Gene annotation
Transcriptome id Sobic.009G190200.1
Synonym Sb09g024890, KTF1, SPT5L
Functional annotation transcription elongation factor SPT5 homolog 1, putative, expressed
UniProt A0A1Z5R3E8
Pfam PF11942 PF03439
Panther DB PTHR11125 PTHR11125:SF8
NCBI CDD KOG1999; RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G04290 : kow domain-containing transcription factor 1
RAP-DB (Rice) LOC_Os05g43060.1 : retrotransposon, putative, centromere-specific, expressed
MaizeGDB (Corn) Zm00025a044161 , Zm00025a004874 , Zm00025a004875 , Zm00025a035213 , Zm00025a037912 , Zm00025a030745 , Zm00025a035291
Brachypodium KQK05519 , PNT70959
Barley HORVU1Hr1G075270.1 , HORVU1Hr1G075270.16 , HORVU1Hr1G075270.17 , HORVU1Hr1G075270.14 , HORVU1Hr1G075270.15 , HORVU1Hr1G075270.12 , HORVU1Hr1G075270.13 , HORVU1Hr1G075270.10 , HORVU1Hr1G075270.11 , HORVU1Hr1G075270.19 , HORVU1Hr1G075270.4 , HORVU1Hr1G075270.5 , HORVU1Hr1G075270.6 , HORVU1Hr1G075270.7 , HORVU1Hr1G075270.18 , HORVU1Hr1G075270.2 , HORVU1Hr1G075270.3 , HORVU1Hr1G075270.8 , HORVU1Hr1G075270.9
Wheat TraesCS1D02G325500 , TraesCS1B02G337800 , TraesCS1B02G337800 , TraesCS1A02G324800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G043750 - K16251: DNA-directed RNA polymerase V subunit 1
2 Sobic.006G280100 SET domain containing protein, expressed -
3 Sobic.002G263700 bromodomain protein 103, putative, expressed -
4 Sobic.007G034200 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
5 Sobic.008G017900 expressed protein -
6 Sobic.007G125700 NHL repeat-containing protein, putative, expressed -
7 Sobic.009G031500 agenet domain containing protein, putative, expressed -
8 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
9 Sobic.003G298900 1,3-beta-glucan synthase component, putative, expressed K11000: callose synthase
10 Sobic.010G269300 hydrolase, acting on carbon-nitrogen, putative, expressed -
11 Sobic.004G129600 expressed protein -
12 Sobic.009G101000 - -
13 Sobic.002G079100 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
14 Sobic.004G020900 ulp1 protease family protein, putative, expressed K16287: ubiquitin-like-specific protease 1C/D
15 Sobic.003G231100 dnaJ domain containing protein, expressed -
16 Sobic.004G111000 bromodomain containing protein, expressed -
17 Sobic.003G124600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
18 Sobic.010G097500 DNA polymerase lambda, putative, expressed K03512: DNA polymerase lambda
19 Sobic.001G522400 FHA domain containing protein, putative, expressed -
20 Sobic.009G032200 DNA methyltransferase protein, putative, expressed -


Gene co-expression network
sample Sobic009G190200 Sobic009G190200 Sobic004G043750 Sobic004G043750 Sobic009G190200--Sobic004G043750 Sobic006G280100 Sobic006G280100 Sobic009G190200--Sobic006G280100 Sobic002G263700 Sobic002G263700 Sobic009G190200--Sobic002G263700 Sobic007G034200 Sobic007G034200 Sobic009G190200--Sobic007G034200 Sobic008G017900 Sobic008G017900 Sobic009G190200--Sobic008G017900 Sobic007G125700 Sobic007G125700 Sobic009G190200--Sobic007G125700 Sobic009G031500 Sobic009G031500 Sobic009G190200--Sobic009G031500 Sobic004G038100 Sobic004G038100 Sobic009G190200--Sobic004G038100 Sobic003G298900 Sobic003G298900 Sobic009G190200--Sobic003G298900 Sobic004G043750--Sobic009G190200 Sobic004G043750--Sobic006G280100 Sobic009G259900 Sobic009G259900 Sobic004G043750--Sobic009G259900 Sobic010G236200 Sobic010G236200 Sobic004G043750--Sobic010G236200 Sobic001G395200 Sobic001G395200 Sobic004G043750--Sobic001G395200 Sobic004G111000 Sobic004G111000 Sobic004G043750--Sobic004G111000 Sobic010G269300 Sobic010G269300 Sobic004G043750--Sobic010G269300 Sobic004G043750--Sobic007G125700 Sobic010G233000 Sobic010G233000 Sobic004G043750--Sobic010G233000 Sobic006G280100--Sobic009G190200 Sobic002G219900 Sobic002G219900 Sobic006G280100--Sobic002G219900 Sobic006G280100--Sobic004G043750 Sobic006G280100--Sobic004G038100 Sobic007G159200 Sobic007G159200 