Gene annotation
Transcriptome id Sobic.004G043750.2,Sobic.004G043750.1
Synonym -
Functional annotation -
UniProt A0A1Z5RLY9
Pfam PF04997 PF04983 PF04998 PF11523 PF00623
Panther DB PTHR19376 PTHR19376:SF36
NCBI CDD -
KEGG Orthology K16251; DNA-directed RNA polymerase V subunit 1
Gene Ontology GO:0006351; transcription, DNA-templated GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT2G40030 : nuclear RNA polymerase D1B
RAP-DB (Rice) LOC_Os02g05880.1 : RNA polymerase Rpb1, domain 2 family protein, expressed
MaizeGDB (Corn) Zm00025a034875
Brachypodium KQJ92654
Barley HORVU6Hr1G022890.12 , HORVU6Hr1G022890.11 , HORVU6Hr1G022890.10 , HORVU6Hr1G022890.7 , HORVU6Hr1G022890.9 , HORVU6Hr1G022890.8 , HORVU6Hr1G022890.6 , HORVU6Hr1G022890.5 , HORVU6Hr1G022890.4 , HORVU6Hr1G022890.3 , HORVU6Hr1G022890.2 , HORVU6Hr1G022890.1
Wheat TraesCS6B02G094400 , TraesCS6A02G070000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G190200 transcription elongation factor SPT5 homolog 1, putative, expressed -
2 Sobic.006G280100 SET domain containing protein, expressed -
3 Sobic.009G259900 argonaute, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
4 Sobic.010G236200 RecF/RecN/SMC N terminal domain containing protein, expressed -
5 Sobic.001G395200 cyclin-related protein, putative, expressed -
6 Sobic.004G111000 bromodomain containing protein, expressed -
7 Sobic.010G269300 hydrolase, acting on carbon-nitrogen, putative, expressed -
8 Sobic.007G125700 NHL repeat-containing protein, putative, expressed -
9 Sobic.010G233000 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
10 Sobic.009G032200 DNA methyltransferase protein, putative, expressed -
11 Sobic.010G149600 intracellular protein transport protein USO1-related, putative, expressed -
12 Sobic.001G484200 "RGA1/D1(Ortholog in rice:Ashikari, 1999)"(PubMedID : 31659848)@G-protein alpha subunit, putative, expressed K04640: guanine nucleotide-binding protein subunit alpha, other
13 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
14 Sobic.008G080500 expressed protein -
15 Sobic.008G057000 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
16 Sobic.004G020900 ulp1 protease family protein, putative, expressed K16287: ubiquitin-like-specific protease 1C/D
17 Sobic.002G263700 bromodomain protein 103, putative, expressed -
18 Sobic.010G227000 pentatricopeptide, putative, expressed -
19 Sobic.003G104100 expressed protein -
20 Sobic.002G148400 histone-lysine N-methyltransferase, H3 lysine-4 specific ATX1, putative, expressed -


Gene co-expression network
sample Sobic004G043750 Sobic004G043750 Sobic009G190200 Sobic009G190200 Sobic004G043750--Sobic009G190200 Sobic006G280100 Sobic006G280100 Sobic004G043750--Sobic006G280100 Sobic009G259900 Sobic009G259900 Sobic004G043750--Sobic009G259900 Sobic010G236200 Sobic010G236200 Sobic004G043750--Sobic010G236200 Sobic001G395200 Sobic001G395200 Sobic004G043750--Sobic001G395200 Sobic004G111000 Sobic004G111000 Sobic004G043750--Sobic004G111000 Sobic010G269300 Sobic010G269300 Sobic004G043750--Sobic010G269300 Sobic007G125700 Sobic007G125700 Sobic004G043750--Sobic007G125700 Sobic010G233000 Sobic010G233000 Sobic004G043750--Sobic010G233000 Sobic009G190200--Sobic004G043750 Sobic009G190200--Sobic006G280100 Sobic002G263700 Sobic002G263700 Sobic009G190200--Sobic002G263700 Sobic007G034200 Sobic007G034200 Sobic009G190200--Sobic007G034200 Sobic008G017900 Sobic008G017900 Sobic009G190200--Sobic008G017900 Sobic009G190200--Sobic007G125700 Sobic009G031500 Sobic009G031500 Sobic009G190200--Sobic009G031500 Sobic004G038100 Sobic004G038100 Sobic009G190200--Sobic004G038100 Sobic003G298900 