Gene annotation
Transcriptome id Sobic.010G236200.1
Synonym SMC5, Sb10g027780
Functional annotation RecF/RecN/SMC N terminal domain containing protein, expressed
UniProt C5Z8A4
Pfam PF02463
Panther DB PTHR19306 PTHR19306:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006281; DNA repair GO:0000724double-strand break repair via homologous recombination


Orthologs (automatic annotation)
TAIR AT5G15920 : structural maintenance of chromosomes 5
RAP-DB (Rice) LOC_Os05g51790.1 : RecF/RecN/SMC N terminal domain containing protein, expressed
MaizeGDB (Corn) Zm00025a018172
Brachypodium PNT70611 , KQK04544 , KQK04545
Barley HORVU1Hr1G095230.36 , HORVU1Hr1G095230.34 , HORVU1Hr1G095230.35 , HORVU1Hr1G095230.32 , HORVU1Hr1G095230.33 , HORVU1Hr1G095230.30 , HORVU1Hr1G095230.31 , HORVU1Hr1G095230.14 , HORVU1Hr1G095230.15 , HORVU1Hr1G095230.16 , HORVU1Hr1G095230.17 , HORVU1Hr1G095230.10 , HORVU1Hr1G095230.11 , HORVU1Hr1G095230.12 , HORVU1Hr1G095230.13 , HORVU1Hr1G095230.18 , HORVU1Hr1G095230.19 , HORVU1Hr1G095230.8 , HORVU1Hr1G095230.5 , HORVU1Hr1G095230.2 , HORVU1Hr1G095230.29 , HORVU1Hr1G095230.28 , HORVU1Hr1G095230.21 , HORVU1Hr1G095230.20 , HORVU1Hr1G095230.23 , HORVU1Hr1G095230.22 , HORVU1Hr1G095230.25 , HORVU1Hr1G095230.24 , HORVU1Hr1G095230.27 , HORVU1Hr1G095230.26 , HORVU1Hr1G095230.9 , HORVU1Hr1G095230.6 , HORVU1Hr1G095230.7 , HORVU1Hr1G095230.4 , HORVU1Hr1G095230.1
Wheat TraesCS1A02G445000 , TraesCS1A02G445000 , TraesCS1D02G453100 , TraesCS1B02G479800
Populus PNT56755 , PNT56757


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G032200 DNA methyltransferase protein, putative, expressed -
2 Sobic.010G269300 hydrolase, acting on carbon-nitrogen, putative, expressed -
3 Sobic.010G149600 intracellular protein transport protein USO1-related, putative, expressed -
4 Sobic.004G043750 - K16251: DNA-directed RNA polymerase V subunit 1
5 Sobic.003G221500 CENP-C1, putative, expressed -
6 Sobic.004G111000 bromodomain containing protein, expressed -
7 Sobic.002G254800 DNA topoisomerase 3 protein, putative, expressed K03165: DNA topoisomerase III
8 Sobic.009G257500 expressed protein -
9 Sobic.007G125700 NHL repeat-containing protein, putative, expressed -
10 Sobic.010G227000 pentatricopeptide, putative, expressed -
11 Sobic.002G430900 PWWP domain containing protein, expressed -
12 Sobic.010G233000 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
13 Sobic.008G045800 PHD-finger family protein, expressed -
14 Sobic.004G207000 fasciated ear2, putative, expressed -
15 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
16 Sobic.003G409200 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
17 Sobic.001G005800 - K10885: XRCC5, KU80, ATP-dependent DNA helicase 2 subunit 2
18 Sobic.010G215900 type II intron maturase protein, putative, expressed -
19 Sobic.009G006900 ZOS5-01 - C2H2 zinc finger protein, expressed -
20 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160


