Gene annotation
Transcriptome id Sobic.001G468000.1
Synonym Sb01g043880
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
DUF677 domain containing protein, putative, expressed
UniProt C5WTV3
Pfam PF05055
Panther DB PTHR31113 PTHR31113:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G34320 : Protein of unknown function (DUF677)
RAP-DB (Rice) LOC_Os03g10240.1 : DUF677 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a053159 , Zm00025a001183 , Zm00025a053161
Brachypodium KQK23092
Barley HORVU4Hr1G070530.8 , HORVU4Hr1G070530.5 , HORVU4Hr1G070530.4 , HORVU4Hr1G070530.7 , HORVU4Hr1G070530.6 , HORVU4Hr1G070530.1 , HORVU4Hr1G070530.3 , HORVU4Hr1G070530.2
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.001G468000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G066400 cytochrome P450, putative, expressed K00517: indol-3-yl-methylglucosinolate hydroxylase
2 Sobic.010G212700 tetraspanin family protein, putative, expressed -
3 Sobic.006G272800 Most C2 domain protein(PubMedID : 29491869)@anthranilate phosphoribosyltransferase, putative, expressed -
4 Sobic.002G196500 linker histone H1 and H5 family protein, expressed -
5 Sobic.002G284100 ATROPGEF7/ROPGEF7, putative, expressed -
6 Sobic.001G158300 SNF7 domain containing protein, putative, expressed K12191: charged multivesicular body protein 2A
7 Sobic.010G180200 transcription factor S-II, central domain containing protein, expressed -
8 Sobic.002G302600 OsFBX291 - F-box domain containing protein, expressed -
9 Sobic.001G171100 expressed protein -
10 Sobic.008G070700 leafbladeless1, putative, expressed -
11 Sobic.007G153700 transcription regulator, putative, expressed -
12 Sobic.008G041900 expressed protein -
13 Sobic.002G253900 growth regulator related protein, putative, expressed -
14 Sobic.002G351100 DNA repair protein Rad51, putative, expressed K04482: DNA repair protein RAD51
15 Sobic.002G006100 phytosulfokine receptor precursor, putative, expressed -
16 Sobic.003G217500 expressed protein -
17 Sobic.004G250600 NHL repeat-containing protein, putative, expressed -
18 Sobic.002G366000 X8 domain containing protein, expressed -
19 Sobic.009G006900 ZOS5-01 - C2H2 zinc finger protein, expressed -
20 Sobic.001G101900 SCP-like extracellular protein, expressed -


Gene co-expression network
sample Sobic001G468000 Sobic001G468000 Sobic006G066400 Sobic006G066400 Sobic001G468000--Sobic006G066400 Sobic010G212700 Sobic010G212700 Sobic001G468000--Sobic010G212700 Sobic006G272800 Sobic006G272800 Sobic001G468000--Sobic006G272800 Sobic002G196500 Sobic002G196500 Sobic001G468000--Sobic002G196500 Sobic002G284100 Sobic002G284100 Sobic001G468000--Sobic002G284100 Sobic001G158300 Sobic001G158300 Sobic001G468000--Sobic001G158300 Sobic010G180200 Sobic010G180200 Sobic001G468000--Sobic010G180200 Sobic002G302600 Sobic002G302600 Sobic001G468000--Sobic002G302600 Sobic001G171100 Sobic001G171100 Sobic001G468000--Sobic001G171100 Sobic006G066400--Sobic001G468000 Sobic003G022900 Sobic003G022900 Sobic006G066400--Sobic003G022900 Sobic006G066400--Sobic010G212700 Sobic006G066400--Sobic010G180200 Sobic006G066400--Sobic001G171100 Sobic006G066400--Sobic002G196500 Sobic002G366000 Sobic002G366000 Sobic006G066400--Sobic002G366000 Sobic002G244600 Sobic002G244600 Sobic006G066400--Sobic002G244600 Sobic006G066400--Sobic006G272800 Sobic010G212700--Sobic001G171100 Sobic010G212700--Sobic001G468000 Sobic010G212700--Sobic003G022900 Sobic010G212700--Sobic006G066400 Sobic010G212700--Sobic010G180200 Sobic010G212700--Sobic002G196500 