Sobic006G280100--Sobic007G159200 Sobic003G135500 Sobic003G135500 Sobic006G280100--Sobic003G135500 Sobic006G280100--Sobic007G125700 Sobic002G079100 Sobic002G079100 Sobic006G280100--Sobic002G079100 Sobic008G080500 Sobic008G080500 Sobic006G280100--Sobic008G080500 Sobic002G263700--Sobic010G269300 Sobic004G141800 Sobic004G141800 Sobic002G263700--Sobic004G141800 Sobic004G285000 Sobic004G285000 Sobic002G263700--Sobic004G285000 Sobic002G263700--Sobic004G111000 Sobic002G063900 Sobic002G063900 Sobic002G263700--Sobic002G063900 Sobic002G263700--Sobic006G280100 Sobic006G245900 Sobic006G245900 Sobic002G263700--Sobic006G245900 Sobic003G016500 Sobic003G016500 Sobic002G263700--Sobic003G016500 Sobic004G309900 Sobic004G309900 Sobic002G263700--Sobic004G309900 Sobic003G299500 Sobic003G299500 Sobic007G034200--Sobic003G299500 Sobic009G120400 Sobic009G120400 Sobic007G034200--Sobic009G120400 Sobic001G051400 Sobic001G051400 Sobic007G034200--Sobic001G051400 Sobic001G123600 Sobic001G123600 Sobic007G034200--Sobic001G123600 Sobic003G194800 Sobic003G194800 Sobic007G034200--Sobic003G194800 Sobic002G386900 Sobic002G386900 Sobic007G034200--Sobic002G386900 Sobic006G191200 Sobic006G191200 Sobic007G034200--Sobic006G191200 Sobic003G113300 Sobic003G113300 Sobic007G034200--Sobic003G113300 Sobic006G170900 Sobic006G170900 Sobic007G034200--Sobic006G170900 Sobic004G020900 Sobic004G020900 Sobic008G017900--Sobic004G020900 Sobic002G180900 Sobic002G180900 Sobic008G017900--Sobic002G180900 Sobic007G039300 Sobic007G039300 Sobic008G017900--Sobic007G039300 Sobic008G017900--Sobic009G190200 Sobic008G017900--Sobic002G263700 Sobic009G069200 Sobic009G069200 Sobic008G017900--Sobic009G069200 Sobic002G154400 Sobic002G154400 Sobic008G017900--Sobic002G154400 Sobic008G017900--Sobic006G191200 Sobic003G124600 Sobic003G124600 Sobic008G017900--Sobic003G124600 Sobic002G430900 Sobic002G430900 Sobic007G125700--Sobic002G430900 Sobic004G207000 Sobic004G207000 Sobic007G125700--Sobic004G207000 Sobic010G149600 Sobic010G149600 Sobic007G125700--Sobic010G149600 Sobic007G125700--Sobic010G269300 Sobic007G125700--Sobic002G219900 Sobic003G077500 Sobic003G077500 Sobic007G125700--Sobic003G077500 Sobic007G125700--Sobic001G395200 Sobic007G125700--Sobic004G043750 Sobic007G125700--Sobic006G280100 Sobic009G031500--Sobic004G207000 Sobic001G540700 Sobic001G540700 Sobic009G031500--Sobic001G540700 Sobic006G126600 Sobic006G126600 Sobic009G031500--Sobic006G126600 Sobic009G031500--Sobic007G125700 Sobic001G487200 Sobic001G487200 Sobic009G031500--Sobic001G487200 Sobic003G274400 Sobic003G274400 Sobic009G031500--Sobic003G274400 Sobic009G031500--Sobic003G077500 Sobic004G206300 Sobic004G206300 Sobic009G031500--Sobic004G206300 Sobic003G027800 Sobic003G027800 Sobic009G031500--Sobic003G027800 Sobic006G033101 Sobic006G033101 Sobic004G038100--Sobic006G033101 Sobic006G181800 Sobic006G181800 Sobic004G038100--Sobic006G181800 Sobic001G373000 Sobic001G373000 Sobic004G038100--Sobic001G373000 Sobic004G215900 Sobic004G215900 Sobic004G038100--Sobic004G215900 Sobic010G188000 Sobic010G188000 Sobic004G038100--Sobic010G188000 Sobic003G259600 Sobic003G259600 Sobic004G038100--Sobic003G259600 Sobic001G373800 Sobic001G373800 Sobic004G038100--Sobic001G373800 Sobic004G038100--Sobic006G280100 Sobic009G104900 Sobic009G104900 Sobic004G038100--Sobic009G104900 Sobic002G006100 Sobic002G006100 Sobic003G298900--Sobic002G006100 Sobic003G298900--Sobic001G540700 Sobic001G123100 Sobic001G123100 Sobic003G298900--Sobic001G123100 Sobic009G254000 Sobic009G254000 Sobic003G298900--Sobic009G254000 Sobic009G005700 Sobic009G005700 Sobic003G298900--Sobic009G005700 Sobic005G064100 Sobic005G064100 Sobic003G298900--Sobic005G064100 Sobic002G253900 Sobic002G253900 Sobic003G298900--Sobic002G253900 Sobic003G411700 Sobic003G411700 Sobic003G298900--Sobic003G411700 Sobic007G197100 Sobic007G197100 Sobic003G298900--Sobic007G197100
Octagon: transcription factors


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