Gene annotation
Transcriptome id Sobic.001G146900.1
Synonym Sb01g012800
Functional annotation expressed protein
UniProt C5WQF2
Pfam -
Panther DB PTHR31218 PTHR31218:SF35
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT1G16520 : -
RAP-DB (Rice) LOC_Os03g45760.1 : expressed protein
MaizeGDB (Corn) Zm00025a017193 , Zm00025a007544 , Zm00025a047766
Brachypodium KQK13889
Barley -
Wheat TraesCS4B02G016300 , TraesCS4D02G014700 , TraesCS4A02G297400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G146900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G172950 - K02541: DNA replication licensing factor MCM3
2 Sobic.009G087000 MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed K02542: DNA replication licensing factor MCM6
3 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
4 Sobic.001G456500 RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
5 Sobic.001G083300 transducin family protein, putative, expressed K02180: cell cycle arrest protein BUB3
6 Sobic.002G303800 expressed protein -
7 Sobic.003G444300 expressed protein K11550: SPBC25, kinetochore protein Spc25, animal type
8 Sobic.004G321400 BRUSHY 1, putative, expressed -
9 Sobic.001G169800 cyclin, putative, expressed K06627: cyclin-A
10 Sobic.001G507000 expressed protein -
11 Sobic.009G119700 acetyltransferase, GNAT family, putative, expressed -
12 Sobic.008G129200 MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed K02210: MCM7, DNA replication licensing factor MCM7
13 Sobic.001G142000 deoxyuridine 5-triphosphate nucleotidohydrolase, putative, expressed K01520: dut, dUTP pyrophosphatase
14 Sobic.004G331600 MCM5 - Putative minichromosome maintenance MCM complex subunit 5, expressed K02209: MCM5, DNA replication licensing factor MCM5
15 Sobic.002G223900 OsFBX330 - F-box domain containing protein, expressed -
16 Sobic.010G103700 POLA2 - Putative DNA polymerase alpha complex subunit, expressed K02321: DNA polymerase alpha subunit B
17 Sobic.001G025900 expressed protein -
18 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2
19 Sobic.006G116500 expressed protein -
20 Sobic.006G051000 POLA3 - Putative DNA polymerase alpha complex subunit, expressed K02685: DNA primase large subunit


Gene co-expression network
sample Sobic001G146900 Sobic001G146900 Sobic009G172950 Sobic009G172950 Sobic001G146900--Sobic009G172950 Sobic009G087000 Sobic009G087000 Sobic001G146900--Sobic009G087000 Sobic003G183700 Sobic003G183700 Sobic001G146900--Sobic003G183700 Sobic001G456500 Sobic001G456500 Sobic001G146900--Sobic001G456500 Sobic001G083300 Sobic001G083300 Sobic001G146900--Sobic001G083300 Sobic002G303800 Sobic002G303800 Sobic001G146900--Sobic002G303800 Sobic003G444300 Sobic003G444300 Sobic001G146900--Sobic003G444300 Sobic004G321400 Sobic004G321400 Sobic001G146900--Sobic004G321400 Sobic001G169800 Sobic001G169800 Sobic001G146900--Sobic001G169800 Sobic009G172950--Sobic003G183700 Sobic009G172950--Sobic009G087000 Sobic003G032200 Sobic003G032200 Sobic009G172950--Sobic003G032200 Sobic009G172950--Sobic003G444300 Sobic009G172950--Sobic001G083300 Sobic009G184200 Sobic009G184200 Sobic009G172950--Sobic009G184200 Sobic009G172950--Sobic004G321400 