Sobic004G218000 Sobic004G218000 Sobic010G212700--Sobic004G218000 Sobic002G374200 Sobic002G374200 Sobic010G212700--Sobic002G374200 Sobic004G014100 Sobic004G014100 Sobic010G212700--Sobic004G014100 Sobic006G272800--Sobic002G284100 Sobic002G027600 Sobic002G027600 Sobic006G272800--Sobic002G027600 Sobic004G267600 Sobic004G267600 Sobic006G272800--Sobic004G267600 Sobic008G070700 Sobic008G070700 Sobic006G272800--Sobic008G070700 Sobic005G032600 Sobic005G032600 Sobic006G272800--Sobic005G032600 Sobic006G272800--Sobic001G468000 Sobic002G006100 Sobic002G006100 Sobic006G272800--Sobic002G006100 Sobic006G142500 Sobic006G142500 Sobic006G272800--Sobic006G142500 Sobic006G272800--Sobic001G158300 Sobic003G250100 Sobic003G250100 Sobic002G196500--Sobic003G250100 Sobic002G196500--Sobic001G468000 Sobic002G196500--Sobic006G272800 Sobic002G112000 Sobic002G112000 Sobic002G196500--Sobic002G112000 Sobic002G335500 Sobic002G335500 Sobic002G196500--Sobic002G335500 Sobic004G234600 Sobic004G234600 Sobic002G196500--Sobic004G234600 Sobic007G201900 Sobic007G201900 Sobic002G196500--Sobic007G201900 Sobic002G196500--Sobic001G171100 Sobic003G091200 Sobic003G091200 Sobic002G196500--Sobic003G091200 Sobic002G284100--Sobic006G272800 Sobic002G284100--Sobic004G267600 Sobic002G284100--Sobic002G027600 Sobic001G369800 Sobic001G369800 Sobic002G284100--Sobic001G369800 Sobic001G123100 Sobic001G123100 Sobic002G284100--Sobic001G123100 Sobic001G540700 Sobic001G540700 Sobic002G284100--Sobic001G540700 Sobic010G086000 Sobic010G086000 Sobic002G284100--Sobic010G086000 Sobic009G172950 Sobic009G172950 Sobic002G284100--Sobic009G172950 Sobic002G284100--Sobic006G142500 Sobic001G158300--Sobic006G272800 Sobic001G158300--Sobic002G284100 Sobic001G158300--Sobic008G070700 Sobic010G003300 Sobic010G003300 Sobic001G158300--Sobic010G003300 Sobic001G158300--Sobic001G468000 Sobic001G158300--Sobic002G027600 Sobic001G158300--Sobic004G267600 Sobic001G158300--Sobic002G196500 Sobic010G237800 Sobic010G237800 Sobic001G158300--Sobic010G237800 Sobic003G402100 Sobic003G402100 Sobic010G180200--Sobic003G402100 Sobic001G053700 Sobic001G053700 Sobic010G180200--Sobic001G053700 Sobic001G324800 Sobic001G324800 Sobic010G180200--Sobic001G324800 Sobic010G180200--Sobic006G066400 Sobic010G180200--Sobic004G014100 Sobic001G394900 Sobic001G394900 Sobic010G180200--Sobic001G394900 Sobic007G023600 Sobic007G023600 Sobic010G180200--Sobic007G023600 Sobic010G180200--Sobic004G218000 Sobic010G180200--Sobic010G212700 Sobic002G302600--Sobic001G540700 Sobic004G207000 Sobic004G207000 Sobic002G302600--Sobic004G207000 Sobic002G302600--Sobic006G272800 Sobic002G302600--Sobic001G468000 Sobic002G302600--Sobic002G284100 Sobic006G126600 Sobic006G126600 Sobic002G302600--Sobic006G126600 Sobic009G006900 Sobic009G006900 Sobic002G302600--Sobic009G006900 Sobic009G031500 Sobic009G031500 Sobic002G302600--Sobic009G031500 Sobic007G197100 Sobic007G197100 Sobic002G302600--Sobic007G197100 Sobic001G171100--Sobic010G212700 Sobic001G171100--Sobic003G022900 Sobic001G377600 Sobic001G377600 Sobic001G171100--Sobic001G377600 Sobic008G072900 Sobic008G072900 Sobic001G171100--Sobic008G072900 Sobic003G027200 Sobic003G027200 Sobic001G171100--Sobic003G027200 Sobic005G164800 Sobic005G164800 Sobic001G171100--Sobic005G164800 Sobic003G029900 Sobic003G029900 Sobic001G171100--Sobic003G029900 Sobic001G171200 Sobic001G171200 Sobic001G171100--Sobic001G171200 Sobic006G097300 Sobic006G097300 Sobic001G171100--Sobic006G097300
Octagon: transcription factors


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