Gene co-expression network
sample Sobic010G236200 Sobic010G236200 Sobic009G032200 Sobic009G032200 Sobic010G236200--Sobic009G032200 Sobic010G269300 Sobic010G269300 Sobic010G236200--Sobic010G269300 Sobic010G149600 Sobic010G149600 Sobic010G236200--Sobic010G149600 Sobic004G043750 Sobic004G043750 Sobic010G236200--Sobic004G043750 Sobic003G221500 Sobic003G221500 Sobic010G236200--Sobic003G221500 Sobic004G111000 Sobic004G111000 Sobic010G236200--Sobic004G111000 Sobic002G254800 Sobic002G254800 Sobic010G236200--Sobic002G254800 Sobic009G257500 Sobic009G257500 Sobic010G236200--Sobic009G257500 Sobic007G125700 Sobic007G125700 Sobic010G236200--Sobic007G125700 Sobic009G032200--Sobic010G236200 Sobic010G233000 Sobic010G233000 Sobic009G032200--Sobic010G233000 Sobic009G032200--Sobic010G269300 Sobic009G032200--Sobic004G043750 Sobic008G057000 Sobic008G057000 Sobic009G032200--Sobic008G057000 Sobic009G032200--Sobic009G257500 Sobic009G032200--Sobic003G221500 Sobic010G215900 Sobic010G215900 Sobic009G032200--Sobic010G215900 Sobic001G135500 Sobic001G135500 Sobic009G032200--Sobic001G135500 Sobic010G269300--Sobic007G125700 Sobic002G430900 Sobic002G430900 Sobic010G269300--Sobic002G430900 Sobic002G263700 Sobic002G263700 Sobic010G269300--Sobic002G263700 Sobic001G123600 Sobic001G123600 Sobic010G269300--Sobic001G123600 Sobic003G360300 Sobic003G360300 Sobic010G269300--Sobic003G360300 Sobic008G080500 Sobic008G080500 Sobic010G269300--Sobic008G080500 Sobic010G269300--Sobic010G236200 Sobic010G279900 Sobic010G279900 Sobic010G269300--Sobic010G279900 Sobic010G269300--Sobic009G032200 Sobic002G219900 Sobic002G219900 Sobic010G149600--Sobic002G219900 Sobic010G149600--Sobic007G125700 Sobic010G149600--Sobic002G430900 Sobic001G395200 Sobic001G395200 Sobic010G149600--Sobic001G395200 Sobic009G006900 Sobic009G006900 Sobic010G149600--Sobic009G006900 Sobic010G149600--Sobic010G236200 Sobic005G032600 Sobic005G032600 Sobic010G149600--Sobic005G032600 Sobic004G207000 Sobic004G207000 Sobic010G149600--Sobic004G207000 Sobic010G149600--Sobic004G043750 Sobic009G190200 Sobic009G190200 Sobic004G043750--Sobic009G190200 Sobic006G280100 Sobic006G280100 Sobic004G043750--Sobic006G280100 Sobic009G259900 Sobic009G259900 Sobic004G043750--Sobic009G259900 Sobic004G043750--Sobic010G236200 Sobic004G043750--Sobic001G395200 Sobic004G043750--Sobic004G111000 Sobic004G043750--Sobic010G269300 Sobic004G043750--Sobic007G125700 Sobic004G043750--Sobic010G233000 Sobic004G256300 Sobic004G256300 Sobic003G221500--Sobic004G256300 Sobic002G142700 Sobic002G142700 Sobic003G221500--Sobic002G142700 Sobic003G004600 Sobic003G004600 Sobic003G221500--Sobic003G004600 Sobic003G221500--Sobic010G236200 Sobic001G462600 Sobic001G462600 Sobic003G221500--Sobic001G462600 Sobic006G245700 Sobic006G245700 Sobic003G221500--Sobic006G245700 Sobic003G221500--Sobic009G032200 Sobic010G154000 Sobic010G154000 Sobic003G221500--Sobic010G154000 Sobic003G222700 Sobic003G222700 Sobic003G221500--Sobic003G222700 Sobic004G285000 Sobic004G285000 Sobic004G111000--Sobic004G285000 Sobic003G409200 Sobic003G409200 Sobic004G111000--Sobic003G409200 Sobic004G111000--Sobic010G215900 Sobic007G044100 Sobic007G044100 Sobic004G111000--Sobic007G044100 Sobic004G111000--Sobic010G279900 Sobic004G111000--Sobic004G043750 Sobic006G056000 Sobic006G056000 Sobic004G111000--Sobic006G056000 Sobic004G086200 Sobic004G086200 Sobic004G111000--Sobic004G086200 Sobic004G111000--Sobic002G263700 Sobic003G161800 Sobic003G161800 Sobic002G254800--Sobic003G161800 Sobic002G132600 Sobic002G132600 Sobic002G254800--Sobic002G132600 Sobic001G373000 Sobic001G373000 Sobic002G254800--Sobic001G373000 Sobic002G254800--Sobic010G236200 Sobic003G259600 Sobic003G259600 Sobic002G254800--Sobic003G259600 Sobic001G373800 Sobic001G373800 Sobic002G254800--Sobic001G373800 Sobic006G033101 Sobic006G033101 Sobic002G254800--Sobic006G033101 Sobic004G038100 Sobic004G038100 Sobic002G254800--Sobic004G038100 Sobic002G254800--Sobic009G032200 Sobic006G126600 Sobic006G126600 Sobic009G257500--Sobic006G126600 Sobic009G257500--Sobic009G032200 Sobic008G045800 Sobic008G045800 Sobic009G257500--Sobic008G045800 Sobic003G415100 Sobic003G415100 Sobic009G257500--Sobic003G415100 Sobic008G056200 Sobic008G056200 Sobic009G257500--Sobic008G056200 Sobic010G189100 Sobic010G189100 Sobic009G257500--Sobic010G189100 Sobic009G257500--Sobic010G236200 Sobic008G156200 Sobic008G156200 Sobic009G257500--Sobic008G156200 Sobic010G262900 Sobic010G262900 Sobic009G257500--Sobic010G262900 Sobic007G125700--Sobic002G430900 Sobic007G125700--Sobic004G207000 Sobic007G125700--Sobic010G149600 Sobic007G125700--Sobic010G269300 Sobic007G125700--Sobic002G219900 Sobic003G077500 Sobic003G077500 Sobic007G125700--Sobic003G077500 Sobic007G125700--Sobic001G395200 Sobic007G125700--Sobic004G043750 Sobic007G125700--Sobic006G280100
Octagon: transcription factors


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