Gene annotation
Transcriptome id Sobic.001G300400.1
Synonym Sb01g029230, EXPB2, ATHEXPBETA1.4, ATEXPB2
Functional annotation expansin precursor, putative, expressed
UniProt C5WSE5
Pfam PF01357 PF03330
Panther DB PTHR31692:SF9 PTHR31692
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G65680 : expansin B2
RAP-DB (Rice) LOC_Os10g40730.1 : expansin precursor, putative, expressed
MaizeGDB (Corn) Zm00025a051985 , Zm00025a051983 , Zm00025a051980 , Zm00025a051976 , Zm00025a051978 , Zm00025a003327 , Zm00025a003339 , Zm00025a003332 , Zm00025a003330 , Zm00025a003331 , Zm00025a000113 , Zm00025a003251
Brachypodium KQK07389 , KQJ97767 , KQJ97764 , KQJ97762 , KQJ97768 , KQK24135 , KQK24134
Barley HORVU1Hr1G054240.1 , HORVU1Hr1G054240.2 , HORVU0Hr1G005490.2 , HORVU1Hr1G054200.1 , HORVU0Hr1G005490.1 , HORVU5Hr1G019100.10 , HORVU4Hr1G088080.8 , HORVU4Hr1G088080.9 , HORVU4Hr1G088080.2 , HORVU4Hr1G088080.3 , HORVU4Hr1G088080.1 , HORVU4Hr1G088080.6 , HORVU4Hr1G088080.7 , HORVU4Hr1G088080.4 , HORVU4Hr1G088080.5 , HORVU5Hr1G019100.8 , HORVU5Hr1G019100.9 , HORVU3Hr1G001920.1 , HORVU3Hr1G001920.3 , HORVU3Hr1G001920.2 , HORVU5Hr1G019100.1 , HORVU5Hr1G019100.2 , HORVU5Hr1G019100.3 , HORVU5Hr1G019100.4 , HORVU5Hr1G019100.5 , HORVU5Hr1G019100.6 , HORVU5Hr1G019100.7 , HORVU4Hr1G088140.3 , HORVU4Hr1G088140.2 , HORVU4Hr1G088140.1 , HORVU1Hr1G054250.9 , HORVU1Hr1G054250.8 , HORVU1Hr1G054250.3 , HORVU1Hr1G054250.2 , HORVU1Hr1G054250.1 , HORVU1Hr1G054250.7 , HORVU1Hr1G054250.6 , HORVU1Hr1G054250.5 , HORVU1Hr1G054250.4 , HORVU0Hr1G016380.2 , HORVU0Hr1G016380.3 , HORVU0Hr1G016380.4 , HORVU3Hr1G073140.1 , HORVU4Hr1G088080.10 , HORVU4Hr1G088080.11 , HORVU4Hr1G088080.12 , HORVU4Hr1G088080.13 , HORVU3Hr1G105170.1 , HORVU3Hr1G105520.2 , HORVU3Hr1G105520.1 , HORVU5Hr1G019100.12 , HORVU5Hr1G019100.11
Wheat TraesCS1D02G215400 , TraesCS1D02G215500 , TraesCS1D02G215500 , TraesCS5D02G086000 , TraesCS1D02G215100 , TraesCS1B02G226000 , TraesCS3D02G476800 , TraesCSU02G216000 , TraesCS5B02G079400 , TraesCS3B02G524500 , TraesCS6D02G037700 , TraesCS3A02G480000 , TraesCS1A02G212200 , TraesCS3D02G000500 , TraesCS1D02G215100 , TraesCSU02G085500 , TraesCS3D02G000400 , TraesCS3B02G014300 , TraesCS4D02G361700 , TraesCS5A02G538000 , TraesCS6D02G037500 , TraesCS1B02G225700 , TraesCS1B02G225700 , TraesCS5A02G537300 , TraesCS1B02G226100 , TraesCS1B02G226100 , TraesCS1B02G226000 , TraesCS6A02G032700 , TraesCS6B02G046100 , TraesCS3B02G014400 , TraesCS1A02G212000 , TraesCS6B02G046200 , TraesCS2A02G458900 , TraesCS1A02G212600 , TraesCS5A02G073100 , TraesCS1B02G225800 , TraesCS1A02G212400 , TraesCS3A02G011100 , TraesCS3A02G479900 , TraesCS4B02G375200 , TraesCS4B02G375600 , TraesCS6B02G046300 , TraesCS3B02G526800 , TraesCS6B02G046400 , TraesCS4D02G361900
Populus -


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cDNA sequences
Sobic.001G300400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G351100 DNA repair protein Rad51, putative, expressed K04482: DNA repair protein RAD51
2 Sobic.001G289900 AT hook motif domain containing protein, expressed -
