Gene annotation
Transcriptome id Sobic.004G115600.1,Sobic.004G115600.2
Synonym Sb04g009610
Functional annotation HMG1/2, putative, expressed
UniProt C5XZH3
Pfam PF00505
Panther DB PTHR13711 PTHR13711:SF228 PTHR13711:SF228 PTHR13711
NCBI CDD KOG0381; HMG box-containing protein
KEGG Orthology K09273; upstream-binding transcription factor
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G23800 : HMG (high mobility group) box protein
RAP-DB (Rice) LOC_Os02g15810.1 : HMG1/2, putative, expressed
MaizeGDB (Corn) Zm00025a019914
Brachypodium KQJ94284
Barley HORVU2Hr1G102930.5 , HORVU2Hr1G102930.4 , HORVU2Hr1G102930.7 , HORVU2Hr1G102930.6 , HORVU2Hr1G102930.1 , HORVU2Hr1G102930.3 , HORVU2Hr1G102930.2
Wheat TraesCS2B02G466000 , TraesCS2A02G445000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G279300 tetratricopeptide repeat domain containing protein, expressed -
2 Sobic.001G331100 expressed protein -
3 Sobic.006G278400 ZOS4-14 - C2H2 zinc finger protein, expressed -
4 Sobic.006G108000 formin, putative, expressed -
5 Sobic.004G227000 expressed protein -
6 Sobic.001G458900 targeting protein-related, putative, expressed -
7 Sobic.003G301200 expressed protein -
8 Sobic.003G300100 bZIP transcription factor domain containing protein, expressed -
9 Sobic.003G047200 expressed protein -
10 Sobic.002G221400 ZOS9-14 - C2H2 zinc finger protein, expressed -
11 Sobic.001G098900 syntaxin-related protein, putative, expressed K08486: syntaxin 1B/2/3
12 Sobic.001G180300 expressed protein -
13 Sobic.002G293800 expressed protein -
14 Sobic.003G406500 antifreeze glycoprotein, putative, expressed -
15 Sobic.010G161300 receptor-like kinase, putative, expressed -
16 Sobic.007G081300 peptide transporter PTR2, putative, expressed -
17 Sobic.008G163800 expressed protein -
18 Sobic.009G254400 polygalacturonase inhibitor 1 precursor, putative, expressed -
19 Sobic.001G263500 glycosyl hydrolases family 17, putative, expressed -
20 Sobic.010G234800 expressed protein -


Gene co-expression network
sample Sobic004G115600 Sobic004G115600 Sobic002G279300 Sobic002G279300 Sobic004G115600--Sobic002G279300 Sobic001G331100 Sobic001G331100 Sobic004G115600--Sobic001G331100 Sobic006G278400 Sobic006G278400 Sobic004G115600--Sobic006G278400 Sobic006G108000 Sobic006G108000 Sobic004G115600--Sobic006G108000 Sobic004G227000 Sobic004G227000 Sobic004G115600--Sobic004G227000 Sobic001G458900 Sobic001G458900 Sobic004G115600--Sobic001G458900 Sobic003G301200 Sobic003G301200 Sobic004G115600--Sobic003G301200 Sobic003G300100 Sobic003G300100 Sobic004G115600--Sobic003G300100 Sobic003G047200 Sobic003G047200 Sobic004G115600--Sobic003G047200 Sobic002G279300--Sobic004G115600 Sobic002G279300--Sobic001G458900 Sobic002G279300--Sobic001G331100 Sobic002G279300--Sobic003G047200 Sobic002G279300--Sobic003G300100 Sobic002G293800 Sobic002G293800 Sobic002G279300--Sobic002G293800 Sobic001G098900 Sobic001G098900 Sobic002G279300--Sobic001G098900 Sobic001G077200 Sobic001G077200 Sobic002G279300--Sobic001G077200 Sobic010G234800 Sobic010G234800 Sobic002G279300--Sobic010G234800 Sobic001G331100--Sobic004G115600 Sobic001G331100--Sobic006G108000 Sobic001G331100--Sobic002G279300 Sobic009G254400 Sobic009G254400 Sobic001G331100--Sobic009G254400 Sobic006G155900 Sobic006G155900 Sobic001G331100--Sobic006G155900 