Gene annotation
Transcriptome id Sobic.001G005800.1
Synonym KU80, ATKU80, Sb01g000620
Functional annotation -
UniProt A0A1B6QGN0
Pfam PF03730 PF03731 PF08785 PF02735
Panther DB PTHR12604 PTHR12604:SF4
NCBI CDD KOG2326; DNA-binding subunit of a DNA-dependent protein kinase (Ku80 autoantigen)
KEGG Orthology K10885; XRCC5, KU80, ATP-dependent DNA helicase 2 subunit 2
Gene Ontology GO:0006303; double-strand break repair via nonhomologous end joining GO:0004003DNA helicase activity GO:0003677DNA binding GO:0016817hydrolase activity, acting on acid anhydrides


Orthologs (automatic annotation)
TAIR AT1G48050 : Ku80 family protein
RAP-DB (Rice) LOC_Os03g63920.1 : KAP-2, putative, expressed
MaizeGDB (Corn) Zm00025a009107
Brachypodium PNT73761 , PNT73760 , PNT73762 , KQK12012 , PNT73758 , PNT73759
Barley HORVU0Hr1G038620.11 , HORVU0Hr1G038620.10 , HORVU0Hr1G038620.13 , HORVU0Hr1G038620.12 , HORVU0Hr1G038620.15 , HORVU0Hr1G038620.14 , HORVU0Hr1G038620.5 , HORVU0Hr1G038620.4 , HORVU0Hr1G038620.7 , HORVU0Hr1G038620.6 , HORVU0Hr1G038620.1 , HORVU0Hr1G038620.3 , HORVU0Hr1G038620.2 , HORVU0Hr1G038620.9 , HORVU0Hr1G038620.8
Wheat TraesCS5B02G559300 , TraesCS5B02G559300 , TraesCS5B02G559300 , TraesCS4A02G319800 , TraesCS5D02G565400 , TraesCS5D02G565400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G253900 growth regulator related protein, putative, expressed -
2 Sobic.008G045800 PHD-finger family protein, expressed -
3 Sobic.002G056000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@C-5 cytosine-specific DNA methylase, putative, expressed K00558: DNMT1, DNA (cytosine-5)-methyltransferase 1
4 Sobic.002G335500 OsFBX255 - F-box domain containing protein, expressed -
5 Sobic.009G148000 anthranilate phosphoribosyltransferase, putative, expressed -
6 Sobic.006G200901 - -
7 Sobic.006G106200 NAP domain containing protein, putative, expressed K11290: SET, TAF1, template-activating factor I
8 Sobic.004G014100 sialyltransferase family domain containing protein, expressed -
9 Sobic.002G343000 expressed protein -
10 Sobic.002G006100 phytosulfokine receptor precursor, putative, expressed -
11 Sobic.001G507000 expressed protein -
12 Sobic.004G078500 Leucine Rich Repeat family protein, expressed -
13 Sobic.008G118100 kelch repeat protein, putative, expressed -
14 Sobic.001G540700 expressed protein -
15 Sobic.005G068800 TOPBP1A - Similar to DNA replication protein TOPBP1 from, expressed K10728: topoisomerase (DNA) II binding protein 1
16 Sobic.010G236200 RecF/RecN/SMC N terminal domain containing protein, expressed -
17 Sobic.002G367200 RNA-binding protein-like, putative, expressed -
18 Sobic.002G095300 deoxynucleoside kinase family, putative, expressed K00893: deoxycitidine kinase
19 Sobic.009G225500 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
20 Sobic.003G345000 CAMK_CAMK_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase


Gene co-expression network
sample Sobic001G005800 Sobic001G005800 Sobic002G253900 Sobic002G253900 Sobic001G005800--Sobic002G253900 Sobic008G045800 Sobic008G045800 Sobic001G005800--Sobic008G045800 Sobic002G056000 Sobic002G056000 Sobic001G005800--Sobic002G056000 Sobic002G335500 Sobic002G335500 Sobic001G005800--Sobic002G335500 Sobic009G148000 Sobic009G148000 Sobic001G005800--Sobic009G148000 Sobic006G200901 Sobic006G200901 Sobic001G005800--Sobic006G200901 Sobic006G106200 Sobic006G106200 Sobic001G005800--Sobic006G106200 Sobic004G014100 Sobic004G014100 Sobic001G005800--Sobic004G014100 Sobic002G343000 Sobic002G343000 Sobic001G005800--Sobic002G343000 Sobic002G253900--Sobic009G148000 Sobic001G123100 Sobic001G123100 Sobic002G253900--Sobic001G123100 Sobic002G253900--Sobic006G200901 Sobic002G253900--Sobic002G343000 Sobic002G253900--Sobic001G005800 Sobic001G540700 Sobic001G540700 