Gene annotation
Transcriptome id Sobic.002G253900.1
Synonym Sb02g028940
Functional annotation growth regulator related protein, putative, expressed
UniProt C5X4L0
Pfam PF10250
Panther DB PTHR31288 PTHR31288:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G21190 : O-fucosyltransferase family protein
RAP-DB (Rice) LOC_Os09g32320.1 : growth regulator related protein, putative, expressed
MaizeGDB (Corn) Zm00025a047515 , Zm00025a019210 , Zm00025a014264 , Zm00025a042004
Brachypodium KQJ90867
Barley HORVU5Hr1G075060.5 , HORVU5Hr1G075060.4 , HORVU5Hr1G075060.7 , HORVU5Hr1G075060.6 , HORVU5Hr1G075060.1 , HORVU5Hr1G075060.3 , HORVU5Hr1G075060.2 , HORVU5Hr1G075060.9 , HORVU5Hr1G075060.8
Wheat TraesCS5A02G276600 , TraesCS5A02G276600 , TraesCS5D02G284000 , TraesCS5B02G276600 , TraesCS5B02G276600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G253900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G148000 anthranilate phosphoribosyltransferase, putative, expressed -
2 Sobic.001G123100 Os3bglu8 - beta-glucosidase, exo-beta-glucansase, high similarity to Os3bglu7, expressed K05350: beta-glucosidase
3 Sobic.006G200901 - -
4 Sobic.002G343000 expressed protein -
5 Sobic.001G005800 - K10885: XRCC5, KU80, ATP-dependent DNA helicase 2 subunit 2
6 Sobic.001G540700 expressed protein -
7 Sobic.006G218900 TKL_IRAK_CrRLK1L-1.9 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
8 Sobic.002G284100 ATROPGEF7/ROPGEF7, putative, expressed -
9 Sobic.002G006100 phytosulfokine receptor precursor, putative, expressed -
10 Sobic.001G369800 monocopper oxidase, putative, expressed -
11 Sobic.006G272800 Most C2 domain protein(PubMedID : 29491869)@anthranilate phosphoribosyltransferase, putative, expressed -
12 Sobic.004G014100 sialyltransferase family domain containing protein, expressed -
13 Sobic.003G298900 1,3-beta-glucan synthase component, putative, expressed K11000: callose synthase
14 Sobic.003G345000 CAMK_CAMK_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
15 Sobic.001G507000 expressed protein -
16 Sobic.007G072100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBL44 - F-box domain and LRR containing protein, expressed -
17 Sobic.002G351700 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
18 Sobic.003G240100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.009G225500 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
20 Sobic.003G226700 kinesin motor domain containing protein, putative, expressed K10393: KIF2_24, kinesin family member 2/24


Gene co-expression network
sample Sobic002G253900 Sobic002G253900 Sobic009G148000 Sobic009G148000 Sobic002G253900--Sobic009G148000 Sobic001G123100 Sobic001G123100 Sobic002G253900--Sobic001G123100 Sobic006G200901 Sobic006G200901 Sobic002G253900--Sobic006G200901 Sobic002G343000 Sobic002G343000 Sobic002G253900--Sobic002G343000 Sobic001G005800 Sobic001G005800 Sobic002G253900--Sobic001G005800 Sobic001G540700 Sobic001G540700 Sobic002G253900--Sobic001G540700 Sobic006G218900 Sobic006G218900 Sobic002G253900--Sobic006G218900 Sobic002G284100 Sobic002G284100 Sobic002G253900--Sobic002G284100 Sobic002G006100 Sobic002G006100 Sobic002G253900--Sobic002G006100 Sobic009G148000--Sobic002G343000 Sobic009G148000--Sobic002G253900 Sobic009G148000--Sobic006G200901 Sobic006G186300 Sobic006G186300 Sobic009G148000--Sobic006G186300 Sobic003G217500 Sobic003G217500 Sobic009G148000--Sobic003G217500 Sobic009G148000--Sobic001G005800 Sobic004G014100 Sobic004G014100 Sobic009G148000--Sobic004G014100 Sobic008G041900 Sobic008G041900 