Sobic008G163800 Sobic008G163800 Sobic001G331100--Sobic008G163800 Sobic003G406500 Sobic003G406500 Sobic001G331100--Sobic003G406500 Sobic003G040100 Sobic003G040100 Sobic001G331100--Sobic003G040100 Sobic001G263500 Sobic001G263500 Sobic001G331100--Sobic001G263500 Sobic006G278400--Sobic004G227000 Sobic001G180300 Sobic001G180300 Sobic006G278400--Sobic001G180300 Sobic006G278400--Sobic003G301200 Sobic008G163600 Sobic008G163600 Sobic006G278400--Sobic008G163600 Sobic007G081300 Sobic007G081300 Sobic006G278400--Sobic007G081300 Sobic006G187600 Sobic006G187600 Sobic006G278400--Sobic006G187600 Sobic010G014200 Sobic010G014200 Sobic006G278400--Sobic010G014200 Sobic002G425900 Sobic002G425900 Sobic006G278400--Sobic002G425900 Sobic004G128600 Sobic004G128600 Sobic006G278400--Sobic004G128600 Sobic006G108000--Sobic003G406500 Sobic006G108000--Sobic001G331100 Sobic006G108000--Sobic004G115600 Sobic006G108000--Sobic008G163800 Sobic006G245200 Sobic006G245200 Sobic006G108000--Sobic006G245200 Sobic002G221400 Sobic002G221400 Sobic006G108000--Sobic002G221400 Sobic006G108000--Sobic009G254400 Sobic006G108000--Sobic003G040100 Sobic007G153300 Sobic007G153300 Sobic006G108000--Sobic007G153300 Sobic004G227000--Sobic006G278400 Sobic004G227000--Sobic001G180300 Sobic004G227000--Sobic002G425900 Sobic004G227000--Sobic006G187600 Sobic004G227000--Sobic004G128600 Sobic010G224800 Sobic010G224800 Sobic004G227000--Sobic010G224800 Sobic002G059200 Sobic002G059200 Sobic004G227000--Sobic002G059200 Sobic004G329100 Sobic004G329100 Sobic004G227000--Sobic004G329100 Sobic010G114400 Sobic010G114400 Sobic004G227000--Sobic010G114400 Sobic001G458900--Sobic002G279300 Sobic001G458900--Sobic003G047200 Sobic001G458900--Sobic002G293800 Sobic001G458900--Sobic010G234800 Sobic001G458900--Sobic004G115600 Sobic001G458900--Sobic001G098900 Sobic010G215300 Sobic010G215300 Sobic001G458900--Sobic010G215300 Sobic001G284900 Sobic001G284900 Sobic001G458900--Sobic001G284900 Sobic001G458900--Sobic001G077200 Sobic003G301200--Sobic007G081300 Sobic003G301200--Sobic006G278400 Sobic003G235800 Sobic003G235800 Sobic003G301200--Sobic003G235800 Sobic003G301200--Sobic001G180300 Sobic003G301200--Sobic004G227000 Sobic010G189800 Sobic010G189800 Sobic003G301200--Sobic010G189800 Sobic003G301200--Sobic008G163600 Sobic006G005000 Sobic006G005000 Sobic003G301200--Sobic006G005000 Sobic003G301200--Sobic006G187600 Sobic003G300100--Sobic002G279300 Sobic008G156900 Sobic008G156900 Sobic003G300100--Sobic008G156900 Sobic001G397700 Sobic001G397700 Sobic003G300100--Sobic001G397700 Sobic003G300100--Sobic004G115600 Sobic003G300100--Sobic001G331100 Sobic001G253900 Sobic001G253900 Sobic003G300100--Sobic001G253900 Sobic003G300100--Sobic001G458900 Sobic008G083300 Sobic008G083300 Sobic003G300100--Sobic008G083300 Sobic001G451800 Sobic001G451800 Sobic003G300100--Sobic001G451800 Sobic003G047200--Sobic010G234800 Sobic003G047200--Sobic001G098900 Sobic003G047200--Sobic010G215300 Sobic003G047200--Sobic001G458900 Sobic003G047200--Sobic001G284900 Sobic003G414400 Sobic003G414400 Sobic003G047200--Sobic003G414400 Sobic003G047200--Sobic006G155900 Sobic010G202100 Sobic010G202100 Sobic003G047200--Sobic010G202100 Sobic003G047200--Sobic002G279300
Octagon: transcription factors


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