Gene annotation
Transcriptome id Sobic.001G458900.1,Sobic.001G458900.2
Synonym Sb01g043070
Functional annotation targeting protein-related, putative, expressed
UniProt C5WSU9 , A0A1B6QPQ1
Pfam PF06886
Panther DB PTHR14326
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005874; microtubule GO:0005819spindle


Orthologs (automatic annotation)
TAIR AT5G15510 : TPX2 (targeting protein for Xklp2) protein family
RAP-DB (Rice) LOC_Os03g11400.1,LOC_Os03g11400.2 : targeting protein-related, putative, expressed
MaizeGDB (Corn) Zm00025a053095 , Zm00025a001276
Brachypodium -
Barley -
Wheat TraesCS4D02G248200 , TraesCS4A02G056100 , TraesCS4B02G248800
Populus -


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cDNA sequences
Sobic.001G458900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G279300 tetratricopeptide repeat domain containing protein, expressed -
2 Sobic.003G047200 expressed protein -
3 Sobic.002G293800 expressed protein -
4 Sobic.010G234800 expressed protein -
5 Sobic.004G115600 HMG1/2, putative, expressed K09273: upstream-binding transcription factor
6 Sobic.001G098900 syntaxin-related protein, putative, expressed K08486: syntaxin 1B/2/3
7 Sobic.010G215300 cyclin-dependent kinase B2-1, putative, expressed K07760: cyclin-dependent kinase
8 Sobic.001G284900 expressed protein -
9 Sobic.001G077200 BTBN10 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
10 Sobic.005G056800 FHA domain containing protein, putative, expressed -
11 Sobic.002G427100 TOPBP1B - Similar to DNA replication protein TOPBP1 from, expressed K10728: topoisomerase (DNA) II binding protein 1
12 Sobic.003G300100 bZIP transcription factor domain containing protein, expressed -
13 Sobic.003G414400 expressed protein -
14 Sobic.010G202100 expressed protein -
15 Sobic.001G540900 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
16 Sobic.001G331100 expressed protein -
17 Sobic.001G075400 expressed protein -
18 Sobic.001G140600 expressed protein -
19 Sobic.008G114500 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
20 Sobic.004G198200 expressed protein -


