Gene annotation
Transcriptome id Sobic.008G114500.1
Synonym HTA3, H2AXB, Sb08g016830, G-H2AX, GAMMA-H2AX
Functional annotation Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
UniProt C5YP98
Pfam PF00125 PF16211
Panther DB PTHR23430
NCBI CDD KOG1756; Histone 2A
KEGG Orthology K11251; histone H2A
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT1G54690 : gamma histone variant H2AX
RAP-DB (Rice) LOC_Os12g34510.1 : Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a045260 , Zm00025a047800 , Zm00025a014855 , Zm00025a054387 , Zm00025a014436 , Zm00025a007941 , Zm00025a040905
Brachypodium KQJ86512 , KQK13476 , KQK15863
Barley HORVU6Hr1G092390.1 , HORVU5Hr1G026650.6 , HORVU5Hr1G026650.7 , HORVU5Hr1G026650.4 , HORVU5Hr1G026650.5 , HORVU5Hr1G026650.2 , HORVU5Hr1G026650.3 , HORVU5Hr1G026650.1 , HORVU7Hr1G112470.1 , HORVU7Hr1G112470.2 , HORVU7Hr1G112470.3 , HORVU6Hr1G092280.1 , HORVU6Hr1G092280.2 , HORVU2Hr1G043860.2 , HORVU2Hr1G043860.1 , HORVU4Hr1G008800.2 , HORVU4Hr1G008800.1
Wheat TraesCS2D02G220400 , TraesCS5A02G098300 , TraesCS4D02G053100 , TraesCS2A02G214700 , TraesCS5D02G110600 , TraesCS2A02G214600 , TraesCS2B02G239700 , TraesCS5B02G103600 , TraesCS7D02G488500 , TraesCS6D02G040500 , TraesCS4B02G052900 , TraesCS2D02G220500 , TraesCS7D02G488600 , TraesCS6D02G062800 , TraesCS7B02G408300 , TraesCS3B02G611300 , TraesCS2B02G239600
Populus -


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cDNA sequences
Sobic.008G114500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G234800 expressed protein -
2 Sobic.010G215300 cyclin-dependent kinase B2-1, putative, expressed K07760: cyclin-dependent kinase
3 Sobic.004G205300 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
4 Sobic.007G017700 IQ calmodulin-binding motif domain containing protein, expressed -
5 Sobic.001G098900 syntaxin-related protein, putative, expressed K08486: syntaxin 1B/2/3
6 Sobic.010G202100 expressed protein -
7 Sobic.002G293800 expressed protein -
8 Sobic.003G414400 expressed protein -
9 Sobic.004G279601 - K11254: histone H4
10 Sobic.003G047200 expressed protein -
11 Sobic.007G207700 cyclin-dependent kinase B2-1, putative, expressed K07760: cyclin-dependent kinase
12 Sobic.001G540900 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
13 Sobic.007G000500 HMG1/2, putative, expressed -
14 Sobic.001G070200 - -
15 Sobic.006G134200 expressed protein -
16 Sobic.001G458900 targeting protein-related, putative, expressed -
17 Sobic.001G496700 IQ calmodulin-binding motif family protein, putative, expressed -
18 Sobic.007G008300 WD domain, G-beta repeat domain containing protein, expressed K10751: chromatin assembly factor 1 subunit B
19 Sobic.006G155900 ulp1 protease family, C-terminal catalytic domain containing protein, expressed -
20 Sobic.004G115600 HMG1/2, putative, expressed K09273: upstream-binding transcription factor


