Gene annotation
Transcriptome id Sobic.001G098900.1
Synonym SYP111, KN, ATSYP111, Sb01g008840
Functional annotation syntaxin-related protein, putative, expressed
UniProt A0A1B6QI70
Pfam PF05739 PF00804
Panther DB PTHR19957 PTHR19957:SF91
NCBI CDD KOG0810; SNARE protein Syntaxin 1 and related proteins
KEGG Orthology K08486; syntaxin 1B/2/3
Gene Ontology GO:0005515; protein binding GO:0016020membrane


Orthologs (automatic annotation)
TAIR AT1G08560 : syntaxin of plants 111
RAP-DB (Rice) LOC_Os03g52650.1 : syntaxin-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a008047 , Zm00025a016859
Brachypodium KQK13335
Barley HORVU4Hr1G011180.1 , HORVU4Hr1G011180.2
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G215300 cyclin-dependent kinase B2-1, putative, expressed K07760: cyclin-dependent kinase
2 Sobic.010G234800 expressed protein -
3 Sobic.010G202100 expressed protein -
4 Sobic.001G244400 IQ calmodulin-binding motif family protein, putative, expressed -
5 Sobic.003G047200 expressed protein -
6 Sobic.003G414400 expressed protein -
7 Sobic.002G293800 expressed protein -
8 Sobic.008G114500 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
9 Sobic.006G155900 ulp1 protease family, C-terminal catalytic domain containing protein, expressed -
10 Sobic.001G458900 targeting protein-related, putative, expressed -
11 Sobic.001G284900 expressed protein -
12 Sobic.009G064600 phototropic-responsive NPH3 family protein, putative, expressed -
13 Sobic.007G017700 IQ calmodulin-binding motif domain containing protein, expressed -
14 Sobic.002G279300 tetratricopeptide repeat domain containing protein, expressed -
15 Sobic.009G190400 expressed protein -
16 Sobic.001G070200 - -
17 Sobic.001G140600 expressed protein -
18 Sobic.004G115600 HMG1/2, putative, expressed K09273: upstream-binding transcription factor
19 Sobic.004G205300 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
20 Sobic.001G496700 IQ calmodulin-binding motif family protein, putative, expressed -


Gene co-expression network
sample Sobic001G098900 Sobic001G098900 Sobic010G215300 Sobic010G215300 Sobic001G098900--Sobic010G215300 Sobic010G234800 Sobic010G234800 Sobic001G098900--Sobic010G234800 Sobic010G202100 Sobic010G202100 Sobic001G098900--Sobic010G202100 Sobic001G244400 Sobic001G244400 Sobic001G098900--Sobic001G244400 Sobic003G047200 Sobic003G047200 Sobic001G098900--Sobic003G047200 Sobic003G414400 Sobic003G414400 Sobic001G098900--Sobic003G414400 Sobic002G293800 Sobic002G293800 Sobic001G098900--Sobic002G293800 Sobic008G114500 Sobic008G114500 Sobic001G098900--Sobic008G114500 Sobic006G155900 Sobic006G155900 Sobic001G098900--Sobic006G155900 Sobic010G215300--Sobic001G098900 Sobic010G215300--Sobic010G234800 Sobic010G215300--Sobic003G414400 Sobic010G215300--Sobic010G202100 Sobic001G140600 Sobic001G140600 Sobic010G215300--Sobic001G140600 Sobic010G215300--Sobic003G047200 Sobic010G215300--Sobic008G114500 Sobic001G540900 Sobic001G540900 Sobic010G215300--Sobic001G540900 Sobic001G284900 Sobic001G284900 Sobic010G215300--Sobic001G284900 Sobic010G234800--Sobic001G098900 Sobic010G234800--Sobic010G215300 Sobic010G234800--Sobic010G202100 Sobic010G234800--Sobic003G047200 Sobic010G234800--Sobic008G114500 Sobic010G234800--Sobic002G293800 Sobic007G017700 Sobic007G017700 Sobic010G234800--Sobic007G017700 Sobic010G234800--Sobic003G414400 Sobic010G234800--Sobic001G140600 Sobic010G202100--Sobic010G215300 Sobic010G202100--Sobic010G234800 Sobic010G202100--Sobic001G098900 Sobic010G202100--Sobic007G017700 Sobic010G202100--Sobic003G414400 Sobic009G025400 Sobic009G025400 Sobic010G202100--Sobic009G025400 Sobic010G202100--Sobic003G047200 Sobic006G201300 Sobic006G201300 Sobic010G202100--Sobic006G201300 Sobic010G202100--Sobic008G114500 Sobic001G244400--Sobic001G098900 Sobic009G064600 Sobic009G064600 Sobic001G244400--Sobic009G064600 Sobic001G244400--Sobic003G414400 Sobic001G244400--Sobic010G215300 Sobic001G244400--Sobic006G155900 Sobic001G244400--Sobic010G202100 Sobic009G190400 Sobic009G190400 Sobic001G244400--Sobic009G190400 Sobic001G244400--Sobic010G234800 Sobic001G244400--Sobic003G047200 Sobic003G047200--Sobic010G234800 Sobic003G047200--Sobic001G098900 Sobic003G047200--Sobic010G215300 Sobic001G458900 Sobic001G458900 Sobic003G047200--Sobic001G458900 Sobic003G047200--Sobic001G284900 Sobic003G047200--Sobic003G414400 Sobic003G047200--Sobic006G155900 Sobic003G047200--Sobic010G202100 Sobic002G279300 Sobic002G279300 Sobic003G047200--Sobic002G279300 Sobic003G414400--Sobic001G284900 Sobic003G414400--Sobic010G215300 Sobic003G414400--Sobic001G098900 Sobic003G414400--Sobic010G202100 Sobic003G414400--Sobic003G047200 Sobic003G414400--Sobic010G234800 Sobic003G414400--Sobic006G155900 Sobic001G070200 Sobic001G070200 Sobic003G414400--Sobic001G070200 Sobic004G271300 Sobic004G271300 Sobic003G414400--Sobic004G271300 Sobic002G293800--Sobic010G234800 Sobic002G293800--Sobic001G098900 Sobic002G293800--Sobic001G458900 Sobic002G293800--Sobic010G215300 Sobic002G293800--Sobic002G279300 Sobic002G293800--Sobic008G114500 Sobic002G293800--Sobic003G047200 Sobic002G293800--Sobic010G202100 Sobic002G293800--Sobic003G414400 Sobic008G114500--Sobic010G234800 Sobic008G114500--Sobic010G215300 Sobic004G205300 Sobic004G205300 Sobic008G114500--Sobic004G205300 Sobic008G114500--Sobic007G017700 Sobic008G114500--Sobic001G098900 Sobic008G114500--Sobic010G202100 Sobic008G114500--Sobic002G293800 Sobic008G114500--Sobic003G414400 Sobic004G279601 Sobic004G279601 Sobic008G114500--Sobic004G279601 Sobic006G155900--Sobic009G190400 Sobic004G198200 Sobic004G198200 Sobic006G155900--Sobic004G198200 Sobic003G040100 Sobic003G040100 Sobic006G155900--Sobic003G040100 Sobic001G494300 Sobic001G494300 Sobic006G155900--Sobic001G494300 Sobic008G020500 Sobic008G020500 Sobic006G155900--Sobic008G020500 Sobic006G155900--Sobic003G047200 Sobic006G155900--Sobic003G414400 Sobic006G155900--Sobic001G070200 Sobic001G331100 Sobic001G331100 Sobic006G155900--Sobic001G331100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.