Gene co-expression network
sample Sobic001G458900 Sobic001G458900 Sobic002G279300 Sobic002G279300 Sobic001G458900--Sobic002G279300 Sobic003G047200 Sobic003G047200 Sobic001G458900--Sobic003G047200 Sobic002G293800 Sobic002G293800 Sobic001G458900--Sobic002G293800 Sobic010G234800 Sobic010G234800 Sobic001G458900--Sobic010G234800 Sobic004G115600 Sobic004G115600 Sobic001G458900--Sobic004G115600 Sobic001G098900 Sobic001G098900 Sobic001G458900--Sobic001G098900 Sobic010G215300 Sobic010G215300 Sobic001G458900--Sobic010G215300 Sobic001G284900 Sobic001G284900 Sobic001G458900--Sobic001G284900 Sobic001G077200 Sobic001G077200 Sobic001G458900--Sobic001G077200 Sobic002G279300--Sobic004G115600 Sobic002G279300--Sobic001G458900 Sobic001G331100 Sobic001G331100 Sobic002G279300--Sobic001G331100 Sobic002G279300--Sobic003G047200 Sobic003G300100 Sobic003G300100 Sobic002G279300--Sobic003G300100 Sobic002G279300--Sobic002G293800 Sobic002G279300--Sobic001G098900 Sobic002G279300--Sobic001G077200 Sobic002G279300--Sobic010G234800 Sobic003G047200--Sobic010G234800 Sobic003G047200--Sobic001G098900 Sobic003G047200--Sobic010G215300 Sobic003G047200--Sobic001G458900 Sobic003G047200--Sobic001G284900 Sobic003G414400 Sobic003G414400 Sobic003G047200--Sobic003G414400 Sobic006G155900 Sobic006G155900 Sobic003G047200--Sobic006G155900 Sobic010G202100 Sobic010G202100 Sobic003G047200--Sobic010G202100 Sobic003G047200--Sobic002G279300 Sobic002G293800--Sobic010G234800 Sobic002G293800--Sobic001G098900 Sobic002G293800--Sobic001G458900 Sobic002G293800--Sobic010G215300 Sobic002G293800--Sobic002G279300 Sobic008G114500 Sobic008G114500 Sobic002G293800--Sobic008G114500 Sobic002G293800--Sobic003G047200 Sobic002G293800--Sobic010G202100 Sobic002G293800--Sobic003G414400 Sobic010G234800--Sobic001G098900 Sobic010G234800--Sobic010G215300 Sobic010G234800--Sobic010G202100 Sobic010G234800--Sobic003G047200 Sobic010G234800--Sobic008G114500 Sobic010G234800--Sobic002G293800 Sobic007G017700 Sobic007G017700 Sobic010G234800--Sobic007G017700 Sobic010G234800--Sobic003G414400 Sobic001G140600 Sobic001G140600 Sobic010G234800--Sobic001G140600 Sobic004G115600--Sobic002G279300 Sobic004G115600--Sobic001G331100 Sobic006G278400 Sobic006G278400 Sobic004G115600--Sobic006G278400 Sobic006G108000 Sobic006G108000 Sobic004G115600--Sobic006G108000 Sobic004G227000 Sobic004G227000 Sobic004G115600--Sobic004G227000 Sobic004G115600--Sobic001G458900 Sobic003G301200 Sobic003G301200 Sobic004G115600--Sobic003G301200 Sobic004G115600--Sobic003G300100 Sobic004G115600--Sobic003G047200 Sobic001G098900--Sobic010G215300 Sobic001G098900--Sobic010G234800 Sobic001G098900--Sobic010G202100 Sobic001G244400 Sobic001G244400 Sobic001G098900--Sobic001G244400 Sobic001G098900--Sobic003G047200 Sobic001G098900--Sobic003G414400 Sobic001G098900--Sobic002G293800 Sobic001G098900--Sobic008G114500 Sobic001G098900--Sobic006G155900 Sobic010G215300--Sobic001G098900 Sobic010G215300--Sobic010G234800 Sobic010G215300--Sobic003G414400 Sobic010G215300--Sobic010G202100 Sobic010G215300--Sobic001G140600 Sobic010G215300--Sobic003G047200 Sobic010G215300--Sobic008G114500 Sobic001G540900 Sobic001G540900 Sobic010G215300--Sobic001G540900 Sobic010G215300--Sobic001G284900 Sobic001G284900--Sobic003G414400 Sobic005G056800 Sobic005G056800 Sobic001G284900--Sobic005G056800 Sobic001G284900--Sobic003G047200 Sobic001G284900--Sobic010G215300 Sobic004G271300 Sobic004G271300 Sobic001G284900--Sobic004G271300 Sobic009G025400 Sobic009G025400 Sobic001G284900--Sobic009G025400 Sobic001G427400 Sobic001G427400 Sobic001G284900--Sobic001G427400 Sobic010G017400 Sobic010G017400 Sobic001G284900--Sobic010G017400 Sobic001G284900--Sobic001G098900 Sobic001G077200--Sobic001G458900 Sobic001G077200--Sobic002G279300 Sobic001G077200--Sobic002G293800 Sobic001G077200--Sobic004G115600 Sobic001G077200--Sobic003G300100 Sobic002G139200 Sobic002G139200 Sobic001G077200--Sobic002G139200 Sobic001G077200--Sobic001G284900 Sobic001G077200--Sobic003G047200 Sobic003G387600 Sobic003G387600 Sobic001G077200--Sobic003G387600
Octagon: transcription factors


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