Gene annotation
Transcriptome id Sobic.010G149600.5,Sobic.010G149600.4,Sobic.010G149600.2,Sobic.010G149600.6,Sobic.010G149600.1,Sobic.010G149600.3
Synonym Sb10g020070
Functional annotation intracellular protein transport protein USO1-related, putative, expressed
UniProt A0A1W0VT89 , A0A1W0VT51 , C5Z3I9
Pfam -
Panther DB PTHR31071 PTHR31071:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G41620 : -
RAP-DB (Rice) LOC_Os06g31190.1 : intracellular protein transport protein USO1-related, putative, expressed
MaizeGDB (Corn) Zm00025a042377
Brachypodium -
Barley HORVU7Hr1G080670.10 , HORVU7Hr1G080670.11 , HORVU7Hr1G080670.8 , HORVU7Hr1G080670.9 , HORVU7Hr1G080670.6 , HORVU7Hr1G080670.7 , HORVU7Hr1G080670.4 , HORVU7Hr1G080670.5 , HORVU7Hr1G080670.2 , HORVU7Hr1G080670.3 , HORVU7Hr1G080670.1
Wheat TraesCS7B02G238900 , TraesCS7A02G344200
Populus PNT03870


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G219900 Spc97 / Spc98 family protein, putative, expressed K16570: TUBGCP3, gamma-tubulin complex component 3
2 Sobic.007G125700 NHL repeat-containing protein, putative, expressed -
3 Sobic.002G430900 PWWP domain containing protein, expressed -
4 Sobic.001G395200 cyclin-related protein, putative, expressed -
5 Sobic.009G006900 ZOS5-01 - C2H2 zinc finger protein, expressed -
6 Sobic.010G236200 RecF/RecN/SMC N terminal domain containing protein, expressed -
7 Sobic.005G032600 glucan endo-1,3-beta-glucosidase-related, putative, expressed -
8 Sobic.004G207000 fasciated ear2, putative, expressed -
9 Sobic.004G043750 - K16251: DNA-directed RNA polymerase V subunit 1
10 Sobic.010G269300 hydrolase, acting on carbon-nitrogen, putative, expressed -
11 Sobic.009G259900 argonaute, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
12 Sobic.001G540700 expressed protein -
13 Sobic.003G298900 1,3-beta-glucan synthase component, putative, expressed K11000: callose synthase
14 Sobic.003G274400 WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
15 Sobic.006G280100 SET domain containing protein, expressed -
16 Sobic.003G027800 protein kinase family protein, putative, expressed -
17 Sobic.001G079900 expressed protein -
18 Sobic.010G227000 pentatricopeptide, putative, expressed -
19 Sobic.004G111000 bromodomain containing protein, expressed -
20 Sobic.003G131100 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@expressed protein -


Gene co-expression network
sample Sobic010G149600 Sobic010G149600 Sobic002G219900 Sobic002G219900 Sobic010G149600--Sobic002G219900 Sobic007G125700 Sobic007G125700 Sobic010G149600--Sobic007G125700 Sobic002G430900 Sobic002G430900 Sobic010G149600--Sobic002G430900 Sobic001G395200 Sobic001G395200 Sobic010G149600--Sobic001G395200 Sobic009G006900 Sobic009G006900 Sobic010G149600--Sobic009G006900 Sobic010G236200 Sobic010G236200 Sobic010G149600--Sobic010G236200 Sobic005G032600 Sobic005G032600 Sobic010G149600--Sobic005G032600 Sobic004G207000 Sobic004G207000 Sobic010G149600--Sobic004G207000 Sobic004G043750 Sobic004G043750 Sobic010G149600--Sobic004G043750 Sobic002G219900--Sobic002G430900 Sobic002G219900--Sobic010G149600 Sobic002G219900--Sobic007G125700 Sobic002G219900--Sobic001G395200 Sobic006G280100 Sobic006G280100 Sobic002G219900--Sobic006G280100 Sobic003G361400 Sobic003G361400 Sobic002G219900--Sobic003G361400 Sobic001G143600 Sobic001G143600 Sobic002G219900--Sobic001G143600 Sobic003G274400 Sobic003G274400 Sobic002G219900--Sobic003G274400 Sobic003G027800 Sobic003G027800 