Sobic003G298900 Sobic009G190200--Sobic003G298900 Sobic006G280100--Sobic009G190200 Sobic002G219900 Sobic002G219900 Sobic006G280100--Sobic002G219900 Sobic006G280100--Sobic004G043750 Sobic006G280100--Sobic004G038100 Sobic007G159200 Sobic007G159200 Sobic006G280100--Sobic007G159200 Sobic003G135500 Sobic003G135500 Sobic006G280100--Sobic003G135500 Sobic006G280100--Sobic007G125700 Sobic002G079100 Sobic002G079100 Sobic006G280100--Sobic002G079100 Sobic008G080500 Sobic008G080500 Sobic006G280100--Sobic008G080500 Sobic009G259900--Sobic001G395200 Sobic009G259900--Sobic004G043750 Sobic003G104100 Sobic003G104100 Sobic009G259900--Sobic003G104100 Sobic003G129500 Sobic003G129500 Sobic009G259900--Sobic003G129500 Sobic008G045000 Sobic008G045000 Sobic009G259900--Sobic008G045000 Sobic005G153000 Sobic005G153000 Sobic009G259900--Sobic005G153000 Sobic006G008300 Sobic006G008300 Sobic009G259900--Sobic006G008300 Sobic010G149600 Sobic010G149600 Sobic009G259900--Sobic010G149600 Sobic005G163400 Sobic005G163400 Sobic009G259900--Sobic005G163400 Sobic009G032200 Sobic009G032200 Sobic010G236200--Sobic009G032200 Sobic010G236200--Sobic010G269300 Sobic010G236200--Sobic010G149600 Sobic010G236200--Sobic004G043750 Sobic003G221500 Sobic003G221500 Sobic010G236200--Sobic003G221500 Sobic010G236200--Sobic004G111000 Sobic002G254800 Sobic002G254800 Sobic010G236200--Sobic002G254800 Sobic009G257500 Sobic009G257500 Sobic010G236200--Sobic009G257500 Sobic010G236200--Sobic007G125700 Sobic001G395200--Sobic003G104100 Sobic001G395200--Sobic009G259900 Sobic001G395200--Sobic002G219900 Sobic001G395200--Sobic010G149600 Sobic003G351900 Sobic003G351900 Sobic001G395200--Sobic003G351900 Sobic001G395200--Sobic006G008300 Sobic001G395200--Sobic007G125700 Sobic001G395200--Sobic004G043750 Sobic001G079900 Sobic001G079900 Sobic001G395200--Sobic001G079900 Sobic004G285000 Sobic004G285000 Sobic004G111000--Sobic004G285000 Sobic003G409200 Sobic003G409200 Sobic004G111000--Sobic003G409200 Sobic010G215900 Sobic010G215900 Sobic004G111000--Sobic010G215900 Sobic007G044100 Sobic007G044100 Sobic004G111000--Sobic007G044100 Sobic010G279900 Sobic010G279900 Sobic004G111000--Sobic010G279900 Sobic004G111000--Sobic004G043750 Sobic006G056000 Sobic006G056000 Sobic004G111000--Sobic006G056000 Sobic004G086200 Sobic004G086200 Sobic004G111000--Sobic004G086200 Sobic004G111000--Sobic002G263700 Sobic010G269300--Sobic007G125700 Sobic002G430900 Sobic002G430900 Sobic010G269300--Sobic002G430900 Sobic010G269300--Sobic002G263700 Sobic001G123600 Sobic001G123600 Sobic010G269300--Sobic001G123600 Sobic003G360300 Sobic003G360300 Sobic010G269300--Sobic003G360300 Sobic010G269300--Sobic008G080500 Sobic010G269300--Sobic010G236200 Sobic010G269300--Sobic010G279900 Sobic010G269300--Sobic009G032200 Sobic007G125700--Sobic002G430900 Sobic004G207000 Sobic004G207000 Sobic007G125700--Sobic004G207000 Sobic007G125700--Sobic010G149600 Sobic007G125700--Sobic010G269300 Sobic007G125700--Sobic002G219900 Sobic003G077500 Sobic003G077500 Sobic007G125700--Sobic003G077500 Sobic007G125700--Sobic001G395200 Sobic007G125700--Sobic004G043750 Sobic007G125700--Sobic006G280100 Sobic010G233000--Sobic009G032200 Sobic004G006600 Sobic004G006600 Sobic010G233000--Sobic004G006600 Sobic010G233000--Sobic004G043750 Sobic001G484200 Sobic001G484200 Sobic010G233000--Sobic001G484200 Sobic004G177600 Sobic004G177600 Sobic010G233000--Sobic004G177600 Sobic010G233000--Sobic010G236200 Sobic008G057000 Sobic008G057000 Sobic010G233000--Sobic008G057000 Sobic010G233000--Sobic010G215900 Sobic010G233000--Sobic003G221500
Octagon: transcription factors


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