Gene co-expression network
sample Sobic008G114500 Sobic008G114500 Sobic010G234800 Sobic010G234800 Sobic008G114500--Sobic010G234800 Sobic010G215300 Sobic010G215300 Sobic008G114500--Sobic010G215300 Sobic004G205300 Sobic004G205300 Sobic008G114500--Sobic004G205300 Sobic007G017700 Sobic007G017700 Sobic008G114500--Sobic007G017700 Sobic001G098900 Sobic001G098900 Sobic008G114500--Sobic001G098900 Sobic010G202100 Sobic010G202100 Sobic008G114500--Sobic010G202100 Sobic002G293800 Sobic002G293800 Sobic008G114500--Sobic002G293800 Sobic003G414400 Sobic003G414400 Sobic008G114500--Sobic003G414400 Sobic004G279601 Sobic004G279601 Sobic008G114500--Sobic004G279601 Sobic010G234800--Sobic001G098900 Sobic010G234800--Sobic010G215300 Sobic010G234800--Sobic010G202100 Sobic003G047200 Sobic003G047200 Sobic010G234800--Sobic003G047200 Sobic010G234800--Sobic008G114500 Sobic010G234800--Sobic002G293800 Sobic010G234800--Sobic007G017700 Sobic010G234800--Sobic003G414400 Sobic001G140600 Sobic001G140600 Sobic010G234800--Sobic001G140600 Sobic010G215300--Sobic001G098900 Sobic010G215300--Sobic010G234800 Sobic010G215300--Sobic003G414400 Sobic010G215300--Sobic010G202100 Sobic010G215300--Sobic001G140600 Sobic010G215300--Sobic003G047200 Sobic010G215300--Sobic008G114500 Sobic001G540900 Sobic001G540900 Sobic010G215300--Sobic001G540900 Sobic001G284900 Sobic001G284900 Sobic010G215300--Sobic001G284900 Sobic004G205300--Sobic008G114500 Sobic004G205300--Sobic004G279601 Sobic001G070200 Sobic001G070200 Sobic004G205300--Sobic001G070200 Sobic004G205300--Sobic010G215300 Sobic004G205300--Sobic002G293800 Sobic004G205300--Sobic001G098900 Sobic004G205300--Sobic003G414400 Sobic004G205300--Sobic010G234800 Sobic004G205300--Sobic007G017700 Sobic003G387700 Sobic003G387700 Sobic007G017700--Sobic003G387700 Sobic002G289800 Sobic002G289800 Sobic007G017700--Sobic002G289800 Sobic007G207700 Sobic007G207700 Sobic007G017700--Sobic007G207700 Sobic007G017700--Sobic010G202100 Sobic006G134200 Sobic006G134200 Sobic007G017700--Sobic006G134200 Sobic007G017700--Sobic010G215300 Sobic001G091500 Sobic001G091500 Sobic007G017700--Sobic001G091500 Sobic007G017700--Sobic010G234800 Sobic007G017700--Sobic008G114500 Sobic001G098900--Sobic010G215300 Sobic001G098900--Sobic010G234800 Sobic001G098900--Sobic010G202100 Sobic001G244400 Sobic001G244400 Sobic001G098900--Sobic001G244400 Sobic001G098900--Sobic003G047200 Sobic001G098900--Sobic003G414400 Sobic001G098900--Sobic002G293800 Sobic001G098900--Sobic008G114500 Sobic006G155900 Sobic006G155900 Sobic001G098900--Sobic006G155900 Sobic010G202100--Sobic010G215300 Sobic010G202100--Sobic010G234800 Sobic010G202100--Sobic001G098900 Sobic010G202100--Sobic007G017700 Sobic010G202100--Sobic003G414400 Sobic009G025400 Sobic009G025400 Sobic010G202100--Sobic009G025400 Sobic010G202100--Sobic003G047200 Sobic006G201300 Sobic006G201300 Sobic010G202100--Sobic006G201300 Sobic010G202100--Sobic008G114500 Sobic002G293800--Sobic010G234800 Sobic002G293800--Sobic001G098900 Sobic001G458900 Sobic001G458900 Sobic002G293800--Sobic001G458900 Sobic002G293800--Sobic010G215300 Sobic002G279300 Sobic002G279300 Sobic002G293800--Sobic002G279300 Sobic002G293800--Sobic008G114500 Sobic002G293800--Sobic003G047200 Sobic002G293800--Sobic010G202100 Sobic002G293800--Sobic003G414400 Sobic003G414400--Sobic001G284900 Sobic003G414400--Sobic010G215300 Sobic003G414400--Sobic001G098900 Sobic003G414400--Sobic010G202100 Sobic003G414400--Sobic003G047200 Sobic003G414400--Sobic010G234800 Sobic003G414400--Sobic006G155900 Sobic003G414400--Sobic001G070200 Sobic004G271300 Sobic004G271300 Sobic003G414400--Sobic004G271300 Sobic001G205000 Sobic001G205000 Sobic004G279601--Sobic001G205000 Sobic006G076400 Sobic006G076400 Sobic004G279601--Sobic006G076400 Sobic004G285900 Sobic004G285900 Sobic004G279601--Sobic004G285900 Sobic001G078600 Sobic001G078600 Sobic004G279601--Sobic001G078600 Sobic006G081800 Sobic006G081800 Sobic004G279601--Sobic006G081800 Sobic004G279601--Sobic004G205300 Sobic007G214700 Sobic007G214700 Sobic004G279601--Sobic007G214700 Sobic003G057100 Sobic003G057100 Sobic004G279601--Sobic003G057100 Sobic001G261549 Sobic001G261549 Sobic004G279601--Sobic001G261549
Octagon: transcription factors


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