Sobic002G219900--Sobic003G027800 Sobic007G125700--Sobic002G430900 Sobic007G125700--Sobic004G207000 Sobic007G125700--Sobic010G149600 Sobic010G269300 Sobic010G269300 Sobic007G125700--Sobic010G269300 Sobic007G125700--Sobic002G219900 Sobic003G077500 Sobic003G077500 Sobic007G125700--Sobic003G077500 Sobic007G125700--Sobic001G395200 Sobic007G125700--Sobic004G043750 Sobic007G125700--Sobic006G280100 Sobic002G430900--Sobic007G125700 Sobic002G430900--Sobic002G219900 Sobic002G430900--Sobic010G269300 Sobic002G430900--Sobic010G149600 Sobic009G192500 Sobic009G192500 Sobic002G430900--Sobic009G192500 Sobic002G017900 Sobic002G017900 Sobic002G430900--Sobic002G017900 Sobic002G430900--Sobic001G395200 Sobic002G430900--Sobic009G006900 Sobic005G120700 Sobic005G120700 Sobic002G430900--Sobic005G120700 Sobic003G104100 Sobic003G104100 Sobic001G395200--Sobic003G104100 Sobic009G259900 Sobic009G259900 Sobic001G395200--Sobic009G259900 Sobic001G395200--Sobic002G219900 Sobic001G395200--Sobic010G149600 Sobic003G351900 Sobic003G351900 Sobic001G395200--Sobic003G351900 Sobic006G008300 Sobic006G008300 Sobic001G395200--Sobic006G008300 Sobic001G395200--Sobic007G125700 Sobic001G395200--Sobic004G043750 Sobic001G079900 Sobic001G079900 Sobic001G395200--Sobic001G079900 Sobic009G006900--Sobic004G207000 Sobic009G006900--Sobic010G149600 Sobic006G272800 Sobic006G272800 Sobic009G006900--Sobic006G272800 Sobic009G006900--Sobic002G430900 Sobic002G196500 Sobic002G196500 Sobic009G006900--Sobic002G196500 Sobic005G062600 Sobic005G062600 Sobic009G006900--Sobic005G062600 Sobic002G302600 Sobic002G302600 Sobic009G006900--Sobic002G302600 Sobic009G006900--Sobic002G017900 Sobic001G540700 Sobic001G540700 Sobic009G006900--Sobic001G540700 Sobic009G032200 Sobic009G032200 Sobic010G236200--Sobic009G032200 Sobic010G236200--Sobic010G269300 Sobic010G236200--Sobic010G149600 Sobic010G236200--Sobic004G043750 Sobic003G221500 Sobic003G221500 Sobic010G236200--Sobic003G221500 Sobic004G111000 Sobic004G111000 Sobic010G236200--Sobic004G111000 Sobic002G254800 Sobic002G254800 Sobic010G236200--Sobic002G254800 Sobic009G257500 Sobic009G257500 Sobic010G236200--Sobic009G257500 Sobic010G236200--Sobic007G125700 Sobic002G027600 Sobic002G027600 Sobic005G032600--Sobic002G027600 Sobic004G267600 Sobic004G267600 Sobic005G032600--Sobic004G267600 Sobic005G032600--Sobic001G079900 Sobic003G019900 Sobic003G019900 Sobic005G032600--Sobic003G019900 Sobic005G032600--Sobic006G272800 Sobic001G493900 Sobic001G493900 Sobic005G032600--Sobic001G493900 Sobic008G151600 Sobic008G151600 Sobic005G032600--Sobic008G151600 Sobic005G032600--Sobic003G351900 Sobic007G032100 Sobic007G032100 Sobic005G032600--Sobic007G032100 Sobic006G022400 Sobic006G022400 Sobic004G207000--Sobic006G022400 Sobic004G207000--Sobic001G540700 Sobic004G207000--Sobic007G125700 Sobic004G207000--Sobic009G006900 Sobic004G207000--Sobic002G302600 Sobic004G149400 Sobic004G149400 Sobic004G207000--Sobic004G149400 Sobic004G207000--Sobic005G032600 Sobic004G207000--Sobic010G149600 Sobic009G031500 Sobic009G031500 Sobic004G207000--Sobic009G031500 Sobic009G190200 Sobic009G190200 Sobic004G043750--Sobic009G190200 Sobic004G043750--Sobic006G280100 Sobic004G043750--Sobic009G259900 Sobic004G043750--Sobic010G236200 Sobic004G043750--Sobic001G395200 Sobic004G043750--Sobic004G111000 Sobic004G043750--Sobic010G269300 Sobic004G043750--Sobic007G125700 Sobic010G233000 Sobic010G233000 Sobic004G043750--Sobic010G233000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.