Gene annotation
Transcriptome id Sobic.002G351100.1
Synonym ATRAD51, RAD51, Sb02g037320
Functional annotation DNA repair protein Rad51, putative, expressed
UniProt C5XCD8
Pfam PF14520 PF13481
Panther DB PTHR22942 PTHR22942:SF45
NCBI CDD KOG1434; Meiotic recombination protein Dmc1
KEGG Orthology K04482; DNA repair protein RAD51
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G20850 : RAS associated with diabetes protein 51
RAP-DB (Rice) LOC_Os11g40150.1 : DNA repair protein Rad51, putative, expressed
MaizeGDB (Corn) Zm00025a025611 , Zm00025a048488
Brachypodium KQJ86674 , KQJ87825 , PNT63280
Barley HORVU7Hr1G091450.11 , HORVU7Hr1G091450.8 , HORVU7Hr1G091450.9 , HORVU7Hr1G091450.1 , HORVU7Hr1G091450.2 , HORVU7Hr1G091450.3 , HORVU7Hr1G091450.4 , HORVU7Hr1G091450.5 , HORVU7Hr1G091450.6 , HORVU7Hr1G091450.7 , HORVU7Hr1G091450.12 , HORVU7Hr1G091450.13 , HORVU7Hr1G091450.10 , HORVU7Hr1G091450.16 , HORVU7Hr1G091450.14 , HORVU7Hr1G091450.15
Wheat TraesCS7D02G381300 , TraesCS7A02G384800 , TraesCS7A02G384800 , TraesCS7B02G287700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G300400 expansin precursor, putative, expressed -
2 Sobic.003G297200 lipase, putative, expressed -
3 Sobic.001G521100 POLD2 - Putative DNA polymerase delta complex subunit, expressed K02328: DNA polymerase delta subunit 2
4 Sobic.003G244000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase
5 Sobic.002G315400 expressed protein -
6 Sobic.009G194900 glucan endo-1,3-beta-glucosidase-like protein 3 precursor, putative, expressed -
7 Sobic.001G440900 LSM domain containing protein, expressed K11088: SNRPD3, small nuclear ribonucleoprotein D3
8 Sobic.002G246900 expressed protein -
9 Sobic.001G238900 OsFBX386 - F-box domain containing protein, expressed -
10 Sobic.003G208800 aspartic proteinase, putative, expressed -
11 Sobic.009G172950 - K02541: DNA replication licensing factor MCM3
12 Sobic.002G284100 ATROPGEF7/ROPGEF7, putative, expressed -
13 Sobic.007G123400 heavy metal-associated domain containing protein, expressed -
14 Sobic.001G468000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF677 domain containing protein, putative, expressed -
15 Sobic.010G212700 tetraspanin family protein, putative, expressed -
16 Sobic.001G105800 OsFBX109 - F-box domain containing protein, expressed -
17 Sobic.004G047100 EH domain-containing protein 1, putative, expressed K12483: EH domain-containing protein 1
18 Sobic.001G146900 expressed protein -
19 Sobic.006G236800 ATEB1A-like microtubule associated protein, putative, expressed K10436: microtubule-associated protein, RP/EB family
20 Sobic.010G079100 lysM domain-containing GPI-anchored protein 1 precursor, putative, expressed -


Gene co-expression network
sample Sobic002G351100 Sobic002G351100 Sobic001G300400 Sobic001G300400 Sobic002G351100--Sobic001G300400 Sobic003G297200 Sobic003G297200 Sobic002G351100--Sobic003G297200 Sobic001G521100 Sobic001G521100 Sobic002G351100--Sobic001G521100 Sobic003G244000 Sobic003G244000 Sobic002G351100--Sobic003G244000 Sobic002G315400 Sobic002G315400 Sobic002G351100--Sobic002G315400 Sobic009G194900 Sobic009G194900 Sobic002G351100--Sobic009G194900 Sobic001G440900 Sobic001G440900 Sobic002G351100--Sobic001G440900 Sobic002G246900 Sobic002G246900 Sobic002G351100--Sobic002G246900 Sobic001G238900 Sobic001G238900 Sobic002G351100--Sobic001G238900 Sobic001G300400--Sobic002G351100 Sobic001G289900 Sobic001G289900 Sobic001G300400--Sobic001G289900 Sobic006G236800 Sobic006G236800 Sobic001G300400--Sobic006G236800 Sobic001G300400--Sobic003G297200 Sobic004G047100 Sobic004G047100 Sobic001G300400--Sobic004G047100 Sobic002G289800 Sobic002G289800 Sobic001G300400--Sobic002G289800 Sobic002G426800 Sobic002G426800 