3 Sobic.006G236800 ATEB1A-like microtubule associated protein, putative, expressed K10436: microtubule-associated protein, RP/EB family
4 Sobic.003G297200 lipase, putative, expressed -
5 Sobic.004G047100 EH domain-containing protein 1, putative, expressed K12483: EH domain-containing protein 1
6 Sobic.002G289800 HMG1/2, putative, expressed -
7 Sobic.002G426800 zinc finger, C3HC4 type domain containing protein, expressed -
8 Sobic.003G102000 expressed protein -
9 Sobic.001G091500 expressed protein -
10 Sobic.001G440900 LSM domain containing protein, expressed K11088: SNRPD3, small nuclear ribonucleoprotein D3
11 Sobic.002G246900 expressed protein -
12 Sobic.007G017700 IQ calmodulin-binding motif domain containing protein, expressed -
13 Sobic.002G284100 ATROPGEF7/ROPGEF7, putative, expressed -
14 Sobic.003G387700 expressed protein -
15 Sobic.007G214700 fasciclin domain containing protein, expressed -
16 Sobic.001G105800 OsFBX109 - F-box domain containing protein, expressed -
17 Sobic.006G102900 expressed protein -
18 Sobic.010G105400 chromosome condensation protein like, putative, expressed K06678: YCG1, condensin complex subunit 3
19 Sobic.004G327600 expressed protein -
20 Sobic.002G128000 receptor protein kinase, putative, expressed -


Gene co-expression network
sample Sobic001G300400 Sobic001G300400 Sobic002G351100 Sobic002G351100 Sobic001G300400--Sobic002G351100 Sobic001G289900 Sobic001G289900 Sobic001G300400--Sobic001G289900 Sobic006G236800 Sobic006G236800 Sobic001G300400--Sobic006G236800 Sobic003G297200 Sobic003G297200 Sobic001G300400--Sobic003G297200 Sobic004G047100 Sobic004G047100 Sobic001G300400--Sobic004G047100 Sobic002G289800 Sobic002G289800 Sobic001G300400--Sobic002G289800 Sobic002G426800 Sobic002G426800 Sobic001G300400--Sobic002G426800 Sobic003G102000 Sobic003G102000 Sobic001G300400--Sobic003G102000 Sobic001G091500 Sobic001G091500 Sobic001G300400--Sobic001G091500 Sobic002G351100--Sobic001G300400 Sobic002G351100--Sobic003G297200 Sobic001G521100 Sobic001G521100 Sobic002G351100--Sobic001G521100 Sobic003G244000 Sobic003G244000 Sobic002G351100--Sobic003G244000 Sobic002G315400 Sobic002G315400 Sobic002G351100--Sobic002G315400 Sobic009G194900 Sobic009G194900 Sobic002G351100--Sobic009G194900 Sobic001G440900 Sobic001G440900 Sobic002G351100--Sobic001G440900 Sobic002G246900 Sobic002G246900 Sobic002G351100--Sobic002G246900 Sobic001G238900 Sobic001G238900 Sobic002G351100--Sobic001G238900 Sobic010G105400 Sobic010G105400 Sobic001G289900--Sobic010G105400 Sobic001G289900--Sobic002G289800 Sobic007G132900 Sobic007G132900 Sobic001G289900--Sobic007G132900 Sobic003G387700 Sobic003G387700 Sobic001G289900--Sobic003G387700 Sobic001G289900--Sobic004G047100 Sobic001G398400 Sobic001G398400 Sobic001G289900--Sobic001G398400 Sobic004G273000 Sobic004G273000 Sobic001G289900--Sobic004G273000 Sobic001G289900--Sobic001G091500 Sobic001G289900--Sobic002G426800 Sobic001G025900 Sobic001G025900 Sobic006G236800--Sobic001G025900 Sobic004G328300 Sobic004G328300 Sobic006G236800--Sobic004G328300 