Sobic001G105800 Sobic001G105800 Sobic009G172950--Sobic001G105800 Sobic009G172950--Sobic001G146900 Sobic010G147700 Sobic010G147700 Sobic009G087000--Sobic010G147700 Sobic009G087000--Sobic003G183700 Sobic005G110535 Sobic005G110535 Sobic009G087000--Sobic005G110535 Sobic008G129200 Sobic008G129200 Sobic009G087000--Sobic008G129200 Sobic006G029300 Sobic006G029300 Sobic009G087000--Sobic006G029300 Sobic003G369200 Sobic003G369200 Sobic009G087000--Sobic003G369200 Sobic009G087000--Sobic004G321400 Sobic004G331600 Sobic004G331600 Sobic009G087000--Sobic004G331600 Sobic003G179500 Sobic003G179500 Sobic009G087000--Sobic003G179500 Sobic006G051000 Sobic006G051000 Sobic003G183700--Sobic006G051000 Sobic003G183700--Sobic009G087000 Sobic006G195500 Sobic006G195500 Sobic003G183700--Sobic006G195500 Sobic010G103700 Sobic010G103700 Sobic003G183700--Sobic010G103700 Sobic003G183700--Sobic003G179500 Sobic003G183700--Sobic005G110535 Sobic003G183700--Sobic008G129200 Sobic003G183700--Sobic004G321400 Sobic003G183700--Sobic010G147700 Sobic006G116500 Sobic006G116500 Sobic001G456500--Sobic006G116500 Sobic001G456500--Sobic004G331600 Sobic001G142000 Sobic001G142000 Sobic001G456500--Sobic001G142000 Sobic001G456500--Sobic001G083300 Sobic001G456500--Sobic008G129200 Sobic002G223900 Sobic002G223900 Sobic001G456500--Sobic002G223900 Sobic001G456500--Sobic001G169800 Sobic001G456500--Sobic003G444300 Sobic004G355500 Sobic004G355500 Sobic001G456500--Sobic004G355500 Sobic001G083300--Sobic001G456500 Sobic001G083300--Sobic002G223900 Sobic001G083300--Sobic003G444300 Sobic001G083300--Sobic010G147700 Sobic001G083300--Sobic009G087000 Sobic001G083300--Sobic003G183700 Sobic001G083300--Sobic008G129200 Sobic001G083300--Sobic001G105800 Sobic001G083300--Sobic004G331600 Sobic002G303800--Sobic003G444300 Sobic006G120600 Sobic006G120600 Sobic002G303800--Sobic006G120600 Sobic002G303800--Sobic001G169800 Sobic002G303800--Sobic003G183700 Sobic002G303800--Sobic010G103700 Sobic002G303800--Sobic001G146900 Sobic002G303800--Sobic003G179500 Sobic002G303800--Sobic006G051000 Sobic002G303800--Sobic001G083300 Sobic003G444300--Sobic001G456500 Sobic003G444300--Sobic001G083300 Sobic003G444300--Sobic001G169800 Sobic003G444300--Sobic001G105800 Sobic003G444300--Sobic001G142000 Sobic003G444300--Sobic004G331600 Sobic003G201000 Sobic003G201000 Sobic003G444300--Sobic003G201000 Sobic003G444300--Sobic002G303800 Sobic010G105400 Sobic010G105400 Sobic003G444300--Sobic010G105400 Sobic004G321400--Sobic003G183700 Sobic004G321400--Sobic009G087000 Sobic004G321400--Sobic005G110535 Sobic002G290000 Sobic002G290000 Sobic004G321400--Sobic002G290000 Sobic004G321400--Sobic003G369200 Sobic004G321400--Sobic008G129200 Sobic004G095200 Sobic004G095200 Sobic004G321400--Sobic004G095200 Sobic004G321400--Sobic009G172950 Sobic004G321400--Sobic004G331600 Sobic001G169800--Sobic001G456500 Sobic001G169800--Sobic006G116500 Sobic001G169800--Sobic003G444300 Sobic001G169800--Sobic001G083300 Sobic001G169800--Sobic002G223900 Sobic001G169800--Sobic003G183700 Sobic001G169800--Sobic001G105800 Sobic001G169800--Sobic004G355500 Sobic001G169800--Sobic003G179500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.