Sobic001G300400--Sobic002G426800 Sobic003G102000 Sobic003G102000 Sobic001G300400--Sobic003G102000 Sobic001G091500 Sobic001G091500 Sobic001G300400--Sobic001G091500 Sobic003G297200--Sobic002G351100 Sobic003G297200--Sobic001G300400 Sobic003G297200--Sobic006G236800 Sobic003G297200--Sobic001G521100 Sobic003G297200--Sobic002G246900 Sobic003G297200--Sobic002G315400 Sobic007G084200 Sobic007G084200 Sobic003G297200--Sobic007G084200 Sobic003G297200--Sobic003G244000 Sobic002G190000 Sobic002G190000 Sobic003G297200--Sobic002G190000 Sobic002G113400 Sobic002G113400 Sobic001G521100--Sobic002G113400 Sobic001G521100--Sobic002G246900 Sobic001G521100--Sobic002G351100 Sobic001G521100--Sobic002G315400 Sobic001G025900 Sobic001G025900 Sobic001G521100--Sobic001G025900 Sobic006G119300 Sobic006G119300 Sobic001G521100--Sobic006G119300 Sobic001G521100--Sobic006G236800 Sobic003G442300 Sobic003G442300 Sobic001G521100--Sobic003G442300 Sobic001G521100--Sobic003G297200 Sobic003G244000--Sobic001G238900 Sobic001G054700 Sobic001G054700 Sobic003G244000--Sobic001G054700 Sobic007G201900 Sobic007G201900 Sobic003G244000--Sobic007G201900 Sobic002G230800 Sobic002G230800 Sobic003G244000--Sobic002G230800 Sobic003G244000--Sobic002G351100 Sobic001G118800 Sobic001G118800 Sobic003G244000--Sobic001G118800 Sobic009G143200 Sobic009G143200 Sobic003G244000--Sobic009G143200 Sobic005G157300 Sobic005G157300 Sobic003G244000--Sobic005G157300 Sobic004G317000 Sobic004G317000 Sobic003G244000--Sobic004G317000 Sobic002G315400--Sobic001G521100 Sobic002G092200 Sobic002G092200 Sobic002G315400--Sobic002G092200 Sobic002G315400--Sobic002G351100 Sobic002G236700 Sobic002G236700 Sobic002G315400--Sobic002G236700 Sobic009G109300 Sobic009G109300 Sobic002G315400--Sobic009G109300 Sobic003G412800 Sobic003G412800 Sobic002G315400--Sobic003G412800 Sobic002G315400--Sobic003G297200 Sobic002G315400--Sobic002G246900 Sobic007G112100 Sobic007G112100 Sobic002G315400--Sobic007G112100 Sobic001G261549 Sobic001G261549 Sobic009G194900--Sobic001G261549 Sobic009G194900--Sobic002G351100 Sobic006G102900 Sobic006G102900 Sobic009G194900--Sobic006G102900 Sobic003G107200 Sobic003G107200 Sobic009G194900--Sobic003G107200 Sobic001G255600 Sobic001G255600 Sobic009G194900--Sobic001G255600 Sobic006G134200 Sobic006G134200 Sobic009G194900--Sobic006G134200 Sobic009G194900--Sobic002G230800 Sobic009G194900--Sobic002G246900 Sobic009G194900--Sobic004G047100 Sobic001G440900--Sobic002G351100 Sobic001G440900--Sobic001G300400 Sobic010G001800 Sobic010G001800 Sobic001G440900--Sobic010G001800 Sobic001G440900--Sobic001G289900 Sobic004G327600 Sobic004G327600 Sobic001G440900--Sobic004G327600 Sobic001G235700 Sobic001G235700 Sobic001G440900--Sobic001G235700 Sobic001G107300 Sobic001G107300 Sobic001G440900--Sobic001G107300 Sobic001G440900--Sobic002G289800 Sobic007G153700 Sobic007G153700 Sobic001G440900--Sobic007G153700 Sobic002G246900--Sobic004G047100 Sobic010G105400 Sobic010G105400 Sobic002G246900--Sobic010G105400 Sobic010G191000 Sobic010G191000 Sobic002G246900--Sobic010G191000 Sobic002G246900--Sobic003G107200 Sobic002G246900--Sobic001G238900 Sobic009G181500 Sobic009G181500 Sobic002G246900--Sobic009G181500 Sobic002G246900--Sobic002G236700 Sobic001G169800 Sobic001G169800 Sobic002G246900--Sobic001G169800 Sobic002G246900--Sobic002G230800 Sobic001G238900--Sobic003G244000 Sobic001G238900--Sobic002G230800 Sobic001G105800 Sobic001G105800 Sobic001G238900--Sobic001G105800 Sobic001G238900--Sobic002G246900 Sobic002G223900 Sobic002G223900 Sobic001G238900--Sobic002G223900 Sobic001G238900--Sobic009G109300 Sobic001G238900--Sobic004G317000 Sobic001G238900--Sobic001G118800 Sobic001G238900--Sobic001G169800
Octagon: transcription factors


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