Sobic009G148000--Sobic008G041900 Sobic004G250600 Sobic004G250600 Sobic009G148000--Sobic004G250600 Sobic001G123100--Sobic002G284100 Sobic001G123100--Sobic002G253900 Sobic001G369800 Sobic001G369800 Sobic001G123100--Sobic001G369800 Sobic005G143100 Sobic005G143100 Sobic001G123100--Sobic005G143100 Sobic004G145300 Sobic004G145300 Sobic001G123100--Sobic004G145300 Sobic001G123300 Sobic001G123300 Sobic001G123100--Sobic001G123300 Sobic001G123100--Sobic001G540700 Sobic001G123100--Sobic002G006100 Sobic003G224700 Sobic003G224700 Sobic001G123100--Sobic003G224700 Sobic006G200901--Sobic002G343000 Sobic006G143300 Sobic006G143300 Sobic006G200901--Sobic006G143300 Sobic006G200901--Sobic004G014100 Sobic006G200901--Sobic009G148000 Sobic006G200901--Sobic002G253900 Sobic006G200901--Sobic003G217500 Sobic006G200901--Sobic006G186300 Sobic002G230400 Sobic002G230400 Sobic006G200901--Sobic002G230400 Sobic004G075700 Sobic004G075700 Sobic006G200901--Sobic004G075700 Sobic002G343000--Sobic009G148000 Sobic002G343000--Sobic006G200901 Sobic002G343000--Sobic004G014100 Sobic002G343000--Sobic006G143300 Sobic002G343000--Sobic002G253900 Sobic002G343000--Sobic003G217500 Sobic002G343000--Sobic002G230400 Sobic002G343000--Sobic008G041900 Sobic002G343000--Sobic006G186300 Sobic001G005800--Sobic002G253900 Sobic008G045800 Sobic008G045800 Sobic001G005800--Sobic008G045800 Sobic002G056000 Sobic002G056000 Sobic001G005800--Sobic002G056000 Sobic002G335500 Sobic002G335500 Sobic001G005800--Sobic002G335500 Sobic001G005800--Sobic009G148000 Sobic001G005800--Sobic006G200901 Sobic006G106200 Sobic006G106200 Sobic001G005800--Sobic006G106200 Sobic001G005800--Sobic004G014100 Sobic001G005800--Sobic002G343000 Sobic001G540700--Sobic002G284100 Sobic007G197100 Sobic007G197100 Sobic001G540700--Sobic007G197100 Sobic004G207000 Sobic004G207000 Sobic001G540700--Sobic004G207000 Sobic004G267600 Sobic004G267600 Sobic001G540700--Sobic004G267600 Sobic004G315700 Sobic004G315700 Sobic001G540700--Sobic004G315700 Sobic006G272800 Sobic006G272800 Sobic001G540700--Sobic006G272800 Sobic001G487200 Sobic001G487200 Sobic001G540700--Sobic001G487200 Sobic001G540700--Sobic001G369800 Sobic003G345000 Sobic003G345000 Sobic001G540700--Sobic003G345000 Sobic006G218900--Sobic004G315700 Sobic006G218900--Sobic001G369800 Sobic003G226700 Sobic003G226700 Sobic006G218900--Sobic003G226700 Sobic006G218900--Sobic001G540700 Sobic006G218900--Sobic002G253900 Sobic006G218900--Sobic003G345000 Sobic006G218900--Sobic001G487200 Sobic006G218900--Sobic002G284100 Sobic007G084200 Sobic007G084200 Sobic006G218900--Sobic007G084200 Sobic002G284100--Sobic006G272800 Sobic002G284100--Sobic004G267600 Sobic002G027600 Sobic002G027600 Sobic002G284100--Sobic002G027600 Sobic002G284100--Sobic001G369800 Sobic002G284100--Sobic001G123100 Sobic002G284100--Sobic001G540700 Sobic010G086000 Sobic010G086000 Sobic002G284100--Sobic010G086000 Sobic009G172950 Sobic009G172950 Sobic002G284100--Sobic009G172950 Sobic006G142500 Sobic006G142500 Sobic002G284100--Sobic006G142500 Sobic002G006100--Sobic002G027600 Sobic003G259300 Sobic003G259300 Sobic002G006100--Sobic003G259300 Sobic002G006100--Sobic006G272800 Sobic003G351900 Sobic003G351900 Sobic002G006100--Sobic003G351900 Sobic001G425700 Sobic001G425700 Sobic002G006100--Sobic001G425700 Sobic003G298900 Sobic003G298900 Sobic002G006100--Sobic003G298900 Sobic002G006100--Sobic002G284100 Sobic004G078500 Sobic004G078500 Sobic002G006100--Sobic004G078500 Sobic009G225500 Sobic009G225500 Sobic002G006100--Sobic009G225500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.