Sobic002G113400 Sobic002G113400 Sobic006G236800--Sobic002G113400 Sobic006G236800--Sobic001G300400 Sobic006G236800--Sobic003G297200 Sobic002G271400 Sobic002G271400 Sobic006G236800--Sobic002G271400 Sobic007G084200 Sobic007G084200 Sobic006G236800--Sobic007G084200 Sobic006G236800--Sobic001G521100 Sobic009G138300 Sobic009G138300 Sobic006G236800--Sobic009G138300 Sobic003G297200--Sobic002G351100 Sobic003G297200--Sobic001G300400 Sobic003G297200--Sobic006G236800 Sobic003G297200--Sobic001G521100 Sobic003G297200--Sobic002G246900 Sobic003G297200--Sobic002G315400 Sobic003G297200--Sobic007G084200 Sobic003G297200--Sobic003G244000 Sobic002G190000 Sobic002G190000 Sobic003G297200--Sobic002G190000 Sobic004G047100--Sobic010G105400 Sobic005G144600 Sobic005G144600 Sobic004G047100--Sobic005G144600 Sobic009G181500 Sobic009G181500 Sobic004G047100--Sobic009G181500 Sobic004G047100--Sobic002G246900 Sobic004G047100--Sobic002G426800 Sobic003G179500 Sobic003G179500 Sobic004G047100--Sobic003G179500 Sobic004G047100--Sobic001G091500 Sobic006G116500 Sobic006G116500 Sobic004G047100--Sobic006G116500 Sobic004G047100--Sobic003G387700 Sobic002G289800--Sobic001G289900 Sobic007G017700 Sobic007G017700 Sobic002G289800--Sobic007G017700 Sobic003G316601 Sobic003G316601 Sobic002G289800--Sobic003G316601 Sobic004G237000 Sobic004G237000 Sobic002G289800--Sobic004G237000 Sobic004G327600 Sobic004G327600 Sobic002G289800--Sobic004G327600 Sobic002G289800--Sobic007G132900 Sobic010G222100 Sobic010G222100 Sobic002G289800--Sobic010G222100 Sobic002G289800--Sobic001G300400 Sobic006G081800 Sobic006G081800 Sobic002G289800--Sobic006G081800 Sobic002G426800--Sobic009G181500 Sobic002G426800--Sobic001G091500 Sobic002G426800--Sobic005G144600 Sobic002G426800--Sobic004G047100 Sobic003G260700 Sobic003G260700 Sobic002G426800--Sobic003G260700 Sobic001G078600 Sobic001G078600 Sobic002G426800--Sobic001G078600 Sobic003G314900 Sobic003G314900 Sobic002G426800--Sobic003G314900 Sobic003G444100 Sobic003G444100 Sobic002G426800--Sobic003G444100 Sobic002G426800--Sobic010G105400 Sobic008G125700 Sobic008G125700 Sobic003G102000--Sobic008G125700 Sobic003G102000--Sobic003G260700 Sobic010G119300 Sobic010G119300 Sobic003G102000--Sobic010G119300 Sobic004G339500 Sobic004G339500 Sobic003G102000--Sobic004G339500 Sobic008G114900 Sobic008G114900 Sobic003G102000--Sobic008G114900 Sobic004G257600 Sobic004G257600 Sobic003G102000--Sobic004G257600 Sobic004G198100 Sobic004G198100 Sobic003G102000--Sobic004G198100 Sobic008G006800 Sobic008G006800 Sobic003G102000--Sobic008G006800 Sobic002G313000 Sobic002G313000 Sobic003G102000--Sobic002G313000 Sobic001G091500--Sobic002G426800 Sobic001G091500--Sobic003G387700 Sobic009G120700 Sobic009G120700 Sobic001G091500--Sobic009G120700 Sobic001G091500--Sobic003G260700 Sobic001G091500--Sobic004G047100 Sobic002G222500 Sobic002G222500 Sobic001G091500--Sobic002G222500 Sobic001G091500--Sobic004G339500 Sobic001G091500--Sobic010G119300 Sobic001G091500--Sobic004G198100
Octagon: transcription factors


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