Gene annotation
Transcriptome id Sobic.004G205300.1
Synonym Sb04g025140, HTA11
Functional annotation Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
UniProt C5XX54
Pfam PF16211 PF00125
Panther DB PTHR23430
NCBI CDD KOG1757; Histone 2A
KEGG Orthology K11251; histone H2A
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT3G54560 : histone H2A 11
RAP-DB (Rice) LOC_Os03g53190.1 : Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a000771
Brachypodium KQJ96739 , KQJ96738
Barley HORVU5Hr1G094290.8 , HORVU5Hr1G094290.7 , HORVU5Hr1G094290.5 , HORVU5Hr1G094290.3 , HORVU5Hr1G094290.1
Wheat TraesCS5D02G392100 , TraesCS1A02G132400 , TraesCS1B02G154500 , TraesCS7D02G246600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G114500 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
2 Sobic.004G279601 - K11254: histone H4
3 Sobic.001G070200 - -
4 Sobic.010G215300 cyclin-dependent kinase B2-1, putative, expressed K07760: cyclin-dependent kinase
5 Sobic.002G293800 expressed protein -
6 Sobic.001G098900 syntaxin-related protein, putative, expressed K08486: syntaxin 1B/2/3
7 Sobic.003G414400 expressed protein -
8 Sobic.010G234800 expressed protein -
9 Sobic.007G017700 IQ calmodulin-binding motif domain containing protein, expressed -
10 Sobic.009G167500 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
11 Sobic.001G540900 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
12 Sobic.006G056100 expressed protein -
13 Sobic.004G198200 expressed protein -
14 Sobic.001G300400 expansin precursor, putative, expressed -
15 Sobic.007G008300 WD domain, G-beta repeat domain containing protein, expressed K10751: chromatin assembly factor 1 subunit B
16 Sobic.010G202100 expressed protein -
17 Sobic.004G168800 expressed protein -
18 Sobic.006G147900 expressed protein -
19 Sobic.006G134200 expressed protein -
20 Sobic.001G458900 targeting protein-related, putative, expressed -


Gene co-expression network
sample Sobic004G205300 Sobic004G205300 Sobic008G114500 Sobic008G114500 Sobic004G205300--Sobic008G114500 Sobic004G279601 Sobic004G279601 Sobic004G205300--Sobic004G279601 Sobic001G070200 Sobic001G070200 Sobic004G205300--Sobic001G070200 Sobic010G215300 Sobic010G215300 Sobic004G205300--Sobic010G215300 Sobic002G293800 Sobic002G293800 Sobic004G205300--Sobic002G293800 Sobic001G098900 Sobic001G098900 Sobic004G205300--Sobic001G098900 Sobic003G414400 Sobic003G414400 Sobic004G205300--Sobic003G414400 Sobic010G234800 Sobic010G234800 Sobic004G205300--Sobic010G234800 Sobic007G017700 Sobic007G017700 Sobic004G205300--Sobic007G017700 Sobic008G114500--Sobic010G234800 Sobic008G114500--Sobic010G215300 Sobic008G114500--Sobic004G205300 Sobic008G114500--Sobic007G017700 Sobic008G114500--Sobic001G098900 Sobic010G202100 Sobic010G202100 Sobic008G114500--Sobic010G202100 Sobic008G114500--Sobic002G293800 Sobic008G114500--Sobic003G414400 Sobic008G114500--Sobic004G279601 Sobic001G205000 Sobic001G205000 Sobic004G279601--Sobic001G205000 Sobic006G076400 Sobic006G076400 Sobic004G279601--Sobic006G076400 Sobic004G285900 Sobic004G285900 Sobic004G279601--Sobic004G285900 Sobic001G078600 Sobic001G078600 