Sobic002G253900--Sobic001G540700 Sobic006G218900 Sobic006G218900 Sobic002G253900--Sobic006G218900 Sobic002G284100 Sobic002G284100 Sobic002G253900--Sobic002G284100 Sobic002G006100 Sobic002G006100 Sobic002G253900--Sobic002G006100 Sobic008G045800--Sobic001G005800 Sobic009G257500 Sobic009G257500 Sobic008G045800--Sobic009G257500 Sobic008G045800--Sobic004G014100 Sobic010G262900 Sobic010G262900 Sobic008G045800--Sobic010G262900 Sobic010G180200 Sobic010G180200 Sobic008G045800--Sobic010G180200 Sobic008G045800--Sobic006G200901 Sobic002G230400 Sobic002G230400 Sobic008G045800--Sobic002G230400 Sobic010G236200 Sobic010G236200 Sobic008G045800--Sobic010G236200 Sobic004G075700 Sobic004G075700 Sobic008G045800--Sobic004G075700 Sobic002G056000--Sobic001G005800 Sobic002G056000--Sobic001G123100 Sobic002G056000--Sobic002G253900 Sobic001G507000 Sobic001G507000 Sobic002G056000--Sobic001G507000 Sobic002G056000--Sobic009G148000 Sobic003G103701 Sobic003G103701 Sobic002G056000--Sobic003G103701 Sobic009G254000 Sobic009G254000 Sobic002G056000--Sobic009G254000 Sobic002G056000--Sobic002G006100 Sobic002G254800 Sobic002G254800 Sobic002G056000--Sobic002G254800 Sobic004G078500 Sobic004G078500 Sobic002G335500--Sobic004G078500 Sobic001G081800 Sobic001G081800 Sobic002G335500--Sobic001G081800 Sobic002G196500 Sobic002G196500 Sobic002G335500--Sobic002G196500 Sobic002G335500--Sobic001G005800 Sobic009G002200 Sobic009G002200 Sobic002G335500--Sobic009G002200 Sobic003G259300 Sobic003G259300 Sobic002G335500--Sobic003G259300 Sobic002G335500--Sobic002G006100 Sobic004G145300 Sobic004G145300 Sobic002G335500--Sobic004G145300 Sobic001G465500 Sobic001G465500 Sobic002G335500--Sobic001G465500 Sobic009G148000--Sobic002G343000 Sobic009G148000--Sobic002G253900 Sobic009G148000--Sobic006G200901 Sobic006G186300 Sobic006G186300 Sobic009G148000--Sobic006G186300 Sobic003G217500 Sobic003G217500 Sobic009G148000--Sobic003G217500 Sobic009G148000--Sobic001G005800 Sobic009G148000--Sobic004G014100 Sobic008G041900 Sobic008G041900 Sobic009G148000--Sobic008G041900 Sobic004G250600 Sobic004G250600 Sobic009G148000--Sobic004G250600 Sobic006G200901--Sobic002G343000 Sobic006G143300 Sobic006G143300 Sobic006G200901--Sobic006G143300 Sobic006G200901--Sobic004G014100 Sobic006G200901--Sobic009G148000 Sobic006G200901--Sobic002G253900 Sobic006G200901--Sobic003G217500 Sobic006G200901--Sobic006G186300 Sobic006G200901--Sobic002G230400 Sobic006G200901--Sobic004G075700 Sobic001G211500 Sobic001G211500 Sobic006G106200--Sobic001G211500 Sobic008G070700 Sobic008G070700 Sobic006G106200--Sobic008G070700 Sobic010G222800 Sobic010G222800 Sobic006G106200--Sobic010G222800 Sobic003G072500 Sobic003G072500 Sobic006G106200--Sobic003G072500 Sobic003G289700 Sobic003G289700 Sobic006G106200--Sobic003G289700 Sobic004G149400 Sobic004G149400 Sobic006G106200--Sobic004G149400 Sobic006G106200--Sobic001G005800 Sobic009G216500 Sobic009G216500 Sobic006G106200--Sobic009G216500 Sobic002G112000 Sobic002G112000 Sobic006G106200--Sobic002G112000 Sobic004G014100--Sobic002G343000 Sobic004G014100--Sobic006G200901 Sobic005G160200 Sobic005G160200 Sobic004G014100--Sobic005G160200 Sobic004G014100--Sobic006G143300 Sobic003G343200 Sobic003G343200 Sobic004G014100--Sobic003G343200 Sobic002G349000 Sobic002G349000 Sobic004G014100--Sobic002G349000 Sobic004G014100--Sobic002G230400 Sobic002G354800 Sobic002G354800 Sobic004G014100--Sobic002G354800 Sobic006G140300 Sobic006G140300 Sobic004G014100--Sobic006G140300 Sobic002G343000--Sobic009G148000 Sobic002G343000--Sobic006G200901 Sobic002G343000--Sobic004G014100 Sobic002G343000--Sobic006G143300 Sobic002G343000--Sobic002G253900 Sobic002G343000--Sobic003G217500 Sobic002G343000--Sobic002G230400 Sobic002G343000--Sobic008G041900 Sobic002G343000--Sobic006G186300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.