Sobic.007G081300 peptide transporter PTR2, putative, expressed -


Gene co-expression network
sample Sobic007G068500 Sobic007G068500 Sobic010G191100 Sobic010G191100 Sobic007G068500--Sobic010G191100 Sobic010G136500 Sobic010G136500 Sobic007G068500--Sobic010G136500 Sobic002G229800 Sobic002G229800 Sobic007G068500--Sobic002G229800 Sobic008G137500 Sobic008G137500 Sobic007G068500--Sobic008G137500 Sobic006G108000 Sobic006G108000 Sobic007G068500--Sobic006G108000 Sobic004G155900 Sobic004G155900 Sobic007G068500--Sobic004G155900 Sobic001G331100 Sobic001G331100 Sobic007G068500--Sobic001G331100 Sobic009G254400 Sobic009G254400 Sobic007G068500--Sobic009G254400 Sobic004G066300 Sobic004G066300 Sobic007G068500--Sobic004G066300 Sobic010G191100--Sobic008G137500 Sobic010G191100--Sobic004G155900 Sobic009G070500 Sobic009G070500 Sobic010G191100--Sobic009G070500 Sobic002G154300 Sobic002G154300 Sobic010G191100--Sobic002G154300 Sobic006G163600 Sobic006G163600 Sobic010G191100--Sobic006G163600 Sobic010G246500 Sobic010G246500 Sobic010G191100--Sobic010G246500 Sobic003G301200 Sobic003G301200 Sobic010G191100--Sobic003G301200 Sobic010G191100--Sobic002G229800 Sobic001G273100 Sobic001G273100 Sobic010G191100--Sobic001G273100 Sobic010G136500--Sobic008G137500 Sobic006G228100 Sobic006G228100 Sobic010G136500--Sobic006G228100 Sobic010G136500--Sobic010G246500 Sobic010G136500--Sobic003G301200 Sobic004G225400 Sobic004G225400 Sobic010G136500--Sobic004G225400 Sobic010G136500--Sobic006G163600 Sobic009G070000 Sobic009G070000 Sobic010G136500--Sobic009G070000 Sobic010G136500--Sobic010G191100 Sobic010G136500--Sobic004G155900 Sobic006G278800 Sobic006G278800 Sobic002G229800--Sobic006G278800 Sobic002G229800--Sobic004G155900 Sobic002G229800--Sobic006G108000 Sobic001G474300 Sobic001G474300 Sobic002G229800--Sobic001G474300 Sobic002G229800--Sobic010G191100 Sobic004G336700 Sobic004G336700 Sobic002G229800--Sobic004G336700 Sobic008G145300 Sobic008G145300 Sobic002G229800--Sobic008G145300 Sobic002G229800--Sobic009G254400 Sobic002G229800--Sobic003G301200 Sobic008G137500--Sobic010G191100 Sobic005G111600 Sobic005G111600 Sobic008G137500--Sobic005G111600 Sobic002G408500 Sobic002G408500 Sobic008G137500--Sobic002G408500 Sobic009G229100 Sobic009G229100 Sobic008G137500--Sobic009G229100 Sobic008G137500--Sobic006G228100 Sobic008G137500--Sobic009G070000 Sobic008G137500--Sobic004G155900 Sobic008G137500--Sobic010G246500 Sobic008G137500--Sobic002G154300 Sobic003G406500 Sobic003G406500 Sobic006G108000--Sobic003G406500 Sobic006G108000--Sobic001G331100 Sobic004G115600 Sobic004G115600 Sobic006G108000--Sobic004G115600 Sobic008G163800 Sobic008G163800 Sobic006G108000--Sobic008G163800 Sobic006G245200 Sobic006G245200 Sobic006G108000--Sobic006G245200 Sobic002G221400 Sobic002G221400 Sobic006G108000--Sobic002G221400 Sobic006G108000--Sobic009G254400 Sobic003G040100 Sobic003G040100 Sobic006G108000--Sobic003G040100 Sobic007G153300 Sobic007G153300 Sobic006G108000--Sobic007G153300 Sobic003G235800 Sobic003G235800 Sobic004G155900--Sobic003G235800 Sobic004G155900--Sobic003G301200 Sobic004G155900--Sobic010G191100 Sobic002G416000 Sobic002G416000 Sobic004G155900--Sobic002G416000 Sobic004G155900--Sobic002G229800 Sobic004G155900--Sobic008G137500 Sobic007G081300 Sobic007G081300 Sobic004G155900--Sobic007G081300 Sobic010G189800 Sobic010G189800 Sobic004G155900--Sobic010G189800 Sobic006G278400 Sobic006G278400 Sobic004G155900--Sobic006G278400 Sobic001G331100--Sobic004G115600 Sobic001G331100--Sobic006G108000 Sobic002G279300 Sobic002G279300 Sobic001G331100--Sobic002G279300 Sobic001G331100--Sobic009G254400 Sobic006G155900 Sobic006G155900 Sobic001G331100--Sobic006G155900 Sobic001G331100--Sobic008G163800 Sobic001G331100--Sobic003G406500 Sobic001G331100--Sobic003G040100 Sobic001G263500 Sobic001G263500 Sobic001G331100--Sobic001G263500 Sobic009G254400--Sobic001G263500 Sobic009G254400--Sobic003G406500 Sobic009G254400--Sobic008G163800 Sobic002G330800 Sobic002G330800 Sobic009G254400--Sobic002G330800 Sobic009G254400--Sobic001G331100 Sobic010G179000 Sobic010G179000 Sobic009G254400--Sobic010G179000 Sobic009G254400--Sobic006G108000 Sobic009G254400--Sobic006G278400 Sobic006G079100 Sobic006G079100 Sobic009G254400--Sobic006G079100 Sobic001G030200 Sobic001G030200 Sobic004G066300--Sobic001G030200 Sobic004G353900 Sobic004G353900 Sobic004G066300--Sobic004G353900 Sobic008G131200 Sobic008G131200 Sobic004G066300--Sobic008G131200 Sobic001G115800 Sobic001G115800 Sobic004G066300--Sobic001G115800 SobicK044200 SobicK044200 Sobic004G066300--SobicK044200 Sobic010G208000 Sobic010G208000 Sobic004G066300--Sobic010G208000 Sobic004G297800 Sobic004G297800 Sobic004G066300--Sobic004G297800 Sobic006G247500 Sobic006G247500 Sobic004G066300--Sobic006G247500 Sobic009G154000 Sobic009G154000 Sobic004G066300--Sobic009G154000
Octagon: transcription factors


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