Sobic004G279601--Sobic001G078600 Sobic006G081800 Sobic006G081800 Sobic004G279601--Sobic006G081800 Sobic004G279601--Sobic004G205300 Sobic007G214700 Sobic007G214700 Sobic004G279601--Sobic007G214700 Sobic003G057100 Sobic003G057100 Sobic004G279601--Sobic003G057100 Sobic001G261549 Sobic001G261549 Sobic004G279601--Sobic001G261549 Sobic004G198200 Sobic004G198200 Sobic001G070200--Sobic004G198200 Sobic006G155900 Sobic006G155900 Sobic001G070200--Sobic006G155900 Sobic001G070200--Sobic003G414400 Sobic006G176400 Sobic006G176400 Sobic001G070200--Sobic006G176400 Sobic009G081400 Sobic009G081400 Sobic001G070200--Sobic009G081400 Sobic001G070200--Sobic010G215300 Sobic004G133000 Sobic004G133000 Sobic001G070200--Sobic004G133000 Sobic008G020500 Sobic008G020500 Sobic001G070200--Sobic008G020500 Sobic009G190400 Sobic009G190400 Sobic001G070200--Sobic009G190400 Sobic010G215300--Sobic001G098900 Sobic010G215300--Sobic010G234800 Sobic010G215300--Sobic003G414400 Sobic010G215300--Sobic010G202100 Sobic001G140600 Sobic001G140600 Sobic010G215300--Sobic001G140600 Sobic003G047200 Sobic003G047200 Sobic010G215300--Sobic003G047200 Sobic010G215300--Sobic008G114500 Sobic001G540900 Sobic001G540900 Sobic010G215300--Sobic001G540900 Sobic001G284900 Sobic001G284900 Sobic010G215300--Sobic001G284900 Sobic002G293800--Sobic010G234800 Sobic002G293800--Sobic001G098900 Sobic001G458900 Sobic001G458900 Sobic002G293800--Sobic001G458900 Sobic002G293800--Sobic010G215300 Sobic002G279300 Sobic002G279300 Sobic002G293800--Sobic002G279300 Sobic002G293800--Sobic008G114500 Sobic002G293800--Sobic003G047200 Sobic002G293800--Sobic010G202100 Sobic002G293800--Sobic003G414400 Sobic001G098900--Sobic010G215300 Sobic001G098900--Sobic010G234800 Sobic001G098900--Sobic010G202100 Sobic001G244400 Sobic001G244400 Sobic001G098900--Sobic001G244400 Sobic001G098900--Sobic003G047200 Sobic001G098900--Sobic003G414400 Sobic001G098900--Sobic002G293800 Sobic001G098900--Sobic008G114500 Sobic001G098900--Sobic006G155900 Sobic003G414400--Sobic001G284900 Sobic003G414400--Sobic010G215300 Sobic003G414400--Sobic001G098900 Sobic003G414400--Sobic010G202100 Sobic003G414400--Sobic003G047200 Sobic003G414400--Sobic010G234800 Sobic003G414400--Sobic006G155900 Sobic003G414400--Sobic001G070200 Sobic004G271300 Sobic004G271300 Sobic003G414400--Sobic004G271300 Sobic010G234800--Sobic001G098900 Sobic010G234800--Sobic010G215300 Sobic010G234800--Sobic010G202100 Sobic010G234800--Sobic003G047200 Sobic010G234800--Sobic008G114500 Sobic010G234800--Sobic002G293800 Sobic010G234800--Sobic007G017700 Sobic010G234800--Sobic003G414400 Sobic010G234800--Sobic001G140600 Sobic003G387700 Sobic003G387700 Sobic007G017700--Sobic003G387700 Sobic002G289800 Sobic002G289800 Sobic007G017700--Sobic002G289800 Sobic007G207700 Sobic007G207700 Sobic007G017700--Sobic007G207700 Sobic007G017700--Sobic010G202100 Sobic006G134200 Sobic006G134200 Sobic007G017700--Sobic006G134200 Sobic007G017700--Sobic010G215300 Sobic001G091500 Sobic001G091500 Sobic007G017700--Sobic001G091500 Sobic007G017700--Sobic010G234800 Sobic007G017700--Sobic008G114500
Octagon: transcription factors


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